Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008832

Physical Location & Seq

Genomic Coordinates Reverse (-)

60955835 .. 60957946

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAAATGATGAAGCGAGCAGGGGAGATGTTTCTAGATGCTGCTGCTGGAGCAGTATTTGGATCGACCTGTGACTCCTTCCTGGAATCGATAGAGAAGTGCAGCACGTTGGATATTCCGGTCCTGGACAGAGTCAAATCCACGGTGGAGAGTTTAGAGCTATGCATTCCAAAGATGGAAGATCATGACATGACCTTTGGAGACGAACTAAAAGAAGAGATGAAGCGGGCAAGAAAGTTTCTTGACAAGTTGTCGGAGGATAATGACTTGAGCTGGTCCAAGACAAGTGACAACGACCAACTTGTTGAATTGGATGCGTCTCTTAAGAGTCTGGCGGGGAAACTGCGCCTGCAGTTAGCAACGGAGGTCTTGGTTTTGGGAAAGCAGAATGCTACGGTTGTGAAAGGGACCAAGAGAAAACTTGATGAAGTGAATCAGACTCTTGACGCAAGATTCTTAGATATACAGAAGAGGCAGGATGATATGCTCCGGAAAATTATGAAGAAGCTAGAACGGAAGGATTTGGCAAACCAAGTGGATCCGCTAAATGAAGGGGCGGCTCTAGTAGATGCACTACGAGAGCTTGATGATGTGGCTCAAGCGGGAATTGTGGATCGTATAGGGCCTATCTGGTATCGGCGGGACTATCTCAGCACAATAGAGTATATCGCCCGGACGTTTGGATTGGTAGAAAAAAAGACGGCAGAAAATAAAGCGATGGTTTATATACCGGTTGGCGAAGTAAGGGATTTCAGAATGAAGATAAAGGAAGGGGTGAATCTCCTCCGCAACTGCCCCGAGGTCGCTGTGTGGACCGATGAGCTGAAGTTAGAATACACCAACAAATTTTTTGCTTTGCACAAAACACTGGAGGCACTTAACAATCGTCTAGCTGGAATACGACCACTGCAATGGAATTGCAGAAAATGTGACAAGTCTTCTGGAACGACTTCAACTTCAATTGTAGATTCTGCAGGATTTTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

329

Amino Acids

37.28

Weight (kDa)

