Rmu_sc0002316.1_g000024

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002316.1
Physical Location & Seq
Reverse (-)
122297 .. 125702
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002316.1_g000024.1.cds

Sequence Viewer

Length: 1515 bp
atgcgtaggcattttgacaaggtcaagccttcaagcaccctcatgaacgtccgcagtcttgatcctgaaaaggatccttttcgtcgaaaggatgatgacgaagacgtgctagaggcagaagtgacttacttaattggtgtagaagatatctttcagtacttgagatgtactattgatatgggtttgttctatccatataaagagatgatggattcagaccaatcacacaccaggaacgccgccaacactggcctgcgtcctctatccccatcccaaaacgacatgtattttggaaggtctacagaacagatcttagtcgctatatcttcgaacaatgtagatattattgctcttcacgaagtgattcgtgaatcaaccgttcggatcaatccacgagttaggcaagtttttctgcaagtgaagtcggaaggcatataccagttctctgatttgcggagggctgctgttggaggagcatttggacccgtgtttgatgtctttagggaagtggtggagaagactttcgagtttgatcccaccctcaaaagcgtcaaatccacactggactctttagagttattgatcctgcagatagaaggtcataacaacgcgttgggtggtaaccgagaaggggaagtagaaaagctcaaagaaacaatggagaaggggaaaaagctgattgaagagctgctggaggttaatgagtggagctgcttgaaggctcattacaccgaccaacttgttgggttggatgagtctctcaagagacacttggagatattgcaggtgcagggagcgattgatgtgaaggaggccttggttgtggccaaggatactaagaaggatgtgaaggagggcttggctttgacaaaggaacatactcggttcctgaagggtatctcggtcatggcggaggaaaacaccaaccaactcgtcagattccaagccgctcttaaagcaggactgtcggatctacagaaggggcaggatgcaatgatcgatacaatgatgtatacaatgaaacgttatcgaatggaagacaaagtggggtctttgatagaagccgctgctctaggagctacactagaagaattgtatgatgtggtttcaaatgatgcgtttgaagagttcgttattggctttggagtaatacgtggacggatacgtgcagggacaagtaatatatttgaattgatcgaaaggaagagggcagaaaacaaagagatgtcgtatattccgactgagcaactaaagaatttcagggtgcagatagaagagggggtaaagcttgtccggaactgcaccaaggttcttgagtggaccgacgacctaaagttcgagtacaccaacaaattccttcatttggagaaaactctcgagagactctacaaccgtttaaatggaatacacccgtttaaatggaatactggaaaatgcggcagctcatgtggaacagcgtccatgagggattctgatatcattaacgatcgattcagtcattcagatcatgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

504

Amino Acids

57.63

Weight (kDa)

