Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008832

Physical Location & Seq

Genomic Coordinates Forward (+)

29207841 .. 29209622

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAAATGATGAAGCGAGCACGGGAGATGTTTCTAGATGCTGCTGCTGGAGCAGTATTTGGATGGACCTGTGACTCCTTCCTGGAATGGATAGAGAAGTGCACCACGTTGGATATTCCGGTCCTGGACAGAGTCAAATCCACGGTGGAGAGTTTAGAGCTATGCATTCCAAAGATGGAAGAAGAGATGAAGCGGGCAAGAAAGTTTCTTGACAAGTTGGAGGAGGATAATGACTTGAGCTGGTCCAAGACAAGTGACAACGACCAACTTGTTGAATTGGATGCGTCTCTTAAGAGTCTGGTGGGGAAACTGCGCCTGCAGTTAGCAACGGAGGTCCTGGGTTTGGGAAGGGGGACCAAGAGAAAACTTGATGAAGTGGATCAGACTGTTATAGCAGGATTCTTAGATATACAGAAGAGGCAGGATGATATGCTCCAGAAAATGATGAAGAAGCTAGAACGGAAGGATTTGGCAAACCAAGTGGATCCGCTAAATGAAGGGGCGGCTCTAGTAGATGGACTAGAAGAACTTGATGATGTGGCTCAAGCGCACTATCTCAAAATAAGACAGAGAATCGAACTGACACTTGGATTGGTAAAAGAAAAGACGGCAGAAAATAAAGCGATGGTTCATATACCGGTTGGCGAAGTAAGGGATTTCAGAATGTCGATAAAGGACGGGGTGAATCTCCTCCGCGACTGCCCCGAGGTCGATGATTGGACCAAGGAGCTGGAGTTAGAATACACCAACAAATTTATTGCTTTGGAGGAAACACTCGAGGCACTTTACAATCGTCTAGCTGGAATACGACCACTTCAATGGAATTGTGGAACAACGTCGATTCAGGATTCTGCCATCAAGACTACCAAGGATTTTATCATCCACGGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

298

Amino Acids

33.89

Weight (kDa)