5.69

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23270
rosa_chinensis	RchiOBHm_Chr2g0104661
rosa_laevigata	RLG00000017339 RLG00000018393
rosa_multiflora	Rmu_sc0001618.1_g000010 Rmu_sc0002316.1_g000024 Rmu_sc0009463.1_g000009
rosa_roxburghii	Rroxscaffold_2G00125910 Rroxscaffold_2G00138860
rosa_rugosa	Rorug02G0121700 Rorug02G0216500
rosa_samantha	Rh2AG171900 Rh2BG179400 Rh2BG285200 Rh2BG285300 Rh2BG285400 Rh2CG177000 Rh2DG178200 Rh2DG281000 Rh2DG281300 Rh4CG069800
rosa_wichuraiana	Rw2G013450 Rw2G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	489
AciI	CCGC	7 cut(s)	226, 335, 542, 557, 602, 640, 787
AclWI	GGATC	4 cut(s)	70, 533, 546, 621
AcsI	RAATTY	1 cut(s)	845
AcuI	CTGAAG	1 cut(s)	845
AflII	CTTAAG	1 cut(s)	323
AgeI	ACCGGT	1 cut(s)	730
AgsI	TTSAA	3 cut(s)	308, 954, 960
AhdI	GACNNNNNGTC	1 cut(s)	250
AjnI	CCWGG	2 cut(s)	81, 123
AluBI	AGCT	6 cut(s)	160, 273, 508, 583, 823, 893
AluI	AGCT	6 cut(s)	160, 273, 508, 583, 823, 893
Alw26I	GTCTC	2 cut(s)	195, 324
AlwI	GGATC	4 cut(s)	70, 533, 546, 621
Ama87I	CYCGRG	1 cut(s)	797
Aor13HI	TCCGGA	1 cut(s)	489
AoxI	GGCC	1 cut(s)	623
ApeKI	GCWGC	3 cut(s)	41, 44, 102
ApoI	RAATTY	1 cut(s)	845
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AsiGI	ACCGGT	1 cut(s)	730
Asp700I	GAANNNNTTC	1 cut(s)	949
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	5 cut(s)	121, 276, 408, 623, 813
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	1 cut(s)	787
AvaI	CYCGRG	1 cut(s)	797
AvaII	GGWCC	4 cut(s)	121, 276, 408, 813
BamHI	GGATCC	1 cut(s)	538
BarI	GAAGNNNNNNTAC	2 cut(s)	818, 850
BbsI	GAAGAC	1 cut(s)	930
BbvI	GCAGC	3 cut(s)	28, 31, 114
BccI	CCATC	2 cut(s)	169, 712
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	2 cut(s)	83, 125
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	195, 324
BfaI	CTAG	4 cut(s)	35, 509, 563, 890
BfmI	CTRYAG	2 cut(s)	350, 972
BfrI	CTTAAG	1 cut(s)	323
BisI	GCNGC	4 cut(s)	42, 45, 103, 558
BlsI	GCNGC	4 cut(s)	43, 46, 104, 559
Bme1390I	CCNGG	3 cut(s)	83, 125, 673
Bme18I	GGWCC	4 cut(s)	121, 276, 408, 813
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	797
BmgT120I	GGNCC	5 cut(s)	121, 276, 408, 623, 813
BmiI	GGNNCC	2 cut(s)	409, 540
BmrFI	CCNGG	3 cut(s)	83, 125, 673
BmsI	GCATC	3 cut(s)	28, 304, 559
BpiI	GAAGAC	1 cut(s)	930
BpmI	CTGGAG	2 cut(s)	69, 890
BpuEI	CTTGAG	2 cut(s)	289, 582
BpuMI	CCSGG	1 cut(s)	673
Bsa29I	ATCGAT	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	141, 798
BsaWI	WCCGGW	3 cut(s)	118, 489, 730
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	1 cut(s)	873
Bse3DI	GCAATG	1 cut(s)	917
BseAI	TCCGGA	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	83, 125
BseCI	ATCGAT	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	141, 798
BseGI	GGATG	2 cut(s)	319, 484
BseMI	GCAATG	1 cut(s)	917
BseMII	CTCAG	1 cut(s)	664
BseNI	ACTGG	1 cut(s)	873
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	3 cut(s)	28, 31, 114
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	625
BshTI	ACCGGT	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	797
BsiSI	CCGG	4 cut(s)	119, 490, 673, 731
BslFI	GGGAC	2 cut(s)	421, 656
BsmAI	GTCTC	2 cut(s)	195, 324
BsmBI	CGTCTC	2 cut(s)	195, 324
BsmFI	GGGAC	2 cut(s)	421, 656
BsmI	GAATGC	2 cut(s)	165, 394
BsnI	GGCC	1 cut(s)	625
BsoBI	CYCGRG	1 cut(s)	797
Bsp13I	TCCGGA	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	62, 181, 538, 613
