Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008832

Physical Location & Seq

Genomic Coordinates Forward (+)

31311484 .. 31336866

Gene Structure 25383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG285200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGGACCAAGAGAAAACTTTATGAAGTGGATGAGACTGTTAAAGCAGGATTCCTAGGGTCTCAGACGAGGGATGAAGTGCTCCTGAACAAGATGGACAAACTAGAACGGAAATTTTTGGGAAACCAAGTGGATCCGCTAAATGAAGGGGCGGCTCTAGTAGATGGACTAGGAGAGCTTGATGATGTGGCTGAAGTGGTAATTACACGATCATGGTCTGATGAGTGGTATGTGTCGTTCTGTCGCAAAGTAAGACGGAGAATCGAACTGACATTTGAATCGGTAGAAAAAAAGATGGCAGAAAATAAAGCGATGGTTTATATACCGGTTGGCGAAGTAAGGGATTTCAGAATGAAGATAAAGGACGGGGTGAATCTCCTCCGCGACTGCTCCGAGGTCGCTGTGTGGACTGATGAGCTGAAGTTAGAATACACCAACAAATATATTGCTTTGGAGGAAACACTCGAGGCACTTTACAATCGTCTAGCTGGAATACGACCACTTCAATGGAATTGTGGAACAACGTCGATTCAGGATTCTGCCATCAAGACTACCAAGGATTTTATCATCCACGTTTGTAAGTCGGTCACTGAGGTTAGTGAGGAGAAGCCCTCAGAAGCAGAGGCCACAATTTCATTGAGGAACGATGAAAATAAAATAAAGAAAATCAAAAGTGAATATGGAGACAGTCACTGCAAAAGGGCAAATGCCAGGAAAAGCAGGCTTGAATTTGATGATCATGATGTTATTATTATTGACTCTGACTCTGACTCTGAACCTCGAAACAATGAAATCAGCTTGGAGTCTGAAATTGAGTGTCCTTTTCAAGGTGCAATTAGCCAAATAAGCAACGCCATTAATTACATCTGCTCTGGTTGTTCCAAGAGCTTCCCAACCAGCTGCTCTCAGGCCTTAGTAGAGCATCAAATTGCTCACAAGCCTTACTATGCTCATTCGAGTCACATTGAAGAAGAGAATAACGCCATAGATTCAACTTTTGTTGAGCCTAACGACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

339

Amino Acids

38.51

Weight (kDa)