4.94

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23270
rosa_chinensis	RchiOBHm_Chr2g0104661
rosa_laevigata	RLG00000017339 RLG00000018393
rosa_multiflora	Rmu_sc0001618.1_g000010 Rmu_sc0002316.1_g000024 Rmu_sc0009463.1_g000009
rosa_roxburghii	Rroxscaffold_2G00125910 Rroxscaffold_2G00138860
rosa_rugosa	Rorug02G0121700 Rorug02G0216500
rosa_samantha	Rh2AG171900 Rh2BG179400 Rh2BG285200 Rh2BG285300 Rh2BG285400 Rh2CG177000 Rh2DG178200 Rh2DG281000 Rh2DG281300 Rh4CG069800
rosa_wichuraiana	Rw2G013450 Rw2G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	696
AciI	CCGC	4 cut(s)	193, 488, 503, 694
AclWI	GGATC	3 cut(s)	387, 479, 492
AcsI	RAATTY	1 cut(s)	752
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflII	CTTAAG	1 cut(s)	290
AgeI	ACCGGT	1 cut(s)	637
AgsI	TTSAA	2 cut(s)	275, 818
AjnI	CCWGG	3 cut(s)	81, 123, 336
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	5 cut(s)	160, 240, 454, 730, 800
AluI	AGCT	5 cut(s)	160, 240, 454, 730, 800
Alw21I	GWGCWC	2 cut(s)	22, 104
Alw26I	GTCTC	1 cut(s)	291
Alw44I	GTGCAC	1 cut(s)	100
AlwI	GGATC	3 cut(s)	387, 479, 492
Ama87I	CYCGRG	2 cut(s)	704, 776
ApaLI	GTGCAC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	41, 44
ApoI	RAATTY	1 cut(s)	752
AsiGI	ACCGGT	1 cut(s)	637
AspLEI	GCGC	2 cut(s)	315, 550
AspS9I	GGNCC	6 cut(s)	66, 121, 243, 334, 354, 720
AsuHPI	GGTGA	1 cut(s)	694
AvaI	CYCGRG	2 cut(s)	704, 776
AvaII	GGWCC	6 cut(s)	66, 121, 243, 334, 354, 720
BaeGI	GKGCMC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	484
Bbv12I	GWGCWC	2 cut(s)	22, 104
BbvI	GCAGC	2 cut(s)	28, 31
BccI	CCATC	5 cut(s)	57, 169, 509, 619, 863
BceAI	ACGGC	1 cut(s)	624
BciT130I	CCWGG	3 cut(s)	83, 125, 338
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	5 cut(s)	35, 455, 509, 521, 797
BfmI	CTRYAG	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	3 cut(s)	42, 45, 504
BlsI	GCNGC	3 cut(s)	43, 46, 505
Bme1390I	CCNGG	3 cut(s)	83, 125, 338
Bme18I	GGWCC	6 cut(s)	66, 121, 243, 334, 354, 720
BmeT110I	CYCGRG	2 cut(s)	704, 776
BmgT120I	GGNCC	6 cut(s)	66, 121, 243, 334, 354, 720
BmiI	GGNNCC	2 cut(s)	355, 486
BmrFI	CCNGG	3 cut(s)	83, 125, 338
BmsI	GCATC	2 cut(s)	28, 271
BpmI	CTGGAG	3 cut(s)	69, 419, 752
BpuEI	CTTGAG	2 cut(s)	256, 528
BsaJI	CCNNGG	6 cut(s)	141, 337, 705, 723, 867, 883
BsaWI	WCCGGW	2 cut(s)	118, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	719, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	637
BseBI	CCWGG	3 cut(s)	83, 125, 338
BseDI	CCNNGG	6 cut(s)	141, 337, 705, 723, 867, 883
BseGI	GGATG	4 cut(s)	68, 286, 430, 879
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseRI	GAGGAG	2 cut(s)	236, 680
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	28, 31
Bsh1236I	CGCG	1 cut(s)	696
BshTI	ACCGGT	1 cut(s)	637
BsiHKAI	GWGCWC	2 cut(s)	22, 104
BsiHKCI	CYCGRG	2 cut(s)	704, 776
BsiSI	CCGG	2 cut(s)	119, 638
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	291
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	165
BsoBI	CYCGRG	2 cut(s)	704, 776
Bsp1286I	GDGCHC	2 cut(s)	22, 104
Bsp143I	GATC	2 cut(s)	379, 484
BspACI	CCGC	4 cut(s)	193, 488, 503, 694