BspACI	CCGC	7 cut(s)	226, 335, 542, 557, 602, 640, 787
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	1 cut(s)	663
BspDI	ATCGAT	1 cut(s)	89
BspEI	TCCGGA	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	409, 540
BspMAI	CTGCAG	2 cut(s)	354, 976
BspPI	GGATC	4 cut(s)	70, 533, 546, 621
BspTI	CTTAAG	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	917
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	873
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	2 cut(s)	141, 798
BssMI	GATC	4 cut(s)	62, 181, 538, 613
Bst2UI	CCWGG	2 cut(s)	83, 125
Bst4CI	ACNGT	2 cut(s)	145, 397
Bst6I	CTCTTC	2 cut(s)	210, 464
BstAFI	CTTAAG	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	18, 228, 350
BstDEI	CTNAG	2 cut(s)	457, 650
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	319, 484
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	4 cut(s)	65, 184, 541, 616
BstMAI	GTCTC	2 cut(s)	195, 324
BstMBI	GATC	4 cut(s)	62, 181, 538, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	83, 125
BstSCI	CCNGG	3 cut(s)	81, 123, 671
BstSFI	CTRYAG	2 cut(s)	350, 972
BstV1I	GCAGC	3 cut(s)	28, 31, 114
BstV2I	GAAGAC	1 cut(s)	930
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	912
BstYI	RGATCY	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	625
BsuTUI	ATCGAT	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	731
BtsCI	GGATG	2 cut(s)	319, 484
BtsI	GCAGTG	1 cut(s)	905
BtsIMutI	CAGTG	2 cut(s)	866, 905
Cac8I	GCNNGC	3 cut(s)	18, 228, 350
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	5 cut(s)	121, 276, 408, 623, 813
ClaI	ATCGAT	1 cut(s)	89
CseI	GACGC	2 cut(s)	306, 455
CspAI	ACCGGT	1 cut(s)	730
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	2 cut(s)	185, 190
CviJI	RGCY	9 cut(s)	160, 273, 508, 560, 583, 596, 625, 823, 893
CviKI_1	RGCY	9 cut(s)	160, 273, 508, 560, 583, 596, 625, 823, 893
DdeI	CTNAG	2 cut(s)	457, 650
DpnI	GATC	4 cut(s)	64, 183, 540, 615
DpnII	GATC	4 cut(s)	62, 181, 538, 613
DriI	GACNNNNNGTC	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	210, 464
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	2 cut(s)	210, 464
Eco47I	GGWCC	4 cut(s)	121, 276, 408, 813
Eco57I	CTGAAG	1 cut(s)	845
Eco88I	CYCGRG	1 cut(s)	797
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	81, 123
EcoT22I	ATGCAT	1 cut(s)	167
Esp3I	CGTCTC	2 cut(s)	195, 324
FaeI	CATG	2 cut(s)	188, 193
FaqI	GGGAC	2 cut(s)	421, 656
FatI	CATG	2 cut(s)	184, 189
FauI	CCCGC	4 cut(s)	219, 328, 595, 633
Fnu4HI	GCNGC	4 cut(s)	42, 45, 103, 558
FokI	GGATG	2 cut(s)	326, 491
Fsp4HI	GCNGC	4 cut(s)	42, 45, 103, 558
FspBI	CTAG	4 cut(s)	35, 509, 563, 890
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	4 cut(s)	42, 45, 103, 558
GsuI	CTGGAG	2 cut(s)	69, 890
HaeIII	GGCC	1 cut(s)	625
HapII	CCGG	4 cut(s)	119, 490, 673, 731
HgaI	GACGC	2 cut(s)	306, 455
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	188, 193
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	9 cut(s)	74, 86, 132, 328, 433, 439, 453, 778, 968
HpaII	CCGG	4 cut(s)	119, 490, 673, 731
HphI	GGTGA	1 cut(s)	787
Hpy166II	GTNNAC	1 cut(s)	813
Hpy188I	TCNGA	3 cut(s)	256, 438, 755
Hpy188III	TCNNGA	6 cut(s)	35, 185, 242, 443, 490, 942
Hpy8I	GTNNAC	1 cut(s)	813
HpyAV	CCTTC	4 cut(s)	88, 511, 545, 764
HpyCH4III	ACNGT	2 cut(s)	145, 397
HpyCH4IV	ACGT	2 cut(s)	107, 677
HpyCH4V	TGCA	8 cut(s)	102, 165, 352, 572, 859, 910, 921, 974
