Rh2DG281300

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008832
Physical Location & Seq
Forward (+)
31895437 .. 31896735
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG281300.1

Sequence Viewer

Length: 1032 bp
ATGGAAATGATTAAGGAAGCAGGGGTAATGTTTGGAGAGGCTACTGCAGCAGCAGTACTTGGACCGCCCTGTGAAGGCGTCCTGGAATCGATAAAGAAGTGTTGGATGTTTGATAGTCCCGTCCTGGATAGCGTCAAATCCACGGTGGAGTACTTAGAGTCATTGATTCCGCAGATGGAAGATCATAACATGAAGTTGGCTGGCCGTCAAGATGAACTCAAAGAACTCAAAGAACAGATGGAGCGTGGCAGAAAGCTTCTTGAGGAGTTGTCGGAGGTTAATGTCCTTAGCTGCTTCAAGACAAGTTACAACCACCAACTTGTTGCATTGGATGCGTCTCTTAAGAGTCTGGTGAGGAAACTGCGCCTGCAGTTAGCAACTGATGTGAAGGAGGTCTTGGTTTTGGAGAAGGAGACTGCTAAGGTTGTGAAGGGGACCAAGAGAAAACTTTACGAAGTGGATGAGACTGTTAAAGCAGGATTCTTAGATATGCAGAAGAGGCAGGATGATATGCTCCAGCAAATGATGAAGAAACTAGAACGGAAGGATTTGGCAAACCAAGGGGGAGCGTGGCTTGAAGCGTCGGCTACAGTAGCTGCACTAGCAGAACTTGATGATTCGGCTCGAAAGGTTATTACTTTTTCGTCCGCCACTACTGAGGTGGTGACGACGGCCGTGTGCGAAGCGCTCTTCAAAGCGGCAGAGCAGGCGGACCAGATATTGAATTTGTTAGAAAAGACGACAGCAGAAAATAAAGAGAGATCTTATATCCCGGTTGGCGAACTAAAGGATTTCAGAATGTCGATAGAGGACGGGGTGGATCTCCTCCGCAACTGCCCCAAGGTTCTTGAGTGGACCGATGAGCTACAGTATGAATACACCAACAAATTTCTTGCTTTGGGCAAAACACTCGAGGCACTTTACAATCGTCTAGCTGGAATACGGCCACTTAAATGGAAGTGTGGAAAATGTGACGAGTCTTGTGCAACAACTTCAACTTCATTTCAGGATTCTGCTAGATTTTGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Pkinase zf-RVT

Protein Analysis

343

Amino Acids

38.6

Weight (kDa)