BspFNI	CGCG	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	355, 486
BspMAI	CTGCAG	1 cut(s)	321
BspPI	GGATC	3 cut(s)	387, 479, 492
BspTI	CTTAAG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	637
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	6 cut(s)	141, 337, 705, 723, 867, 883
BssMI	GATC	2 cut(s)	379, 484
BssT1I	CCWWGG	2 cut(s)	723, 867
Bst2UI	CCWGG	3 cut(s)	83, 125, 338
Bst4CI	ACNGT	3 cut(s)	145, 388, 887
Bst6I	CTCTTC	2 cut(s)	177, 410
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	3 cut(s)	18, 195, 317
BstDEI	CTNAG	1 cut(s)	403
BstDSI	CCRYGG	2 cut(s)	141, 883
BstF5I	GGATG	4 cut(s)	68, 286, 430, 879
BstFNI	CGCG	1 cut(s)	696
BstHHI	GCGC	2 cut(s)	315, 550
BstKTI	GATC	2 cut(s)	382, 487
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	379, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	3 cut(s)	83, 125, 338
BstSCI	CCNGG	3 cut(s)	81, 123, 336
BstSFI	CTRYAG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	28, 31
BstX2I	RGATCY	1 cut(s)	484
BstXI	CCANNNNNNTGG	2 cut(s)	730, 819
BstYI	RGATCY	1 cut(s)	484
BtgI	CCRYGG	2 cut(s)	141, 883
BtgZI	GCGATG	1 cut(s)	638
BtsCI	GGATG	4 cut(s)	68, 286, 430, 879
Cac8I	GCNNGC	3 cut(s)	18, 195, 317
CfoI	GCGC	2 cut(s)	315, 550
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	6 cut(s)	66, 121, 243, 334, 354, 720
CseI	GACGC	1 cut(s)	273
CspAI	ACCGGT	1 cut(s)	637
CspCI	CAANNNNNGTGG	3 cut(s)	462, 497, 872
CviJI	RGCY	7 cut(s)	160, 240, 454, 506, 542, 730, 800
CviKI_1	RGCY	7 cut(s)	160, 240, 454, 506, 542, 730, 800
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	2 cut(s)	381, 486
DpnII	GATC	2 cut(s)	379, 484
Eam1104I	CTCTTC	2 cut(s)	177, 410
EarI	CTCTTC	2 cut(s)	177, 410
Eco130I	CCWWGG	2 cut(s)	723, 867
Eco47I	GGWCC	6 cut(s)	66, 121, 243, 334, 354, 720
Eco88I	CYCGRG	2 cut(s)	704, 776
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	3 cut(s)	81, 123, 336
EcoT14I	CCWWGG	2 cut(s)	723, 867
EcoT22I	ATGCAT	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	723, 867
Esp3I	CGTCTC	1 cut(s)	291
FaiI	YATR	6 cut(s)	163, 392, 410, 431, 633, 635
FaqI	GGGAC	1 cut(s)	367
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	42, 45, 504
FokI	GGATG	4 cut(s)	75, 293, 437, 866
Fsp4HI	GCNGC	3 cut(s)	42, 45, 504
FspBI	CTAG	5 cut(s)	35, 455, 509, 521, 797
GlaI	GCGC	2 cut(s)	314, 549
GluI	GCNGC	3 cut(s)	42, 45, 504
GsuI	CTGGAG	3 cut(s)	69, 419, 752
HapII	CCGG	2 cut(s)	119, 638
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	2 cut(s)	315, 550
Hin6I	GCGC	2 cut(s)	313, 548
HinP1I	GCGC	2 cut(s)	313, 548
HinfI	GANTC	8 cut(s)	74, 132, 295, 399, 573, 685, 841, 848
HpaII	CCGG	2 cut(s)	119, 638
HphI	GGTGA	1 cut(s)	694
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	384, 662
Hpy188III	TCNNGA	5 cut(s)	35, 209, 436, 845, 859
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	4 cut(s)	88, 342, 457, 491
HpyCH4III	ACNGT	3 cut(s)	145, 388, 887
HpyCH4IV	ACGT	2 cut(s)	107, 836
HpyCH4V	TGCA	3 cut(s)	102, 165, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	403
HpySE526I	ACGT	2 cut(s)	107, 836
HspAI	GCGC	2 cut(s)	313, 548
Kzo9I	GATC	2 cut(s)	379, 484
LmnI	GCTCC	3 cut(s)	50, 438, 727