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	457, 650
HpySE526I	ACGT	2 cut(s)	107, 677
Hsp92II	CATG	2 cut(s)	188, 193
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	62, 181, 538, 613
LmnI	GCTCC	2 cut(s)	50, 492
Lsp1109I	GCAGC	3 cut(s)	28, 31, 114
LweI	GCATC	3 cut(s)	28, 304, 559
MaeI	CTAG	4 cut(s)	35, 509, 563, 890
MaeII	ACGT	2 cut(s)	107, 677
MaeIII	GTNAC	3 cut(s)	71, 287, 929
MalI	GATC	4 cut(s)	64, 183, 540, 615
MboI	GATC	4 cut(s)	62, 181, 538, 613
MboII	GAAGA	6 cut(s)	191, 227, 481, 514, 772, 930
MfeI	CAATTG	1 cut(s)	960
MflI	RGATCY	1 cut(s)	538
MluCI	AATT	6 cut(s)	308, 495, 606, 845, 916, 960
MlyI	GAGTC	4 cut(s)	68, 141, 337, 433
MmeI	TCCRAC	2 cut(s)	90, 234
MnlI	CCTC	6 cut(s)	250, 358, 465, 793, 794, 865
Mph1103I	ATGCAT	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	949
MseI	TTAA	2 cut(s)	324, 879
MslI	CAYNNNNRTG	1 cut(s)	910
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	4 cut(s)	119, 490, 673, 731
MspR9I	CCNGG	3 cut(s)	83, 125, 673
MunI	CAATTG	1 cut(s)	960
Mva1269I	GAATGC	2 cut(s)	165, 394
MvaI	CCWGG	2 cut(s)	83, 125
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	4 cut(s)	62, 181, 538, 613
NlaIII	CATG	2 cut(s)	188, 193
NlaIV	GGNNCC	2 cut(s)	409, 540
NmuCI	GTSAC	3 cut(s)	71, 287, 929
NsiI	ATGCAT	1 cut(s)	167
PagI	TCATGA	1 cut(s)	184
PctI	GAATGC	2 cut(s)	165, 394
PdmI	GAANNNNTTC	1 cut(s)	949
PfeI	GAWTC	5 cut(s)	86, 433, 453, 778, 968
PflFI	GACNNNGTC	1 cut(s)	131
PfoI	TCCNGGA	2 cut(s)	81, 123
PinAI	ACCGGT	1 cut(s)	730
PkrI	GCNGC	4 cut(s)	43, 46, 104, 559
PleI	GAGTC	4 cut(s)	68, 140, 336, 433
PpsI	GAGTC	4 cut(s)	68, 140, 336, 433
Psp6I	CCWGG	2 cut(s)	81, 123
PspGI	CCWGG	2 cut(s)	81, 123
PspN4I	GGNNCC	2 cut(s)	409, 540
PspPI	GGNCC	5 cut(s)	121, 276, 408, 623, 813
PstI	CTGCAG	2 cut(s)	354, 976
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	910
SaqAI	TTAA	2 cut(s)	324, 879
SatI	GCNGC	4 cut(s)	42, 45, 103, 558
Sau3AI	GATC	4 cut(s)	62, 181, 538, 613
Sau96I	GGNCC	5 cut(s)	121, 276, 408, 623, 813
SchI	GAGTC	4 cut(s)	68, 141, 337, 433
ScrFI	CCNGG	3 cut(s)	83, 125, 673
SfaNI	GCATC	3 cut(s)	28, 304, 559
SfcI	CTRYAG	2 cut(s)	350, 972
SinI	GGWCC	4 cut(s)	121, 276, 408, 813
SmiMI	CAYNNNNRTG	1 cut(s)	910
SmlI	CTYRAG	3 cut(s)	268, 323, 597
SmoI	CTYRAG	3 cut(s)	268, 323, 597
Sse9I	AATT	6 cut(s)	308, 495, 606, 845, 916, 960
SsiI	CCGC	7 cut(s)	226, 335, 542, 557, 602, 640, 787
SspMI	CTAG	4 cut(s)	35, 509, 563, 890
StyD4I	CCNGG	3 cut(s)	81, 123, 671
TaaI	ACNGT	2 cut(s)	145, 397
TaiI	ACGT	2 cut(s)	110, 680
TaqI	TCGA	2 cut(s)	65, 89
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	6 cut(s)	308, 495, 606, 845, 916, 960
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	5 cut(s)	86, 433, 453, 778, 968
Tru1I	TTAA	2 cut(s)	324, 879
Tru9I	TTAA	2 cut(s)	324, 879
TscAI	CASTG	2 cut(s)	873, 912
TseFI	GTSAC	3 cut(s)	71, 287, 929
TseI	GCWGC	3 cut(s)	41, 44, 102
Tsp45I	GTSAC	3 cut(s)	71, 287, 929
TspDTI	ATGAA	6 cut(s)	26, 236, 441, 515, 564, 773
TspGWI	ACGGA	2 cut(s)	377, 529
TspRI	CASTG	2 cut(s)	873, 912
Tth111I	GACNNNGTC	1 cut(s)	131
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	4 cut(s)	121, 276, 408, 813
XapI	RAATTY	1 cut(s)	845
XbaI	TCTAGA	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	949
XspI	CTAG	4 cut(s)	35, 509, 563, 890
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.