5.59

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 775
Acc36I ACCTGC 1 cut(s) 775
AccBSI CCGCTC 1 cut(s) 950
AccI GTMKAC 2 cut(s) 299, 1013
AccII CGCG 1 cut(s) 611
AccIII TCCGGA 1 cut(s) 1293
AciI CCGC 7 cut(s) 52, 240, 454, 911, 948, 1065, 1437
AclI AACGTT 1 cut(s) 1024
AclWI GGATC 7 cut(s) 56, 68, 81, 392, 527, 577, 978
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 2 cut(s) 1255, 1352
AcuI CTGAAG 1 cut(s) 911
AdeI CACNNNGTG 1 cut(s) 361
AfaI GTAC 3 cut(s) 158, 169, 1343
AfiI CCNNNNNNNGG 2 cut(s) 631, 1363
AflIII ACRYGT 2 cut(s) 282, 609
AgsI TTSAA 6 cut(s) 33, 683, 718, 1110, 1124, 1190
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 4 cut(s) 800, 832, 842, 874
AluBI AGCT 7 cut(s) 646, 676, 688, 711, 1079, 1288, 1443
AluI AGCT 7 cut(s) 646, 676, 688, 711, 1079, 1288, 1443
Alw26I GTCTC 3 cut(s) 760, 762, 1375
AlwI GGATC 7 cut(s) 56, 68, 81, 392, 527, 577, 978
Ama87I CYCGRG 1 cut(s) 1376
Aor13HI TCCGGA 1 cut(s) 1293
AoxI GGCC 3 cut(s) 250, 813, 825
ApeKI GCWGC 5 cut(s) 461, 688, 711, 1067, 1440
ApoI RAATTY 2 cut(s) 1255, 1352
ArsI GACNNNNNNTTYG 4 cut(s) 272, 304, 1319, 1351
Asp700I GAANNNNTTC 2 cut(s) 363, 521
AspS9I GGNCC 2 cut(s) 482, 1320
AsuII TTCGAA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 1376
AvaII GGWCC 2 cut(s) 482, 1320
BalI TGGCCA 1 cut(s) 827
BamHI GGATCC 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 710, 742
BauI CACGAG 1 cut(s) 393
BbsI GAAGAC 3 cut(s) 108, 524, 1044
BbvI GCAGC 5 cut(s) 448, 675, 698, 1054, 1452
BccI CCATC 2 cut(s) 202, 277
BcgI CGANNNNNNTGC 2 cut(s) 948, 982
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 2 cut(s) 826, 1155
BcoDI GTCTC 3 cut(s) 760, 762, 1375
BfaI CTAG 3 cut(s) 110, 1073, 1085
BfmI CTRYAG 3 cut(s) 300, 587, 974
BfuAI ACCTGC 1 cut(s) 775
BfuI GTATCC 2 cut(s) 826, 1155
BglII AGATCT 1 cut(s) 309
BisI GCNGC 9 cut(s) 240, 462, 689, 712, 948, 1065, 1068, 1438, 1441
BlsI GCNGC 9 cut(s) 241, 463, 690, 713, 949, 1066, 1069, 1439, 1442
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 2 cut(s) 482, 1320
BmeT110I CYCGRG 1 cut(s) 1376
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 482, 1320
BmiI GGNNCC 3 cut(s) 75, 484, 887
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 2 cut(s) 979, 1105
BpiI GAAGAC 3 cut(s) 108, 524, 1044
BpmI CTGGAG 1 cut(s) 713
Bpu14I TTCGAA 1 cut(s) 329
BpuEI CTTGAG 3 cut(s) 181, 746, 1334
Bsa29I ATCGAT 2 cut(s) 999, 1489
BsaAI YACGTR 2 cut(s) 1154, 1166
BsaJI CCNNGG 3 cut(s) 816, 828, 1305
BsaWI WCCGGW 1 cut(s) 1293
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 1363
Bse1I ACTGG 4 cut(s) 253, 439, 567, 1432
Bse3DI GCAATG 1 cut(s) 999
BseAI TCCGGA 1 cut(s) 1293
BseBI CCWGG 1 cut(s) 232
BseCI ATCGAT 2 cut(s) 999, 1489
BseDI CCNNGG 3 cut(s) 816, 828, 1305
BseGI GGATG 5 cut(s) 97, 269, 757, 850, 994
BseLI CCNNNNNNNGG 2 cut(s) 631, 1363
BseMI GCAATG 1 cut(s) 999
BseMII CTCAG 1 cut(s) 1233
