Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001618.1

Orthogroup ID

OG0008832

Physical Location & Seq

Genomic Coordinates Reverse (-)

43726 .. 44959

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001618.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgattacggaagcaggggtgatgtttggagaggctactgcagcagcagtacttggaccggcctgtgaaggcttcctgaaatcgataaagaagtgctggatgtttgatgatcccgtcctggatagcgtcaaatccacggtggagaatttagagccatggattccaaagatggaagatcataacatgaagttgggtggccgtcaagatgaagtaaaagaactcaaagaagagatggagcggggcagaaggcttcttgacaagttgtcggaggttaatgacttgagctggttcaagacaagtagttacaacgaccaacttgttgcatcggatgcgtctcttaagagtctggtgaggaaactgcgcctgcagttagcgacggatgtgaaggaggtcttggttttggaaaaggagactgctaaggttgtgaaggggaccaagagaaaacttttcgaagtggatgagattgttaaagcaggattcctagggtctcagacgagggatgaagtgctcctgaacaagatggagaaactagaacggaaatttttgggaaaccaagtggatccgctaaatgaaggggcggctctagtagatgcactaggagaacttgatgatgcggctcaagagggaattgcgagtcgtatagggtctgtttggtatttgcagcactatctcagtgcaagacggtatgtcgacgagatatttggattggtagaaaaaaagacggcagaaaataaagcgatggtttatataccggttggcgaagtaagggatttcagaatgaagataatggacggggtgaatctcctccgcaactgccccgaggtcgctgtgtggaccgatgagctaaagttagaatacaccaacaaatttactgccttggaggaaacactggaggcacttcacaatcgtctagctgcaatacgaccacttcaatggaattgtggaacaacgtcgattcaggattctgccatcaagactaccaacgattttatcatccacggtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

335

Amino Acids

37.8

Weight (kDa)