5.3

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 14 - 139 1.3e-14 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 65, 170, 648, 698, 710, 829
AclWI GGATC 1 cut(s) 828
AcoI YGGCCR 3 cut(s) 202, 672, 944
AcsI RAATTY 2 cut(s) 724, 887
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 2 cut(s) 57, 152
AfeI AGCGCT 1 cut(s) 687
AfiI CCNNNNNNNGG 1 cut(s) 74
AflII CTTAAG 1 cut(s) 341
AgsI TTSAA 5 cut(s) 298, 578, 694, 724, 996
AjnI CCWGG 2 cut(s) 81, 123
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 5 cut(s) 256, 291, 596, 865, 935
AluI AGCT 5 cut(s) 256, 291, 596, 865, 935
Alw26I GTCTC 3 cut(s) 342, 407, 458
AlwI GGATC 1 cut(s) 828
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 911
Aor51HI AGCGCT 1 cut(s) 687
AoxI GGCC 3 cut(s) 202, 672, 944
ApeKI GCWGC 4 cut(s) 47, 50, 291, 596
ApoI RAATTY 2 cut(s) 724, 887
AspLEI GCGC 2 cut(s) 366, 688
AspS9I GGNCC 4 cut(s) 62, 435, 712, 855
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 2 cut(s) 364, 676
AvaI CYCGRG 1 cut(s) 911
AvaII GGWCC 4 cut(s) 62, 435, 712, 855
BbvI GCAGC 4 cut(s) 59, 62, 278, 583
BccI CCATC 2 cut(s) 169, 232
BceAI ACGGC 4 cut(s) 189, 659, 687, 959
BcgI CGANNNNNNTGC 4 cut(s) 892, 926, 965, 999
BciT130I CCWGG 2 cut(s) 83, 125
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 3 cut(s) 342, 407, 458
BfaI CTAG 4 cut(s) 536, 602, 932, 1017
BfmI CTRYAG 4 cut(s) 45, 368, 588, 866
BfoI RGCGCY 1 cut(s) 689
BfrI CTTAAG 1 cut(s) 341
BglII AGATCT 1 cut(s) 761
BisI GCNGC 5 cut(s) 48, 51, 292, 597, 699
BlsI GCNGC 5 cut(s) 49, 52, 293, 598, 700
BmcAI AGTACT 2 cut(s) 57, 152
Bme1390I CCNGG 3 cut(s) 83, 125, 773
Bme18I GGWCC 4 cut(s) 62, 435, 712, 855
BmeT110I CYCGRG 1 cut(s) 911
BmgT120I GGNCC 4 cut(s) 62, 435, 712, 855
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 3 cut(s) 83, 125, 773
BmsI GCATC 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 500
Bpu10I CCTNAGC 2 cut(s) 287, 420
BpuEI CTTGAG 2 cut(s) 281, 869
BpuMI CCSGG 1 cut(s) 773
Bsa29I ATCGAT 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 141, 559, 840
Bsc4I CCNNNNNNNGG 1 cut(s) 74
BseBI CCWGG 2 cut(s) 83, 125
BseCI ATCGAT 1 cut(s) 89
BseDI CCNNGG 3 cut(s) 141, 559, 840
BseGI GGATG 4 cut(s) 111, 337, 466, 511
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 648
BseRI GAGGAG 2 cut(s) 278, 815
BseX3I CGGCCG 1 cut(s) 672
BseXI GCAGC 4 cut(s) 59, 62, 278, 583
BsgI GTGCAG 1 cut(s) 582
Bsh1285I CGRYCG 1 cut(s) 675
BshFI GGCC 3 cut(s) 204, 674, 946
BshVI ATCGAT 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 675
BsiHKCI CYCGRG 1 cut(s) 911
BsiSI CCGG 1 cut(s) 773
BslFI GGGAC 2 cut(s) 102, 448
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 3 cut(s) 342, 407, 458
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 2 cut(s) 102, 448
BsnI GGCC 3 cut(s) 204, 674, 946
BsoBI CYCGRG 1 cut(s) 911
Bsp143I GATC 3 cut(s) 181, 761, 820
BspACI CCGC 6 cut(s) 65, 170, 648, 698, 710, 829
BspANI GGCC 3 cut(s) 204, 674, 946
BspCNI CTCAG 1 cut(s) 649
BspDI ATCGAT 1 cut(s) 89
BspLI GGNNCC 1 cut(s) 436
BspMAI CTGCAG 2 cut(s) 49, 372
BspPI GGATC 1 cut(s) 828
BspQI GCTCTTC 1 cut(s) 695
BspTI CTTAAG 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 141, 559, 840
