Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8222306.1

Orthogroup ID

OG0003113

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 742

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8222306.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 688 bp

gtacaatatcctctaacttttccttgcttacatcgttgacagatttgagactcaatgataatttcttgactgggactatacctgtggagcttacgaaacttccaaaccttaagaatgtagatttctcaaacaataggctctatggtaaagtacctgtgtttcgagatggtgtggttgtgaaattagagggaaaccctgatataggtaaggaccagcctagcacgcctagcacacctccgggtccggttccggctcctaatggtggaggtgacaagaaatcccagactggtgtgattattggggttgttgtcggatgtattgttggattggttctagttggggttctcgtcttttgtatgctgaagaaaaaacagaggcgttctggtaaagtgcaaagtccaaattcgttggttatacaccctcgtcattctggtgatcaaaatgctgtcaaaatttcagttgctaataggttaaatagcactggaaatgagtcttacaatagtcccccaaataatggacctaatgacatccaggttgaggctggaaatatgatcatttctatccaagttttgaggagtgtgaccaataacttcaatgaagataagatattgggaaaaggtgggtttggaactgtgtatggaggagaattgcatgatggaacaaaaattgcagtgaagagaatggaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

229

Amino Acids

24.37

Weight (kDa)

9.49

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01820
fragaria_vesca	FvH4_4g33170 FvH4_4g33170 FvH4_4g33171
malus_domestica	MD13G1017200.v1.1 MD16G1015000.v1.1 MD16G1015200.v1.1
prunus_persica	Prupe.1G336300_v2.0.a1 Prupe.1G336300_v2.0.a1
pyrus_communis	pycom13g01480 pycom16g01400
rosa_chinensis	RchiOBHm_Chr4g0442211 RchiOBHm_Chr4g0442221 RchiOBHm_Chr4g0442231
rosa_laevigata	RLG00000006022 RLG00000006023
rosa_multiflora	Rmu_co8222306.1_g000001 Rmu_sc0000124.1_g000060 Rmu_sc0000124.1_g000062 Rmu_sc0010284.1_g000002 Rmu_sc0010284.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383140 Rroxscaffold_5G00383150
rosa_rugosa	Rorug04G0339700 Rorug04G0339800 Rorug04G0339900
rosa_samantha	Rh4AG391300 Rh4AG391400 Rh4BG405000 Rh4BG405100 Rh4CG420100 Rh4CG420200 Rh4DG398100 Rh4DG398200 Rh4DG398300
rosa_wichuraiana	Rw4G033820 Rw4G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	402, 452
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	2 cut(s)	3, 152
AfiI	CCNNNNNNNGG	4 cut(s)	202, 262, 514, 537
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	594
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	42
ApoI	RAATTY	2 cut(s)	402, 452
AspS9I	GGNCC	3 cut(s)	210, 241, 517
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	280, 445
AvaII	GGWCC	3 cut(s)	210, 241, 517
BccI	CCATC	2 cut(s)	160, 649
BciT130I	CCWGG	1 cut(s)	532
BclI	TGATCA	2 cut(s)	435, 551
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	3 cut(s)	218, 227, 334
BfrI	CTTAAG	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	239, 532
Bme18I	GGWCC	3 cut(s)	210, 241, 517
BmgT120I	GGNCC	3 cut(s)	210, 241, 517
BmiI	GGNNCC	3 cut(s)	242, 248, 254
BmrFI	CCNGG	2 cut(s)	239, 532
BmrI	ACTGGG	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 262, 514, 537
Bse1I	ACTGG	3 cut(s)	75, 291, 486
BseBI	CCWGG	1 cut(s)	532
BseGI	GGATG	2 cut(s)	319, 527
BseLI	CCNNNNNNNGG	4 cut(s)	202, 262, 514, 537
BseNI	ACTGG	3 cut(s)	75, 291, 486
BseRI	GAGGAG	2 cut(s)	588, 656
BsiSI	CCGG	3 cut(s)	238, 244, 250
BslFI	GGGAC	2 cut(s)	87, 488
BslI	CCNNNNNNNGG	4 cut(s)	202, 262, 514, 537
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	2 cut(s)	87, 488
Bsp143I	GATC	2 cut(s)	435, 551
BspLI	GGNNCC	3 cut(s)	242, 248, 254
BspTI	CTTAAG	1 cut(s)	109
BsrI	ACTGG	3 cut(s)	75, 291, 486
