Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008832

Physical Location & Seq

Genomic Coordinates Forward (+)

31347868 .. 31348344

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG285400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGACAGGGGGAGCGTGGCTTGAAGCGTCGGCTACAGTAGCTGCACTAGCAGAACTTGATGATTCGGCTCGAAAGGTTATTACTTTTTCGTCCGCCACTACTGAGGTGGTGACGACGGCCGTGTGCGAAGCGCTCTTCAAAGCGGCAGAGCAGGCGGACCAGATATTGAATTTGTTAGAAAAGACGACAGCAGAAAATAAAGAGAGATCTTATATCCCGGTTGGCGAACTAAAGGATTTCAGAATGTCGATAGAGGACGGGGTGGATCTCCTCCGCAACTGCCCCAAGGTTCTTGAGTGGACCGATGAGCTACAGTATGAATACACCAACAAATTTCTTGCTTTGGGCAAAACACTCGAGGCACTTTACAATCGTCTAGCTGGAATACGGCCACTTAAATGGAAGTGTGGAAAATGTGACGAGTCTTGTGCAACAACTTCAACTTCATTTCAGGATTCTGCTAGATTTTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

4.9

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008832)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23270
rosa_chinensis	RchiOBHm_Chr2g0104661
rosa_laevigata	RLG00000017339 RLG00000018393
rosa_multiflora	Rmu_sc0001618.1_g000010 Rmu_sc0002316.1_g000024 Rmu_sc0009463.1_g000009
rosa_roxburghii	Rroxscaffold_2G00125910 Rroxscaffold_2G00138860
rosa_rugosa	Rorug02G0121700 Rorug02G0216500
rosa_samantha	Rh2AG171900 Rh2BG179400 Rh2BG285200 Rh2BG285300 Rh2BG285400 Rh2CG177000 Rh2DG178200 Rh2DG281000 Rh2DG281300 Rh4CG069800
rosa_wichuraiana	Rw2G013450 Rw2G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	93, 143, 155, 274
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	2 cut(s)	117, 389
AcsI	RAATTY	2 cut(s)	169, 332
AfeI	AGCGCT	1 cut(s)	132
AgsI	TTSAA	4 cut(s)	23, 139, 169, 441
AluBI	AGCT	3 cut(s)	41, 310, 380
AluI	AGCT	3 cut(s)	41, 310, 380
AlwI	GGATC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	356
Aor51HI	AGCGCT	1 cut(s)	132
AoxI	GGCC	2 cut(s)	117, 389
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	2 cut(s)	169, 332
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	157, 300
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	157, 300
BbvI	GCAGC	1 cut(s)	28
BceAI	ACGGC	3 cut(s)	104, 132, 404
BcgI	CGANNNNNNTGC	4 cut(s)	337, 371, 410, 444
BcnI	CCSGG	1 cut(s)	218
BfaI	CTAG	3 cut(s)	47, 377, 462
BfmI	CTRYAG	2 cut(s)	33, 311
BfoI	RGCGCY	1 cut(s)	134
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	2 cut(s)	42, 144
BlsI	GCNGC	2 cut(s)	43, 145
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	2 cut(s)	157, 300
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	157, 300
BmrFI	CCNGG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	260
BseX3I	CGGCCG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	119, 391
BsiEI	CGRYCG	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	218
BsnI	GGCC	2 cut(s)	119, 391
BsoBI	CYCGRG	1 cut(s)	356
Bsp143I	GATC	2 cut(s)	206, 265
BspACI	CCGC	4 cut(s)	93, 143, 155, 274
BspANI	GGCC	2 cut(s)	119, 391
BspCNI	CTCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	273
BspQI	GCTCTTC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	206, 265
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	37, 315
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	209, 268
BstMBI	GATC	2 cut(s)	206, 265
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 152
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	2 cut(s)	33, 311
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	206, 265
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstYI	RGATCY	2 cut(s)	206, 265
BstZI	CGGCCG	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	119, 391
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	157, 300
CseI	GACGC	1 cut(s)	15
CviJI	RGCY	8 cut(s)	19, 32, 41, 68, 119, 310, 380, 391
CviKI_1	RGCY	8 cut(s)	19, 32, 41, 68, 119, 310, 380, 391
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	208, 267
DpnII	GATC	2 cut(s)	206, 265
EaeI	YGGCCR	2 cut(s)	117, 389
EagI	CGGCCG	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	2 cut(s)	82, 170
EclXI	CGGCCG	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	157, 300
Eco47III	AGCGCT	1 cut(s)	132
Eco52I	CGGCCG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaiI	YATR	2 cut(s)	213, 318
Fnu4HI	GCNGC	2 cut(s)	42, 144
Fsp4HI	GCNGC	2 cut(s)	42, 144
FspBI	CTAG	3 cut(s)	47, 377, 462
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	42, 144
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	119, 391
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	3 cut(s)	62, 422, 455
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	293, 452
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	2 cut(s)	31, 118
HpyCH4III	ACNGT	2 cut(s)	37, 315
HpyCH4V	TGCA	2 cut(s)	44, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 152
HpyF3I	CTNAG	1 cut(s)	102
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	206, 265
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	5 cut(s)	137, 173, 231, 366, 437
Lsp1109I	GCAGC	1 cut(s)	28
MaeI	CTAG	3 cut(s)	47, 377, 462
MaeIII	GTNAC	2 cut(s)	109, 416
MalI	GATC	2 cut(s)	208, 267
MboI	GATC	2 cut(s)	206, 265
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	2 cut(s)	206, 265
MluCI	AATT	2 cut(s)	169, 332
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	4 cut(s)	97, 247, 281, 352
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	397
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 152
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	2 cut(s)	206, 265
NmuCI	GTSAC	2 cut(s)	109, 416
PaeR7I	CTCGAG	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	62, 455
PkrI	GCNGC	2 cut(s)	43, 145
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PspPI	GGNCC	2 cut(s)	157, 300
PspXI	VCTCGAGB	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	206, 265
RseI	CAYNNNNRTG	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	2 cut(s)	42, 144
Sau3AI	GATC	2 cut(s)	206, 265
Sau96I	GGNCC	2 cut(s)	157, 300
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	6 cut(s)	43, 78, 108, 291, 312, 382
SfcI	CTRYAG	2 cut(s)	33, 311
Sfr274I	CTCGAG	1 cut(s)	356
SinI	GGWCC	2 cut(s)	157, 300
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	293, 356
SmoI	CTYRAG	2 cut(s)	293, 356
Sse9I	AATT	2 cut(s)	169, 332
SsiI	CCGC	4 cut(s)	93, 143, 155, 274
SspMI	CTAG	3 cut(s)	47, 377, 462
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	37, 315
TaqI	TCGA	3 cut(s)	70, 248, 357
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	2 cut(s)	169, 332
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	62, 455
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	2 cut(s)	109, 416
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	2 cut(s)	109, 416
TspDTI	ATGAA	2 cut(s)	333, 435
VpaK11BI	GGWCC	2 cut(s)	157, 300
XapI	RAATTY	2 cut(s)	169, 332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	356
XspI	CTAG	3 cut(s)	47, 377, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.