5.26

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23270
rosa_chinensis	RchiOBHm_Chr2g0104661
rosa_laevigata	RLG00000017339 RLG00000018393
rosa_multiflora	Rmu_sc0001618.1_g000010 Rmu_sc0002316.1_g000024 Rmu_sc0009463.1_g000009
rosa_roxburghii	Rroxscaffold_2G00125910 Rroxscaffold_2G00138860
rosa_rugosa	Rorug02G0121700 Rorug02G0216500
rosa_samantha	Rh2AG171900 Rh2BG179400 Rh2BG285200 Rh2BG285300 Rh2BG285400 Rh2CG177000 Rh2DG178200 Rh2DG281000 Rh2DG281300 Rh4CG069800
rosa_wichuraiana	Rw2G013450 Rw2G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	5 cut(s)	238, 563, 578, 614, 808
AclWI	GGATC	3 cut(s)	104, 554, 567
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	3 cut(s)	145, 539, 866
AfaI	GTAC	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	338
AgeI	ACCGGT	1 cut(s)	751
AgsI	TTSAA	2 cut(s)	292, 932
AhdI	GACNNNNNGTC	2 cut(s)	262, 686
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	3 cut(s)	285, 844, 914
AluI	AGCT	3 cut(s)	285, 844, 914
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	3 cut(s)	339, 404, 492
AlwI	GGATC	3 cut(s)	104, 554, 567
Ama87I	CYCGRG	1 cut(s)	818
AoxI	GGCC	2 cut(s)	60, 196
ApeKI	GCWGC	4 cut(s)	41, 44, 661, 914
ApoI	RAATTY	3 cut(s)	145, 539, 866
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AsiGI	ACCGGT	1 cut(s)	751
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	3 cut(s)	56, 432, 834
AsuHPI	GGTGA	3 cut(s)	31, 361, 808
AsuII	TTCGAA	1 cut(s)	450
AvaI	CYCGRG	1 cut(s)	818
AvaII	GGWCC	3 cut(s)	56, 432, 834
AvrII	CCTAGG	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	4 cut(s)	53, 56, 673, 901
BccI	CCATC	5 cut(s)	163, 226, 514, 733, 977
BceAI	ACGGC	2 cut(s)	183, 738
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	339, 404, 492
BfaI	CTAG	5 cut(s)	482, 530, 584, 596, 911
BfmI	CTRYAG	2 cut(s)	39, 365
BfrI	CTTAAG	1 cut(s)	338
BisI	GCNGC	6 cut(s)	42, 45, 579, 615, 662, 915
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	6 cut(s)	43, 46, 580, 616, 663, 916
BmcAI	AGTACT	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	3 cut(s)	56, 432, 834
BmeRI	GACNNNNNGTC	2 cut(s)	262, 686
BmeT110I	CYCGRG	1 cut(s)	818
BmgT120I	GGNCC	3 cut(s)	56, 432, 834
BmiI	GGNNCC	2 cut(s)	433, 561
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	4 cut(s)	319, 332, 580, 601
BpmI	CTGGAG	1 cut(s)	911
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	301, 603
Bsa29I	ATCGAT	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	6 cut(s)	135, 155, 481, 819, 876, 997
BsaWI	WCCGGW	1 cut(s)	751
Bse118I	RCCGGY	2 cut(s)	58, 751
Bse1I	ACTGG	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	83
BseDI	CCNNGG	6 cut(s)	135, 155, 481, 819, 876, 997
BseGI	GGATG	6 cut(s)	105, 334, 385, 463, 505, 993
BseMII	CTCAG	2 cut(s)	503, 685
BseNI	ACTGG	1 cut(s)	894
BseRI	GAGGAG	1 cut(s)	794
BseXI	GCAGC	4 cut(s)	53, 56, 673, 901
BshFI	GGCC	2 cut(s)	62, 198
BshTI	ACCGGT	1 cut(s)	751
BshVI	ATCGAT	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	510
BsiHKCI	CYCGRG	1 cut(s)	818
BsiSI	CCGG	2 cut(s)	59, 752
BslFI	GGGAC	1 cut(s)	445
BsmAI	GTCTC	3 cut(s)	339, 404, 492
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	62, 198
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	1 cut(s)	818
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	3 cut(s)	109, 175, 559
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	5 cut(s)	238, 563, 578, 614, 808
BspANI	GGCC	2 cut(s)	62, 198
BspCNI	CTCAG	2 cut(s)	502, 684
BspDI	ATCGAT	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	433, 561
BspMAI	CTGCAG	2 cut(s)	43, 369
BspPI	GGATC	3 cut(s)	104, 554, 567
BspT104I	TTCGAA	1 cut(s)	450
BspTI	CTTAAG	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	238
BsrFI	RCCGGY	2 cut(s)	58, 751
BsrI	ACTGG	1 cut(s)	894
BssAI	RCCGGY	2 cut(s)	58, 751
BssECI	CCNNGG	6 cut(s)	135, 155, 481, 819, 876, 997
BssMI	GATC	3 cut(s)	109, 175, 559
BssT1I	CCWWGG	3 cut(s)	155, 481, 876
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	139, 684, 1001
Bst6I	CTCTTC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	3 cut(s)	417, 489, 671
BstDSI	CCRYGG	3 cut(s)	135, 155, 997
BstF5I	GGATG	6 cut(s)	105, 334, 385, 463, 505, 993
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	3 cut(s)	112, 178, 562
BstMAI	GTCTC	3 cut(s)	339, 404, 492
BstMBI	GATC	3 cut(s)	109, 175, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 329
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	39, 365
BstV1I	GCAGC	4 cut(s)	53, 56, 673, 901
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	933
BstYI	RGATCY	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	62, 198
BsuTUI	ATCGAT	1 cut(s)	83
BtgI	CCRYGG	3 cut(s)	135, 155, 997
BtgZI	GCGATG	1 cut(s)	752
BtsCI	GGATG	6 cut(s)	105, 334, 385, 463, 505, 993
BtsIMutI	CAGTG	2 cut(s)	679, 887
Cac8I	GCNNGC	1 cut(s)	365
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	2 cut(s)	58, 751
Cfr13I	GGNCC	3 cut(s)	56, 432, 834
ClaI	ATCGAT	1 cut(s)	83
CseI	GACGC	2 cut(s)	115, 321
Csp6I	GTAC	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	751