BseNI ACTGG 4 cut(s) 253, 439, 567, 1432
BseRI GAGGAG 1 cut(s) 486
BseXI GCAGC 5 cut(s) 448, 675, 698, 1054, 1452
BsgI GTGCAG 4 cut(s) 809, 1188, 1285, 1286
Bsh1236I CGCG 1 cut(s) 611
Bsh1285I CGRYCG 1 cut(s) 1489
BshFI GGCC 3 cut(s) 252, 815, 827
BshVI ATCGAT 2 cut(s) 999, 1489
BsiEI CGRYCG 1 cut(s) 1489
BsiHKCI CYCGRG 1 cut(s) 1376
BsiSI CCGG 1 cut(s) 1294
BslFI GGGAC 1 cut(s) 1186
BslI CCNNNNNNNGG 2 cut(s) 631, 1363
BsmAI GTCTC 3 cut(s) 760, 762, 1375
BsmFI GGGAC 1 cut(s) 1186
BsnI GGCC 3 cut(s) 252, 815, 827
BsoBI CYCGRG 1 cut(s) 1376
Bsp119I TTCGAA 1 cut(s) 329
Bsp13I TCCGGA 1 cut(s) 1293
BspACI CCGC 7 cut(s) 52, 240, 454, 911, 948, 1065, 1437
BspANI GGCC 3 cut(s) 252, 815, 827
BspCNI CTCAG 1 cut(s) 1234
BspDI ATCGAT 2 cut(s) 999, 1489
BspEI TCCGGA 1 cut(s) 1293
BspFNI CGCG 1 cut(s) 611
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 75, 484, 887
BspMAI CTGCAG 1 cut(s) 591
BspMI ACCTGC 1 cut(s) 775
BspPI GGATC 7 cut(s) 56, 68, 81, 392, 527, 577, 978
BspQI GCTCTTC 2 cut(s) 357, 678
BspT104I TTCGAA 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 950
BsrDI GCAATG 1 cut(s) 999
BsrI ACTGG 4 cut(s) 253, 439, 567, 1432
BssECI CCNNGG 3 cut(s) 816, 828, 1305
BssNAI GTATAC 1 cut(s) 1014
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 3 cut(s) 816, 828, 1305
Bst1107I GTATAC 1 cut(s) 1014
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 379, 966, 1394
Bst6I CTCTTC 5 cut(s) 357, 678, 1119, 1199, 1269
BstBAI YACGTR 2 cut(s) 1154, 1166
BstBI TTCGAA 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 313, 837, 1242
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 5 cut(s) 97, 269, 757, 850, 994
BstFNI CGCG 1 cut(s) 611
BstMAI GTCTC 3 cut(s) 760, 762, 1375
BstMCI CGRYCG 1 cut(s) 1489
BstMWI GCNNNNNNNGC 2 cut(s) 956, 1076
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 286
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 3 cut(s) 300, 587, 974
BstUI CGCG 1 cut(s) 611
BstV1I GCAGC 5 cut(s) 448, 675, 698, 1054, 1452
BstV2I GAAGAC 3 cut(s) 108, 524, 1044
BstX2I RGATCY 3 cut(s) 73, 309, 970
BstXI CCANNNNNNTGG 1 cut(s) 743
BstYI RGATCY 3 cut(s) 73, 309, 970
BstZ17I GTATAC 1 cut(s) 1014
Bsu15I ATCGAT 2 cut(s) 999, 1489
BsuI GTATCC 2 cut(s) 826, 1155
BsuRI GGCC 3 cut(s) 252, 815, 827
BsuTUI ATCGAT 2 cut(s) 999, 1489
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 5 cut(s) 97, 269, 757, 850, 994
BtsIMutI CAGTG 2 cut(s) 246, 560
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 482, 1320
ClaI ATCGAT 2 cut(s) 999, 1489
CseI GACGC 3 cut(s) 245, 538, 1446
Csp6I GTAC 3 cut(s) 157, 168, 1342
CviAII CATG 6 cut(s) 43, 283, 907, 1446, 1462, 1508
CviQI GTAC 3 cut(s) 157, 168, 1342
DdeI CTNAG 3 cut(s) 313, 837, 1242
DraI TTTAAA 2 cut(s) 1398, 1417
DraIII CACNNNGTG 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 825
Eam1104I CTCTTC 5 cut(s) 357, 678, 1119, 1199, 1269
EarI CTCTTC 5 cut(s) 357, 678, 1119, 1199, 1269
