Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008832

Physical Location & Seq

Genomic Coordinates Forward (+)

29994250 .. 29995972

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAAATGATGAAGCGAGCAGGGGAGATGTTTCTAGATGCTGCTGCTGGAGCAGTATTTGGATCGACCTGTGACTCCTTCCTGGAATCGATAGAGAAGTGCGGCACGTTGGATATTCCGGTCCTGGACAGAGTCAAATCCACGGTGGAGAGTTTAGAGCTATGCATTCCAAAGATGGAAGATCATGACATGACCTTTGGAGATGAAGTAAAAGAAGAGATGAAGCGGGCAAGAAAGTTTCTTGACAAGTTGTCGGAGGATAATGACTTGAGCTGGTCCAAGACAAGTGACAACGACCAACTTGTTGAATTGGATGCGTCTCTTAAGAGTCTGGTGGGGAAACTGCGCCTGCAGTTAGCAACGGAGGTCTTGGCTTTGGGAAAGCAGAATGCTACGGTTGTGAAGGGGACCAAGAGAAAACTTGATGAAGTGGATGAGACTGTTAAAGTAGGATTCTTAGGGTCTCAGACGAGGGATGAAGTGCTCCTGAACAAGATGGAGAAACTAGAACGGAAATTTTTGGGAAACCAAGTGGATCTGCTAAATGAAGGGGCGGCTCTAGTAGATGCACTAGGAGAGCTTGATGATGTGGCTCAAGAGGGAATTGCACGATCAAGGCATGATACGTGGTACCGGCCGTTCAATTACGAATTCCTGCAGAGACTGGACCTGGTATATGGATTGCTAGAAAAAAAGACGGCAGAAAATAAAGCGATGGTTTATATACCGGTTGGCGAAGTAAGGGATTTCAGAACGAAGATAAAGGACGGGGTGAATCTCCTCCGCAACTGCCCCGAGGTCGCTGTGTGGACCGATGAGCTGAAGTTAGAATACACCAACAAATTTATTGCTTTGAACAAAACACTGGAGGCACTTTACAATCGTCTAGATGGAATACGACCACTTCAATGGAATTGTGGAACAACGTCGGCTCAGGATTCTGCCATCAAGACTACCAAGGATTTTATCATCCACGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

327

Amino Acids

36.92

Weight (kDa)