5.0

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23270
rosa_chinensis	RchiOBHm_Chr2g0104661
rosa_laevigata	RLG00000017339 RLG00000018393
rosa_multiflora	Rmu_sc0001618.1_g000010 Rmu_sc0002316.1_g000024 Rmu_sc0009463.1_g000009
rosa_roxburghii	Rroxscaffold_2G00125910 Rroxscaffold_2G00138860
rosa_rugosa	Rorug02G0121700 Rorug02G0216500
rosa_samantha	Rh2AG171900 Rh2BG179400 Rh2BG285200 Rh2BG285300 Rh2BG285400 Rh2CG177000 Rh2DG178200 Rh2DG281000 Rh2DG281300 Rh4CG069800
rosa_wichuraiana	Rw2G013450 Rw2G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	384
AciI	CCGC	3 cut(s)	137, 152, 382
AclWI	GGATC	2 cut(s)	128, 141
AcsI	RAATTY	2 cut(s)	113, 728
AcuI	CTGAAG	2 cut(s)	213, 440
AfiI	CCNNNNNNNGG	1 cut(s)	827
AgeI	ACCGGT	1 cut(s)	325
AgsI	TTSAA	6 cut(s)	278, 506, 728, 827, 968, 993
AjnI	CCWGG	1 cut(s)	710
AluBI	AGCT	6 cut(s)	178, 418, 488, 798, 888, 900
AluI	AGCT	6 cut(s)	178, 418, 488, 798, 888, 900
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	3 cut(s)	29, 66, 678
AlwI	GGATC	2 cut(s)	128, 141
AlwNI	CAGNNNCTG	1 cut(s)	693
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	624, 909
ApeKI	GCWGC	1 cut(s)	900
ApoI	RAATTY	2 cut(s)	113, 728
AseI	ATTAAT	1 cut(s)	858
AsiGI	ACCGGT	1 cut(s)	325
AspA2I	CCTAGG	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	6
AvrII	CCTAGG	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	133
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	887
BccI	CCATC	5 cut(s)	88, 158, 289, 307, 551
BciT130I	CCWGG	1 cut(s)	712
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	3 cut(s)	29, 66, 678
BfaI	CTAG	5 cut(s)	56, 104, 158, 170, 485
BisI	GCNGC	2 cut(s)	153, 901
BlnI	CCTAGG	1 cut(s)	55
BlsI	GCNGC	2 cut(s)	154, 902
Bme1390I	CCNGG	1 cut(s)	712
Bme18I	GGWCC	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	7, 135
BmrFI	CCNGG	1 cut(s)	712
BmsI	GCATC	1 cut(s)	931
BplI	GAGNNNNNCTC	2 cut(s)	596, 628
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	55, 393, 555
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse118I	RCCGGY	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	712
BseDI	CCNNGG	3 cut(s)	55, 393, 555
BseGI	GGATG	3 cut(s)	37, 79, 567
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMII	CTCAG	4 cut(s)	77, 582, 627, 920
BseRI	GAGGAG	2 cut(s)	368, 617
BseXI	GCAGC	1 cut(s)	887
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	626, 911
BshTI	ACCGGT	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmAI	GTCTC	3 cut(s)	29, 66, 678
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	626, 911
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	133, 209, 736
BspACI	CCGC	3 cut(s)	137, 152, 382
BspANI	GGCC	2 cut(s)	626, 911
BspCNI	CTCAG	4 cut(s)	76, 583, 626, 919
BspFNI	CGCG	1 cut(s)	384
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	7, 135
BspPI	GGATC	2 cut(s)	128, 141
BspTNI	GGTCTC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	55, 393, 555
BssMI	GATC	3 cut(s)	133, 209, 736
BssT1I	CCWWGG	2 cut(s)	55, 555
Bst2UI	CCWGG	1 cut(s)	712
Bst4CI	ACNGT	2 cut(s)	40, 689
Bst6I	CTCTTC	1 cut(s)	966
BstC8I	GCNNGC	1 cut(s)	722
BstDEI	CTNAG	5 cut(s)	63, 591, 613, 906, 913
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	3 cut(s)	37, 79, 567
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	3 cut(s)	136, 212, 739
BstMAI	GTCTC	3 cut(s)	29, 66, 678
BstMBI	GATC	3 cut(s)	133, 209, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	846
BstNI	CCWGG	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	710
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	887
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	626, 911
BtgZI	GCGATG	1 cut(s)	326
BtsCI	GGATG	3 cut(s)	37, 79, 567
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	2 cut(s)	588, 691
Cac8I	GCNNGC	1 cut(s)	722
CaiI	CAGNNNCTG	1 cut(s)	693
CciI	TCATGA	1 cut(s)	739
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	6
CspAI	ACCGGT	1 cut(s)	325
CviAII	CATG	2 cut(s)	213, 740
DdeI	CTNAG	5 cut(s)	63, 591, 613, 906, 913
DpnI	GATC	3 cut(s)	135, 211, 738
DpnII	GATC	3 cut(s)	133, 209, 736
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