CspCI	CAANNNNNGTGG	1 cut(s)	986
CviAII	CATG	2 cut(s)	156, 184
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	3 cut(s)	417, 489, 671
DpnI	GATC	3 cut(s)	111, 177, 561
DpnII	GATC	3 cut(s)	109, 175, 559
DriI	GACNNNNNGTC	2 cut(s)	262, 686
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	2 cut(s)	262, 686
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	3 cut(s)	155, 481, 876
Eco31I	GGTCTC	1 cut(s)	492
Eco47I	GGWCC	3 cut(s)	56, 432, 834
Eco88I	CYCGRG	1 cut(s)	818
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	3 cut(s)	155, 481, 876
ErhI	CCWWGG	3 cut(s)	155, 481, 876
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	2 cut(s)	159, 187
FaiI	YATR	7 cut(s)	157, 180, 185, 641, 687, 747, 749
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	155, 183
FauI	CCCGC	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	6 cut(s)	42, 45, 579, 615, 662, 915
FokI	GGATG	6 cut(s)	112, 341, 392, 470, 512, 980
Fsp4HI	GCNGC	6 cut(s)	42, 45, 579, 615, 662, 915
FspBI	CTAG	5 cut(s)	482, 530, 584, 596, 911
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	6 cut(s)	42, 45, 579, 615, 662, 915
GsuI	CTGGAG	1 cut(s)	911
HaeIII	GGCC	2 cut(s)	62, 198
HapII	CCGG	2 cut(s)	59, 752
HgaI	GACGC	2 cut(s)	115, 321
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	159, 187
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HinfI	GANTC	7 cut(s)	160, 343, 477, 634, 799, 955, 962
HpaII	CCGG	2 cut(s)	59, 752
HphI	GGTGA	3 cut(s)	31, 361, 808
Hpy166II	GTNNAC	2 cut(s)	691, 834
Hpy188I	TCNGA	4 cut(s)	268, 328, 492, 776
Hpy188III	TCNNGA	8 cut(s)	76, 203, 254, 292, 511, 620, 959, 973
Hpy8I	GTNNAC	2 cut(s)	691, 834
Hpy99I	CGWCG	3 cut(s)	379, 695, 955
HpyAV	CCTTC	5 cut(s)	62, 240, 379, 421, 566
HpyCH4III	ACNGT	3 cut(s)	139, 684, 1001
HpyCH4IV	ACGT	1 cut(s)	950
HpyCH4V	TGCA	7 cut(s)	41, 323, 367, 593, 661, 677, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 329
HpyF3I	CTNAG	3 cut(s)	417, 489, 671
HpySE526I	ACGT	1 cut(s)	950
Hsp92II	CATG	2 cut(s)	159, 187
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	109, 175, 559
LmnI	GCTCC	2 cut(s)	235, 513
Lsp1109I	GCAGC	4 cut(s)	53, 56, 673, 901
LweI	GCATC	4 cut(s)	319, 332, 580, 601
MaeI	CTAG	5 cut(s)	482, 530, 584, 596, 911
MaeII	ACGT	1 cut(s)	950
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	3 cut(s)	111, 177, 561
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	3 cut(s)	109, 175, 559
MboII	GAAGA	3 cut(s)	185, 239, 793
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	6 cut(s)	145, 539, 627, 866, 937, 1003
MlyI	GAGTC	2 cut(s)	352, 643
MmeI	TCCRAC	1 cut(s)	246
MseI	TTAA	3 cut(s)	273, 339, 468
MslI	CAYNNNNRTG	1 cut(s)	931
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	2 cut(s)	59, 752
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	41, 329
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	3 cut(s)	109, 175, 559
NlaIII	CATG	2 cut(s)	159, 187
NlaIV	GGNNCC	2 cut(s)	433, 561
NspV	TTCGAA	1 cut(s)	450
PfeI	GAWTC	5 cut(s)	160, 477, 799, 955, 962
PfoI	TCCNGGA	1 cut(s)	117
PinAI	ACCGGT	1 cut(s)	751
PkrI	GCNGC	6 cut(s)	43, 46, 580, 616, 663, 916
PleI	GAGTC	2 cut(s)	351, 642
PpsI	GAGTC	2 cut(s)	351, 642
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	433, 561
PspPI	GGNCC	3 cut(s)	56, 432, 834
PstI	CTGCAG	2 cut(s)	43, 369
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	931
SalI	GTCGAC	1 cut(s)	689
SaqAI	TTAA	3 cut(s)	273, 339, 468
SatI	GCNGC	6 cut(s)	42, 45, 579, 615, 662, 915
Sau3AI	GATC	3 cut(s)	109, 175, 559
Sau96I	GGNCC	3 cut(s)	56, 432, 834
ScaI	AGTACT	1 cut(s)	51
SchI	GAGTC	2 cut(s)	352, 643
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	510
SetI	ASST	8 cut(s)	273, 287, 393, 423, 825, 846, 916, 953
SfaNI	GCATC	4 cut(s)	319, 332, 580, 601
SfcI	CTRYAG	2 cut(s)	39, 365
SfuI	TTCGAA	1 cut(s)	450
SinI	GGWCC	3 cut(s)	56, 432, 834
SmiMI	CAYNNNNRTG	1 cut(s)	931
SmlI	CTYRAG	3 cut(s)	280, 338, 618
SmoI	CTYRAG	3 cut(s)	280, 338, 618
Sse9I	AATT	6 cut(s)	145, 539, 627, 866, 937, 1003
SsiI	CCGC	5 cut(s)	238, 563, 578, 614, 808
SspMI	CTAG	5 cut(s)	482, 530, 584, 596, 911
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	3 cut(s)	155, 481, 876
TaaI	ACNGT	3 cut(s)	139, 684, 1001
TaiI	ACGT	1 cut(s)	953
TaqI	TCGA	4 cut(s)	83, 450, 690, 953
TaqII	GACCGA	1 cut(s)	851
TasI	AATT	6 cut(s)	145, 539, 627, 866, 937, 1003
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	2 cut(s)	581, 617
TfiI	GAWTC	5 cut(s)	160, 477, 799, 955, 962
Tru1I	TTAA	3 cut(s)	273, 339, 468
Tru9I	TTAA	3 cut(s)	273, 339, 468
TscAI	CASTG	2 cut(s)	679, 894
TseI	GCWGC	4 cut(s)	41, 44, 661, 914
TspDTI	ATGAA	5 cut(s)	200, 222, 516, 585, 794
TspGWI	ACGGA	3 cut(s)	23, 392, 550
TspRI	CASTG	2 cut(s)	679, 894
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	3 cut(s)	56, 432, 834
XapI	RAATTY	3 cut(s)	145, 539, 866
XmaJI	CCTAGG	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	5 cut(s)	482, 530, 584, 596, 911
ZrmI	AGTACT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.