5.05

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23270
rosa_chinensis	RchiOBHm_Chr2g0104661
rosa_laevigata	RLG00000017339 RLG00000018393
rosa_multiflora	Rmu_sc0001618.1_g000010 Rmu_sc0002316.1_g000024 Rmu_sc0009463.1_g000009
rosa_roxburghii	Rroxscaffold_2G00125910 Rroxscaffold_2G00138860
rosa_rugosa	Rorug02G0121700 Rorug02G0216500
rosa_samantha	Rh2AG171900 Rh2BG179400 Rh2BG285200 Rh2BG285300 Rh2BG285400 Rh2CG177000 Rh2DG178200 Rh2DG281000 Rh2DG281300 Rh4CG069800
rosa_wichuraiana	Rw2G013450 Rw2G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	630
AciI	CCGC	4 cut(s)	102, 226, 554, 784
AclWI	GGATC	2 cut(s)	70, 543
AcoI	YGGCCR	1 cut(s)	635
AcsI	RAATTY	3 cut(s)	515, 650, 842
AcuI	CTGAAG	1 cut(s)	842
AfaI	GTAC	1 cut(s)	632
AflII	CTTAAG	1 cut(s)	323
AgeI	ACCGGT	1 cut(s)	727
AgsI	TTSAA	4 cut(s)	308, 643, 856, 908
AhdI	GACNNNNNGTC	1 cut(s)	250
AjnI	CCWGG	3 cut(s)	81, 123, 669
AluBI	AGCT	4 cut(s)	160, 273, 580, 820
AluI	AGCT	4 cut(s)	160, 273, 580, 820
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	4 cut(s)	324, 431, 468, 655
AlwI	GGATC	2 cut(s)	70, 543
AlwNI	CAGNNNCTG	1 cut(s)	664
Ama87I	CYCGRG	1 cut(s)	794
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	2 cut(s)	41, 44
ApoI	RAATTY	3 cut(s)	515, 650, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AsiGI	ACCGGT	1 cut(s)	727
Asp718I	GGTACC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	5 cut(s)	121, 276, 408, 667, 810
AsuHPI	GGTGA	1 cut(s)	784
AvaI	CYCGRG	1 cut(s)	794
AvaII	GGWCC	5 cut(s)	121, 276, 408, 667, 810
BanI	GGYRCC	1 cut(s)	630
BarI	GAAGNNNNNNTAC	2 cut(s)	815, 847
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	28, 31
BccI	CCATC	5 cut(s)	169, 490, 709, 884, 953
BceAI	ACGGC	2 cut(s)	622, 714
BciT130I	CCWGG	3 cut(s)	83, 125, 671
BcoDI	GTCTC	4 cut(s)	324, 431, 468, 655
BfaI	CTAG	6 cut(s)	35, 506, 560, 572, 686, 887
BfmI	CTRYAG	2 cut(s)	350, 656
BfrI	CTTAAG	1 cut(s)	323
BisI	GCNGC	4 cut(s)	42, 45, 103, 555
BlsI	GCNGC	4 cut(s)	43, 46, 104, 556
Bme1390I	CCNGG	3 cut(s)	83, 125, 671
Bme18I	GGWCC	5 cut(s)	121, 276, 408, 667, 810
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	794
BmgT120I	GGNCC	5 cut(s)	121, 276, 408, 667, 810
BmiI	GGNNCC	2 cut(s)	409, 632
BmrFI	CCNGG	3 cut(s)	83, 125, 671
BmsI	GCATC	3 cut(s)	28, 304, 556
BpmI	CTGGAG	2 cut(s)	69, 887
Bpu10I	CCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	2 cut(s)	289, 579
Bsa29I	ATCGAT	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	4 cut(s)	141, 795, 957, 973
BsaWI	WCCGGW	2 cut(s)	118, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bse118I	RCCGGY	2 cut(s)	633, 727
Bse1I	ACTGG	2 cut(s)	669, 870
BseBI	CCWGG	3 cut(s)	83, 125, 671
BseCI	ATCGAT	1 cut(s)	89
BseDI	CCNNGG	4 cut(s)	141, 795, 957, 973
BseGI	GGATG	4 cut(s)	319, 439, 481, 969
BseMII	CTCAG	2 cut(s)	479, 947
BseNI	ACTGG	2 cut(s)	669, 870
BseRI	GAGGAG	1 cut(s)	770
BseX3I	CGGCCG	1 cut(s)	635
BseXI	GCAGC	2 cut(s)	28, 31
Bsh1285I	CGRYCG	1 cut(s)	638
BshFI	GGCC	1 cut(s)	637
BshNI	GGYRCC	1 cut(s)	630
BshTI	ACCGGT	1 cut(s)	727
BshVI	ATCGAT	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	794
BsiSI	CCGG	3 cut(s)	119, 634, 728
BslFI	GGGAC	1 cut(s)	421
BsmAI	GTCTC	4 cut(s)	324, 431, 468, 655
BsmBI	CGTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	2 cut(s)	165, 394
BsnI	GGCC	1 cut(s)	637
Bso31I	GGTCTC	1 cut(s)	468
BsoBI	CYCGRG	1 cut(s)	794
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	62, 181, 535, 611
BspACI	CCGC	4 cut(s)	102, 226, 554, 784
BspANI	GGCC	1 cut(s)	637
BspCNI	CTCAG	2 cut(s)	478, 946
BspDI	ATCGAT	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	409, 632