Eco130I	CCWWGG	2 cut(s)	55, 555
Eco147I	AGGCCT	1 cut(s)	911
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	213, 440
Eco88I	CYCGRG	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoRII	CCWGG	1 cut(s)	710
EcoT14I	CCWWGG	2 cut(s)	55, 555
ErhI	CCWWGG	2 cut(s)	55, 555
FaeI	CATG	2 cut(s)	216, 743
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	212, 739
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	2 cut(s)	153, 901
FokI	GGATG	3 cut(s)	44, 86, 554
Fsp4HI	GCNGC	2 cut(s)	153, 901
FspBI	CTAG	5 cut(s)	56, 104, 158, 170, 485
GluI	GCNGC	2 cut(s)	153, 901
HaeIII	GGCC	2 cut(s)	626, 911
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	2 cut(s)	216, 743
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	9 cut(s)	66, 220, 350, 394, 616, 763, 769, 775, 808
Hpy188III	TCNNGA	4 cut(s)	85, 533, 547, 740
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	1 cut(s)	529
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	40, 689
HpyCH4IV	ACGT	2 cut(s)	524, 573
HpyCH4V	TGCA	2 cut(s)	696, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	846
HpyF3I	CTNAG	5 cut(s)	63, 591, 613, 906, 913
HpySE526I	ACGT	2 cut(s)	524, 573
Hsp92II	CATG	2 cut(s)	216, 743
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	3 cut(s)	133, 209, 736
LmnI	GCTCC	2 cut(s)	87, 395
Lsp1109I	GCAGC	1 cut(s)	887
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	5 cut(s)	56, 104, 158, 170, 485
MaeII	ACGT	2 cut(s)	524, 573
MaeIII	GTNAC	3 cut(s)	586, 689, 959
MalI	GATC	3 cut(s)	135, 211, 738
MboI	GATC	3 cut(s)	133, 209, 736
MboII	GAAGA	3 cut(s)	367, 980, 983
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	84
MlyI	GAGTC	5 cut(s)	752, 758, 764, 812, 967
MseI	TTAA	3 cut(s)	42, 858, 1018
MslI	CAYNNNNRTG	2 cut(s)	211, 505
MspA1I	CMGCKG	1 cut(s)	900
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	712
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	846
NdeII	GATC	3 cut(s)	133, 209, 736
NlaIII	CATG	2 cut(s)	216, 743
NlaIV	GGNNCC	2 cut(s)	7, 135
NmuCI	GTSAC	3 cut(s)	586, 689, 959
PaeR7I	CTCGAG	1 cut(s)	464
PagI	TCATGA	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	911
PfeI	GAWTC	7 cut(s)	51, 261, 278, 373, 529, 536, 989
PinAI	ACCGGT	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	154, 902
PleI	GAGTC	5 cut(s)	752, 758, 764, 811, 966
PpsI	GAGTC	5 cut(s)	752, 758, 764, 811, 966
PshBI	ATTAAT	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	710
PspN4I	GGNNCC	2 cut(s)	7, 135
PspPI	GGNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	464
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PstNI	CAGNNNCTG	1 cut(s)	693
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	900
RseI	CAYNNNNRTG	2 cut(s)	211, 505
SaqAI	TTAA	3 cut(s)	42, 858, 1018
SatI	GCNGC	2 cut(s)	153, 901
Sau3AI	GATC	3 cut(s)	133, 209, 736
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	5 cut(s)	752, 758, 764, 812, 967
ScrFI	CCNGG	1 cut(s)	712
SduI	GDGCHC	1 cut(s)	84
SfaNI	GCATC	1 cut(s)	931
Sfr274I	CTCGAG	1 cut(s)	464
SinI	GGWCC	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	464
SmiMI	CAYNNNNRTG	2 cut(s)	211, 505
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SseBI	AGGCCT	1 cut(s)	911
SsiI	CCGC	3 cut(s)	137, 152, 382
SspMI	CTAG	5 cut(s)	56, 104, 158, 170, 485
StuI	AGGCCT	1 cut(s)	911
StyD4I	CCNGG	1 cut(s)	710
StyI	CCWWGG	2 cut(s)	55, 555
TaaI	ACNGT	2 cut(s)	40, 689
TaiI	ACGT	2 cut(s)	527, 576
TaqI	TCGA	5 cut(s)	264, 465, 527, 781, 956
TaqII	GACCGA	1 cut(s)	574
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	7 cut(s)	51, 261, 278, 373, 529, 536, 989
Tru1I	TTAA	3 cut(s)	42, 858, 1018
Tru9I	TTAA	3 cut(s)	42, 858, 1018
TscAI	CASTG	2 cut(s)	595, 698
TseFI	GTSAC	3 cut(s)	586, 689, 959
TseI	GCWGC	1 cut(s)	900
Tsp45I	GTSAC	3 cut(s)	586, 689, 959
TspDTI	ATGAA	7 cut(s)	39, 90, 159, 368, 624, 663, 804
TspGWI	ACGGA	2 cut(s)	124, 271
TspRI	CASTG	2 cut(s)	595, 698
VpaK11BI	GGWCC	1 cut(s)	6
VspI	ATTAAT	1 cut(s)	858
XagI	CCTNNNNNAGG	1 cut(s)	825
XapI	RAATTY	2 cut(s)	113, 728
XhoI	CTCGAG	1 cut(s)	464
XmaJI	CCTAGG	1 cut(s)	55
XspI	CTAG	5 cut(s)	56, 104, 158, 170, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.