BssMI GATC 3 cut(s) 181, 761, 820
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 559, 840
Bst2UI CCWGG 2 cut(s) 83, 125
Bst4CI ACNGT 4 cut(s) 145, 469, 592, 870
Bst6I CTCTTC 2 cut(s) 491, 695
BstACI GRCGYC 1 cut(s) 78
BstAFI CTTAAG 1 cut(s) 341
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 3 cut(s) 202, 368, 708
BstDEI CTNAG 5 cut(s) 154, 287, 420, 484, 657
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 4 cut(s) 111, 337, 466, 511
BstH2I RGCGCY 1 cut(s) 689
BstHHI GCGC 2 cut(s) 366, 688
BstKTI GATC 3 cut(s) 184, 764, 823
BstMAI GTCTC 3 cut(s) 342, 407, 458
BstMBI GATC 3 cut(s) 181, 761, 820
BstMCI CGRYCG 1 cut(s) 675
BstMWI GCNNNNNNNGC 6 cut(s) 47, 332, 499, 593, 602, 707
BstNI CCWGG 2 cut(s) 83, 125
BstSCI CCNGG 3 cut(s) 81, 123, 771
BstSFI CTRYAG 4 cut(s) 45, 368, 588, 866
BstV1I GCAGC 4 cut(s) 59, 62, 278, 583
BstX2I RGATCY 2 cut(s) 761, 820
BstXI CCANNNNNNTGG 1 cut(s) 954
BstYI RGATCY 2 cut(s) 761, 820
BstZI CGGCCG 1 cut(s) 672
Bsu15I ATCGAT 1 cut(s) 89
BsuRI GGCC 3 cut(s) 204, 674, 946
BsuTUI ATCGAT 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 4 cut(s) 111, 337, 466, 511
Cac8I GCNNGC 3 cut(s) 202, 368, 708
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 2 cut(s) 366, 688
Cfr13I GGNCC 4 cut(s) 62, 435, 712, 855
ClaI ATCGAT 1 cut(s) 89
CseI GACGC 4 cut(s) 67, 121, 324, 570
Csp6I GTAC 2 cut(s) 56, 151
CviAII CATG 1 cut(s) 190
CviQI GTAC 2 cut(s) 56, 151
DdeI CTNAG 5 cut(s) 154, 287, 420, 484, 657
DpnI GATC 3 cut(s) 183, 763, 822
DpnII GATC 3 cut(s) 181, 761, 820
EaeI YGGCCR 3 cut(s) 202, 672, 944
EagI CGGCCG 1 cut(s) 672
Eam1104I CTCTTC 2 cut(s) 491, 695
EarI CTCTTC 2 cut(s) 491, 695
EciI GGCGGA 2 cut(s) 637, 725
EclXI CGGCCG 1 cut(s) 672
Eco130I CCWWGG 2 cut(s) 559, 840
Eco47I GGWCC 4 cut(s) 62, 435, 712, 855
Eco47III AGCGCT 1 cut(s) 687
Eco52I CGGCCG 1 cut(s) 672
Eco88I CYCGRG 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 81, 123
EcoT14I CCWWGG 2 cut(s) 559, 840
ErhI CCWWGG 2 cut(s) 559, 840
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 1 cut(s) 193
FaiI YATR 6 cut(s) 186, 191, 491, 512, 768, 873
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 2 cut(s) 102, 448
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 48, 51, 292, 597, 699
FokI GGATG 4 cut(s) 118, 344, 473, 518
Fsp4HI GCNGC 5 cut(s) 48, 51, 292, 597, 699
FspBI CTAG 4 cut(s) 536, 602, 932, 1017
GlaI GCGC 2 cut(s) 365, 687
GluI GCNGC 5 cut(s) 48, 51, 292, 597, 699
GsuI CTGGAG 1 cut(s) 500
HaeII RGCGCY 1 cut(s) 689
HaeIII GGCC 3 cut(s) 204, 674, 946
HapII CCGG 1 cut(s) 773
HgaI GACGC 4 cut(s) 67, 121, 324, 570
HhaI GCGC 2 cut(s) 366, 688
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 2 cut(s) 364, 686
HinP1I GCGC 2 cut(s) 364, 686
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 8 cut(s) 86, 158, 166, 346, 480, 617, 977, 1010
HpaII CCGG 1 cut(s) 773
HphI GGTGA 2 cut(s) 364, 676
Hpy166II GTNNAC 1 cut(s) 855
Hpy188I TCNGA 2 cut(s) 274, 797
Hpy188III TCNNGA 5 cut(s) 209, 260, 298, 848, 1007
Hpy8I GTNNAC 1 cut(s) 855
Hpy99I CGWCG 2 cut(s) 586, 673
HpyAV CCTTC 5 cut(s) 68, 382, 403, 424, 538
HpyCH4III ACNGT 4 cut(s) 145, 469, 592, 870
HpyCH4V TGCA 6 cut(s) 47, 326, 370, 493, 599, 986