BspMAI	CTGCAG	2 cut(s)	354, 660
BspPI	GGATC	2 cut(s)	70, 543
BspT107I	GGYRCC	1 cut(s)	630
BspTI	CTTAAG	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	468
BsrFI	RCCGGY	2 cut(s)	633, 727
BsrI	ACTGG	2 cut(s)	669, 870
BssAI	RCCGGY	2 cut(s)	633, 727
BssECI	CCNNGG	4 cut(s)	141, 795, 957, 973
BssMI	GATC	4 cut(s)	62, 181, 535, 611
BssT1I	CCWWGG	1 cut(s)	957
Bst2UI	CCWGG	3 cut(s)	83, 125, 671
Bst4CI	ACNGT	4 cut(s)	145, 397, 442, 977
Bst6I	CTCTTC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	627
BstC8I	GCNNGC	3 cut(s)	18, 228, 350
BstDEI	CTNAG	3 cut(s)	457, 465, 933
BstDSI	CCRYGG	2 cut(s)	141, 973
BstF5I	GGATG	4 cut(s)	319, 439, 481, 969
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	4 cut(s)	65, 184, 538, 614
BstMAI	GTCTC	4 cut(s)	324, 431, 468, 655
BstMBI	GATC	4 cut(s)	62, 181, 535, 611
BstMCI	CGRYCG	1 cut(s)	638
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	3 cut(s)	83, 125, 671
BstSCI	CCNGG	3 cut(s)	81, 123, 669
BstSFI	CTRYAG	2 cut(s)	350, 656
BstV1I	GCAGC	2 cut(s)	28, 31
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	909
BstYI	RGATCY	1 cut(s)	535
BstZI	CGGCCG	1 cut(s)	635
Bsu15I	ATCGAT	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	637
BsuTUI	ATCGAT	1 cut(s)	89
BtgI	CCRYGG	2 cut(s)	141, 973
BtgZI	GCGATG	1 cut(s)	728
BtsCI	GGATG	4 cut(s)	319, 439, 481, 969
BtsIMutI	CAGTG	1 cut(s)	863
Cac8I	GCNNGC	3 cut(s)	18, 228, 350
CaiI	CAGNNNCTG	1 cut(s)	664
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	2 cut(s)	633, 727
Cfr13I	GGNCC	5 cut(s)	121, 276, 408, 667, 810
ClaI	ATCGAT	1 cut(s)	89
CseI	GACGC	1 cut(s)	306
CsiI	ACCWGGT	1 cut(s)	669
Csp6I	GTAC	1 cut(s)	631
CspAI	ACCGGT	1 cut(s)	727
CspCI	CAANNNNNGTGG	1 cut(s)	962
CviAII	CATG	3 cut(s)	185, 190, 620
CviJI	RGCY	9 cut(s)	160, 273, 374, 557, 580, 593, 637, 820, 932
CviKI_1	RGCY	9 cut(s)	160, 273, 374, 557, 580, 593, 637, 820, 932
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	3 cut(s)	457, 465, 933
DpnI	GATC	4 cut(s)	64, 183, 537, 613
DpnII	GATC	4 cut(s)	62, 181, 535, 611
DriI	GACNNNNNGTC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	635
EagI	CGGCCG	1 cut(s)	635
Eam1104I	CTCTTC	1 cut(s)	210
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	210
EclXI	CGGCCG	1 cut(s)	635
Eco130I	CCWWGG	1 cut(s)	957
Eco31I	GGTCTC	1 cut(s)	468
Eco47I	GGWCC	5 cut(s)	121, 276, 408, 667, 810
Eco52I	CGGCCG	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	842
Eco88I	CYCGRG	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	650
EcoRII	CCWGG	3 cut(s)	81, 123, 669
EcoT14I	CCWWGG	1 cut(s)	957
EcoT22I	ATGCAT	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	957
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	3 cut(s)	188, 193, 623
FaiI	YATR	8 cut(s)	163, 186, 191, 621, 676, 678, 723, 725
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	184, 189, 619
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	42, 45, 103, 555
FokI	GGATG	4 cut(s)	326, 446, 488, 956
Fsp4HI	GCNGC	4 cut(s)	42, 45, 103, 555
FspBI	CTAG	6 cut(s)	35, 506, 560, 572, 686, 887
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	4 cut(s)	42, 45, 103, 555
GsuI	CTGGAG	2 cut(s)	69, 887
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	3 cut(s)	119, 634, 728
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	188, 193, 623
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	7 cut(s)	74, 86, 132, 328, 453, 775, 938
HpaII	CCGG	3 cut(s)	119, 634, 728
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	1 cut(s)	810
Hpy188I	TCNGA	3 cut(s)	256, 468, 752
Hpy188III	TCNNGA	8 cut(s)	35, 185, 242, 487, 596, 887, 935, 949
Hpy8I	GTNNAC	1 cut(s)	810