EciI GGCGGA 1 cut(s) 926
Eco130I CCWWGG 3 cut(s) 816, 828, 1305
Eco147I AGGCCT 1 cut(s) 815
Eco32I GATATC 2 cut(s) 148, 1477
Eco47I GGWCC 2 cut(s) 482, 1320
Eco57I CTGAAG 1 cut(s) 911
Eco88I CYCGRG 1 cut(s) 1376
Eco91I GGTNACC 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 230
EcoRV GATATC 2 cut(s) 148, 1477
EcoT14I CCWWGG 3 cut(s) 816, 828, 1305
ErhI CCWWGG 3 cut(s) 816, 828, 1305
FaeI CATG 6 cut(s) 46, 286, 910, 1449, 1465, 1511
FalI AAGNNNNNCTT 8 cut(s) 755, 787, 800, 832, 842, 874, 936, 968
FaqI GGGAC 1 cut(s) 1186
FatI CATG 6 cut(s) 42, 282, 906, 1445, 1461, 1507
FblI GTMKAC 2 cut(s) 299, 1013
Fnu4HI GCNGC 9 cut(s) 240, 462, 689, 712, 948, 1065, 1068, 1438, 1441
FokI GGATG 5 cut(s) 104, 256, 764, 857, 1001
Fsp4HI GCNGC 9 cut(s) 240, 462, 689, 712, 948, 1065, 1068, 1438, 1441
FspBI CTAG 3 cut(s) 110, 1073, 1085
GluI GCNGC 9 cut(s) 240, 462, 689, 712, 948, 1065, 1068, 1438, 1441
GsuI CTGGAG 1 cut(s) 713
HaeIII GGCC 3 cut(s) 252, 815, 827
HapII CCGG 1 cut(s) 1294
HgaI GACGC 3 cut(s) 245, 538, 1446
Hin1II CATG 6 cut(s) 46, 286, 910, 1449, 1465, 1511
HindIII AAGCTT 1 cut(s) 1286
HinfI GANTC 9 cut(s) 212, 364, 371, 566, 755, 939, 1383, 1469, 1491
HpaII CCGG 1 cut(s) 1294
Hpy166II GTNNAC 5 cut(s) 300, 1014, 1157, 1320, 1344
Hpy188I TCNGA 9 cut(s) 217, 384, 427, 448, 938, 970, 1239, 1474, 1504
Hpy8I GTNNAC 5 cut(s) 300, 1014, 1157, 1320, 1344
Hpy99I CGWCG 2 cut(s) 87, 1328
HpyCH4III ACNGT 3 cut(s) 379, 966, 1394
HpyCH4IV ACGT 5 cut(s) 48, 105, 1024, 1153, 1165
HpyCH4V TGCA 8 cut(s) 415, 589, 784, 790, 992, 1169, 1267, 1302
HpyF10VI GCNNNNNNNGC 2 cut(s) 956, 1076
HpyF3I CTNAG 3 cut(s) 313, 837, 1242
HpySE526I ACGT 5 cut(s) 48, 105, 1024, 1153, 1165
Hsp92II CATG 6 cut(s) 46, 286, 910, 1449, 1465, 1511
Kpn2I TCCGGA 1 cut(s) 1293
LguI GCTCTTC 2 cut(s) 357, 678
LmnI GCTCC 4 cut(s) 473, 708, 794, 1076
Lsp1109I GCAGC 5 cut(s) 448, 675, 698, 1054, 1452
LweI GCATC 2 cut(s) 979, 1105
MaeI CTAG 3 cut(s) 110, 1073, 1085
MaeII ACGT 5 cut(s) 48, 105, 1024, 1153, 1165
MaeIII GTNAC 2 cut(s) 121, 620
MbiI CCGCTC 1 cut(s) 950
MflI RGATCY 3 cut(s) 73, 309, 970
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 5 cut(s) 132, 1091, 1190, 1255, 1352
MluI ACGCGT 1 cut(s) 609
MluNI TGGCCA 1 cut(s) 827
MlyI GAGTC 3 cut(s) 560, 764, 1377
MmeI TCCRAC 5 cut(s) 405, 448, 729, 948, 1262
Mox20I TGGCCA 1 cut(s) 827
MroI TCCGGA 1 cut(s) 1293
MroXI GAANNNNTTC 2 cut(s) 363, 521
MscI TGGCCA 1 cut(s) 827
MseI TTAA 6 cut(s) 131, 699, 954, 1397, 1416, 1482
MslI CAYNNNNRTG 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 827
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 1 cut(s) 1294
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 1 cut(s) 611
MwoI GCNNNNNNNGC 2 cut(s) 956, 1076
NlaIII CATG 6 cut(s) 46, 286, 910, 1449, 1465, 1511
NlaIV GGNNCC 3 cut(s) 75, 484, 887
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 286