Lsp1109I	GCAGC	2 cut(s)	28, 31
LweI	GCATC	2 cut(s)	28, 271
MaeI	CTAG	5 cut(s)	35, 455, 509, 521, 797
MaeII	ACGT	2 cut(s)	107, 836
MaeIII	GTNAC	2 cut(s)	71, 254
MalI	GATC	2 cut(s)	381, 486
MboI	GATC	2 cut(s)	379, 484
MboII	GAAGA	5 cut(s)	191, 194, 427, 460, 536
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	2 cut(s)	22, 104
MluCI	AATT	3 cut(s)	275, 752, 823
MlyI	GAGTC	3 cut(s)	68, 141, 304
MmeI	TCCRAC	2 cut(s)	90, 198
MnlI	CCTC	8 cut(s)	214, 217, 325, 411, 700, 701, 760, 772
Mph1103I	ATGCAT	1 cut(s)	167
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	817
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	2 cut(s)	119, 638
MspR9I	CCNGG	3 cut(s)	83, 125, 338
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	3 cut(s)	83, 125, 338
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	2 cut(s)	379, 484
NlaIV	GGNNCC	2 cut(s)	355, 486
NmuCI	GTSAC	2 cut(s)	71, 254
NsiI	ATGCAT	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	776
PctI	GAATGC	1 cut(s)	165
PfeI	GAWTC	5 cut(s)	399, 573, 685, 841, 848
PflFI	GACNNNGTC	1 cut(s)	131
PfoI	TCCNGGA	2 cut(s)	81, 123
PinAI	ACCGGT	1 cut(s)	637
PkrI	GCNGC	3 cut(s)	43, 46, 505
PleI	GAGTC	3 cut(s)	68, 140, 303
PpsI	GAGTC	3 cut(s)	68, 140, 303
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	3 cut(s)	81, 123, 336
PspGI	CCWGG	3 cut(s)	81, 123, 336
PspN4I	GGNNCC	2 cut(s)	355, 486
PspPI	GGNCC	6 cut(s)	66, 121, 243, 334, 354, 720
PspPPI	RGGWCCY	1 cut(s)	334
PspXI	VCTCGAGB	1 cut(s)	776
PstI	CTGCAG	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	484
PsyI	GACNNNGTC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	817
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	42, 45, 504
Sau3AI	GATC	2 cut(s)	379, 484
Sau96I	GGNCC	6 cut(s)	66, 121, 243, 334, 354, 720
SchI	GAGTC	3 cut(s)	68, 141, 304
ScrFI	CCNGG	3 cut(s)	83, 125, 338
SduI	GDGCHC	2 cut(s)	22, 104
SfaNI	GCATC	2 cut(s)	28, 271
SfcI	CTRYAG	1 cut(s)	317
Sfr274I	CTCGAG	1 cut(s)	776
SinI	GGWCC	6 cut(s)	66, 121, 243, 334, 354, 720
SlaI	CTCGAG	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	817
SmlI	CTYRAG	4 cut(s)	235, 290, 543, 776
SmoI	CTYRAG	4 cut(s)	235, 290, 543, 776
Sse9I	AATT	3 cut(s)	275, 752, 823
SsiI	CCGC	4 cut(s)	193, 488, 503, 694
SspMI	CTAG	5 cut(s)	35, 455, 509, 521, 797
StyD4I	CCNGG	3 cut(s)	81, 123, 336
StyI	CCWWGG	2 cut(s)	723, 867
TaaI	ACNGT	3 cut(s)	145, 388, 887
TaiI	ACGT	2 cut(s)	110, 839
TaqI	TCGA	5 cut(s)	576, 668, 711, 777, 839
TasI	AATT	3 cut(s)	275, 752, 823
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	5 cut(s)	399, 573, 685, 841, 848
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	71, 254
TseI	GCWGC	2 cut(s)	41, 44
Tsp45I	GTSAC	2 cut(s)	71, 254
TspDTI	ATGAA	6 cut(s)	26, 203, 387, 461, 510, 620
TspGWI	ACGGA	2 cut(s)	344, 475
Tth111I	GACNNNGTC	1 cut(s)	131
Vha464I	CTTAAG	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	100
VpaK11BI	GGWCC	6 cut(s)	66, 121, 243, 334, 354, 720
XapI	RAATTY	1 cut(s)	752
XbaI	TCTAGA	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	776
XspI	CTAG	5 cut(s)	35, 455, 509, 521, 797
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.