Hpy99I	CGWCG	1 cut(s)	931
HpyAV	CCTTC	3 cut(s)	88, 397, 542
HpyCH4III	ACNGT	4 cut(s)	145, 397, 442, 977
HpyCH4IV	ACGT	3 cut(s)	107, 626, 926
HpyCH4V	TGCA	5 cut(s)	165, 352, 569, 608, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	3 cut(s)	457, 465, 933
HpySE526I	ACGT	3 cut(s)	107, 626, 926
Hsp92II	CATG	3 cut(s)	188, 193, 623
HspAI	GCGC	1 cut(s)	346
KpnI	GGTACC	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	62, 181, 535, 611
LmnI	GCTCC	2 cut(s)	50, 489
Lsp1109I	GCAGC	2 cut(s)	28, 31
LweI	GCATC	3 cut(s)	28, 304, 556
MabI	ACCWGGT	1 cut(s)	669
MaeI	CTAG	6 cut(s)	35, 506, 560, 572, 686, 887
MaeII	ACGT	3 cut(s)	107, 626, 926
MaeIII	GTNAC	2 cut(s)	71, 287
MalI	GATC	4 cut(s)	64, 183, 537, 613
MboI	GATC	4 cut(s)	62, 181, 535, 611
MboII	GAAGA	3 cut(s)	191, 227, 769
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	8 cut(s)	308, 515, 603, 643, 650, 842, 913, 979
MlyI	GAGTC	3 cut(s)	68, 141, 337
MmeI	TCCRAC	2 cut(s)	90, 234
MnlI	CCTC	7 cut(s)	250, 358, 465, 592, 790, 791, 862
Mph1103I	ATGCAT	1 cut(s)	167
MseI	TTAA	2 cut(s)	324, 444
MslI	CAYNNNNRTG	1 cut(s)	907
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	3 cut(s)	119, 634, 728
MspR9I	CCNGG	3 cut(s)	83, 125, 671
Mva1269I	GAATGC	2 cut(s)	165, 394
MvaI	CCWGG	3 cut(s)	83, 125, 671
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	4 cut(s)	62, 181, 535, 611
NlaIII	CATG	3 cut(s)	188, 193, 623
NlaIV	GGNNCC	2 cut(s)	409, 632
NmuCI	GTSAC	2 cut(s)	71, 287
NsiI	ATGCAT	1 cut(s)	167
PagI	TCATGA	1 cut(s)	184
PctI	GAATGC	2 cut(s)	165, 394
PfeI	GAWTC	4 cut(s)	86, 453, 775, 938
PflFI	GACNNNGTC	1 cut(s)	131
PfoI	TCCNGGA	2 cut(s)	81, 123
PinAI	ACCGGT	1 cut(s)	727
PkrI	GCNGC	4 cut(s)	43, 46, 104, 556
PleI	GAGTC	3 cut(s)	68, 140, 336
PpsI	GAGTC	3 cut(s)	68, 140, 336
Ppu21I	YACGTR	1 cut(s)	627
Psp6I	CCWGG	3 cut(s)	81, 123, 669
PspGI	CCWGG	3 cut(s)	81, 123, 669
PspN4I	GGNNCC	2 cut(s)	409, 632
PspPI	GGNCC	5 cut(s)	121, 276, 408, 667, 810
PsrI	GAACNNNNNNTAC	2 cut(s)	623, 655
PstI	CTGCAG	2 cut(s)	354, 660
PstNI	CAGNNNCTG	1 cut(s)	664
PsuI	RGATCY	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	907
SaqAI	TTAA	2 cut(s)	324, 444
SatI	GCNGC	4 cut(s)	42, 45, 103, 555
Sau3AI	GATC	4 cut(s)	62, 181, 535, 611
Sau96I	GGNCC	5 cut(s)	121, 276, 408, 667, 810
SchI	GAGTC	3 cut(s)	68, 141, 337
ScrFI	CCNGG	3 cut(s)	83, 125, 671
SduI	GDGCHC	1 cut(s)	486
SexAI	ACCWGGT	1 cut(s)	669
SfaNI	GCATC	3 cut(s)	28, 304, 556
SfcI	CTRYAG	2 cut(s)	350, 656
SinI	GGWCC	5 cut(s)	121, 276, 408, 667, 810
SmiMI	CAYNNNNRTG	1 cut(s)	907
SmlI	CTYRAG	3 cut(s)	268, 323, 594
SmoI	CTYRAG	3 cut(s)	268, 323, 594
Sse9I	AATT	8 cut(s)	308, 515, 603, 643, 650, 842, 913, 979
SsiI	CCGC	4 cut(s)	102, 226, 554, 784
SspMI	CTAG	6 cut(s)	35, 506, 560, 572, 686, 887
StyD4I	CCNGG	3 cut(s)	81, 123, 669
StyI	CCWWGG	1 cut(s)	957
TaaI	ACNGT	4 cut(s)	145, 397, 442, 977
TaiI	ACGT	3 cut(s)	110, 629, 929
TaqI	TCGA	2 cut(s)	65, 89
TaqII	GACCGA	1 cut(s)	827
TasI	AATT	8 cut(s)	308, 515, 603, 643, 650, 842, 913, 979
TauI	GCSGC	2 cut(s)	105, 557
TfiI	GAWTC	4 cut(s)	86, 453, 775, 938
Tru1I	TTAA	2 cut(s)	324, 444
Tru9I	TTAA	2 cut(s)	324, 444
TscAI	CASTG	1 cut(s)	870
TseFI	GTSAC	2 cut(s)	71, 287
TseI	GCWGC	2 cut(s)	41, 44
Tsp45I	GTSAC	2 cut(s)	71, 287
TspDTI	ATGAA	6 cut(s)	26, 219, 236, 441, 492, 561
TspGWI	ACGGA	2 cut(s)	377, 526
TspRI	CASTG	1 cut(s)	870
Tth111I	GACNNNGTC	1 cut(s)	131
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	5 cut(s)	121, 276, 408, 667, 810
XapI	RAATTY	3 cut(s)	515, 650, 842
XbaI	TCTAGA	2 cut(s)	34, 886
XspI	CTAG	6 cut(s)	35, 506, 560, 572, 686, 887
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.