NspV TTCGAA 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 1376
PagI TCATGA 1 cut(s) 42
PaqCI CACCTGC 1 cut(s) 775
PceI AGGCCT 1 cut(s) 815
PciI ACATGT 1 cut(s) 282
PciSI GCTCTTC 2 cut(s) 357, 678
PcsI WCGNNNNNNNCGW 1 cut(s) 1235
PdmI GAANNNNTTC 2 cut(s) 363, 521
PfeI GAWTC 6 cut(s) 212, 364, 371, 939, 1469, 1491
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 9 cut(s) 241, 463, 690, 713, 949, 1066, 1069, 1439, 1442
Ple19I CGATCG 1 cut(s) 1489
PleI GAGTC 3 cut(s) 560, 763, 1377
PpsI GAGTC 3 cut(s) 560, 763, 1377
Ppu21I YACGTR 2 cut(s) 1154, 1166
PscI ACATGT 1 cut(s) 282
Psp1406I AACGTT 1 cut(s) 1024
Psp6I CCWGG 1 cut(s) 230
PspEI GGTNACC 1 cut(s) 620
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 3 cut(s) 75, 484, 887
PspPI GGNCC 2 cut(s) 482, 1320
PstI CTGCAG 1 cut(s) 591
PsuI RGATCY 3 cut(s) 73, 309, 970
PsyI GACNNNGTC 1 cut(s) 20
PvuI CGATCG 1 cut(s) 1489
RsaI GTAC 3 cut(s) 158, 169, 1343
RsaNI GTAC 3 cut(s) 157, 168, 1342
RseI CAYNNNNRTG 1 cut(s) 41
SapI GCTCTTC 2 cut(s) 357, 678
SaqAI TTAA 6 cut(s) 131, 699, 954, 1397, 1416, 1482
SatI GCNGC 9 cut(s) 240, 462, 689, 712, 948, 1065, 1068, 1438, 1441
Sau96I GGNCC 2 cut(s) 482, 1320
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 3 cut(s) 560, 764, 1377
ScrFI CCNGG 1 cut(s) 232
SfaNI GCATC 2 cut(s) 979, 1105
SfcI CTRYAG 3 cut(s) 300, 587, 974
Sfr274I CTCGAG 1 cut(s) 1376
SfuI TTCGAA 1 cut(s) 329
SinI GGWCC 2 cut(s) 482, 1320
SlaI CTCGAG 1 cut(s) 1376
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 4 cut(s) 160, 761, 1313, 1376
SmoI CTYRAG 4 cut(s) 160, 761, 1313, 1376
Sse9I AATT 5 cut(s) 132, 1091, 1190, 1255, 1352
SseBI AGGCCT 1 cut(s) 815
SsiI CCGC 7 cut(s) 52, 240, 454, 911, 948, 1065, 1437
SspMI CTAG 3 cut(s) 110, 1073, 1085
StuI AGGCCT 1 cut(s) 815
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 3 cut(s) 816, 828, 1305
TaaI ACNGT 3 cut(s) 379, 966, 1394
TaiI ACGT 5 cut(s) 51, 108, 1027, 1156, 1168
TaqI TCGA 9 cut(s) 85, 329, 525, 999, 1030, 1197, 1338, 1377, 1489
TaqII GACCGA 2 cut(s) 892, 1337
TasI AATT 5 cut(s) 132, 1091, 1190, 1255, 1352
TatI WGTACW 3 cut(s) 156, 167, 1341
TauI GCSGC 4 cut(s) 242, 950, 1067, 1440
TfiI GAWTC 6 cut(s) 212, 364, 371, 939, 1469, 1491
Tru1I TTAA 6 cut(s) 131, 699, 954, 1397, 1416, 1482
Tru9I TTAA 6 cut(s) 131, 699, 954, 1397, 1416, 1482
TscAI CASTG 2 cut(s) 253, 567
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 5 cut(s) 461, 688, 711, 1067, 1440
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 59, 1034, 1349
TspGWI ACGGA 1 cut(s) 1174
TspRI CASTG 2 cut(s) 253, 567
Tth111I GACNNNGTC 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 482, 1320
XapI RAATTY 2 cut(s) 1255, 1352
XceI RCATGY 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 1376
XmiI GTMKAC 2 cut(s) 299, 1013
XmnI GAANNNNTTC 2 cut(s) 363, 521
XspI CTAG 3 cut(s) 110, 1073, 1085
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.