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 332, 499, 593, 602, 707
HpyF3I CTNAG 5 cut(s) 154, 287, 420, 484, 657
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 2 cut(s) 364, 686
Kzo9I GATC 3 cut(s) 181, 761, 820
LguI GCTCTTC 1 cut(s) 695
LmnI GCTCC 3 cut(s) 241, 519, 566
Lsp1109I GCAGC 4 cut(s) 59, 62, 278, 583
LweI GCATC 1 cut(s) 322
MaeI CTAG 4 cut(s) 536, 602, 932, 1017
MaeIII GTNAC 3 cut(s) 305, 664, 971
MalI GATC 3 cut(s) 183, 763, 822
MboI GATC 3 cut(s) 181, 761, 820
MboII GAAGA 4 cut(s) 191, 508, 541, 682
MflI RGATCY 2 cut(s) 761, 820
MluCI AATT 2 cut(s) 724, 887
MlyI GAGTC 3 cut(s) 167, 355, 986
MmeI TCCRAC 2 cut(s) 83, 252
MseI TTAA 5 cut(s) 12, 279, 342, 471, 951
MslI CAYNNNNRTG 1 cut(s) 952
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 1 cut(s) 773
MspR9I CCNGG 3 cut(s) 83, 125, 773
MvaI CCWGG 2 cut(s) 83, 125
MwoI GCNNNNNNNGC 6 cut(s) 47, 332, 499, 593, 602, 707
NciI CCSGG 1 cut(s) 773
NdeII GATC 3 cut(s) 181, 761, 820
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 664, 971
PaeR7I CTCGAG 1 cut(s) 911
PciSI GCTCTTC 1 cut(s) 695
PfeI GAWTC 5 cut(s) 86, 166, 480, 617, 1010
PfoI TCCNGGA 2 cut(s) 81, 123
PkrI GCNGC 5 cut(s) 49, 52, 293, 598, 700
PleI GAGTC 3 cut(s) 166, 354, 985
PpsI GAGTC 3 cut(s) 166, 354, 985
Psp6I CCWGG 2 cut(s) 81, 123
PspGI CCWGG 2 cut(s) 81, 123
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 4 cut(s) 62, 435, 712, 855
PspXI VCTCGAGB 1 cut(s) 911
PstI CTGCAG 2 cut(s) 49, 372
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 2 cut(s) 761, 820
RsaI GTAC 2 cut(s) 57, 152
RsaNI GTAC 2 cut(s) 56, 151
RseI CAYNNNNRTG 1 cut(s) 952
SapI GCTCTTC 1 cut(s) 695
SaqAI TTAA 5 cut(s) 12, 279, 342, 471, 951
SatI GCNGC 5 cut(s) 48, 51, 292, 597, 699
Sau3AI GATC 3 cut(s) 181, 761, 820
Sau96I GGNCC 4 cut(s) 62, 435, 712, 855
ScaI AGTACT 2 cut(s) 57, 152
SchI GAGTC 3 cut(s) 167, 355, 986
ScrFI CCNGG 3 cut(s) 83, 125, 773
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 4 cut(s) 45, 368, 588, 866
Sfr274I CTCGAG 1 cut(s) 911
SinI GGWCC 4 cut(s) 62, 435, 712, 855
SlaI CTCGAG 1 cut(s) 911
SmiMI CAYNNNNRTG 1 cut(s) 952
SmlI CTYRAG 4 cut(s) 260, 341, 848, 911
SmoI CTYRAG 4 cut(s) 260, 341, 848, 911
Sse9I AATT 2 cut(s) 724, 887
SsiI CCGC 6 cut(s) 65, 170, 648, 698, 710, 829
SspMI CTAG 4 cut(s) 536, 602, 932, 1017
StyD4I CCNGG 3 cut(s) 81, 123, 771
StyI CCWWGG 2 cut(s) 559, 840
TaaI ACNGT 4 cut(s) 145, 469, 592, 870
TaqI TCGA 4 cut(s) 89, 625, 803, 912
TaqII GACCGA 1 cut(s) 872
TasI AATT 2 cut(s) 724, 887
TatI WGTACW 2 cut(s) 55, 150
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 5 cut(s) 86, 166, 480, 617, 1010
Tru1I TTAA 5 cut(s) 12, 279, 342, 471, 951
Tru9I TTAA 5 cut(s) 12, 279, 342, 471, 951
TseFI GTSAC 2 cut(s) 664, 971
TseI GCWGC 4 cut(s) 47, 50, 291, 596
Tsp45I GTSAC 2 cut(s) 664, 971
TspDTI ATGAA 5 cut(s) 206, 228, 542, 888, 990
TspGWI ACGGA 1 cut(s) 556
Vha464I CTTAAG 1 cut(s) 341
VpaK11BI GGWCC 4 cut(s) 62, 435, 712, 855
XapI RAATTY 2 cut(s) 724, 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XhoI CTCGAG 1 cut(s) 911
XspI CTAG 4 cut(s) 536, 602, 932, 1017
ZrmI AGTACT 2 cut(s) 57, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.