BssMI	GATC	2 cut(s)	435, 551
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	1 cut(s)	633
Bst6I	CTCTTC	1 cut(s)	670
BstAFI	CTTAAG	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	319, 527
BstKTI	GATC	2 cut(s)	438, 554
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	435, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 227
BstNI	CCWGG	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	237, 530
BtsCI	GGATG	2 cut(s)	319, 527
BtsI	GCAGTG	1 cut(s)	677
BtsIMutI	CAGTG	2 cut(s)	479, 677
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	3 cut(s)	210, 241, 517
Csp6I	GTAC	2 cut(s)	2, 151
CviAII	CATG	1 cut(s)	652
CviJI	RGCY	5 cut(s)	90, 138, 216, 253, 541
CviKI_1	RGCY	5 cut(s)	90, 138, 216, 253, 541
CviQI	GTAC	2 cut(s)	2, 151
DpnI	GATC	2 cut(s)	437, 553
DpnII	GATC	2 cut(s)	435, 551
Eam1104I	CTCTTC	1 cut(s)	670
EarI	CTCTTC	1 cut(s)	670
Eco47I	GGWCC	3 cut(s)	210, 241, 517
Eco57I	CTGAAG	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	530
FaeI	CATG	1 cut(s)	655
FaiI	YATR	8 cut(s)	79, 143, 202, 358, 415, 550, 638, 653
FaqI	GGGAC	2 cut(s)	87, 488
FatI	CATG	1 cut(s)	651
FbaI	TGATCA	2 cut(s)	435, 551
FokI	GGATG	2 cut(s)	326, 514
FspBI	CTAG	3 cut(s)	218, 227, 334
HapII	CCGG	3 cut(s)	238, 244, 250
Hin1II	CATG	1 cut(s)	655
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	3 cut(s)	50, 490, 685
HpaII	CCGG	3 cut(s)	238, 244, 250
HphI	GGTGA	2 cut(s)	280, 445
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	66, 163
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	633
HpyCH4V	TGCA	3 cut(s)	393, 651, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 227
Hsp92II	CATG	1 cut(s)	655
Ksp22I	TGATCA	2 cut(s)	435, 551
Kzo9I	GATC	2 cut(s)	435, 551
LmnI	GCTCC	2 cut(s)	87, 258
MaeI	CTAG	3 cut(s)	218, 227, 334
MaeIII	GTNAC	2 cut(s)	268, 579
MalI	GATC	2 cut(s)	437, 553
MboI	GATC	2 cut(s)	435, 551
MboII	GAAGA	3 cut(s)	375, 610, 687
MluCI	AATT	6 cut(s)	60, 181, 402, 452, 646, 665
MlyI	GAGTC	2 cut(s)	44, 499
MmeI	TCCRAC	2 cut(s)	291, 303
MnlI	CCTC	9 cut(s)	21, 180, 245, 259, 368, 431, 531, 566, 634
MseI	TTAA	2 cut(s)	110, 472
MslI	CAYNNNNRTG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	109
MspI	CCGG	3 cut(s)	238, 244, 250
MspR9I	CCNGG	2 cut(s)	239, 532
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	222, 227
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	435, 551
NlaIII	CATG	1 cut(s)	655
NlaIV	GGNNCC	3 cut(s)	242, 248, 254
NmuCI	GTSAC	2 cut(s)	268, 579
PfeI	GAWTC	1 cut(s)	685
PflMI	CCANNNNNTGG	1 cut(s)	514
PleI	GAGTC	2 cut(s)	44, 498
PpsI	GAGTC	2 cut(s)	44, 498
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	3 cut(s)	242, 248, 254
PspPI	GGNCC	3 cut(s)	210, 241, 517
RsaI	GTAC	2 cut(s)	3, 152
RsaNI	GTAC	2 cut(s)	2, 151
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	110, 472
Sau3AI	GATC	2 cut(s)	435, 551
Sau96I	GGNCC	3 cut(s)	210, 241, 517
SchI	GAGTC	2 cut(s)	44, 499
ScrFI	CCNGG	2 cut(s)	239, 532
SinI	GGWCC	3 cut(s)	210, 241, 517
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	6 cut(s)	60, 181, 402, 452, 646, 665
SspMI	CTAG	3 cut(s)	218, 227, 334
StyD4I	CCNGG	2 cut(s)	237, 530
TaaI	ACNGT	1 cut(s)	633
TaqI	TCGA	1 cut(s)	162
TasI	AATT	6 cut(s)	60, 181, 402, 452, 646, 665
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	2 cut(s)	110, 472
Tru9I	TTAA	2 cut(s)	110, 472
TscAI	CASTG	2 cut(s)	486, 677
TseFI	GTSAC	2 cut(s)	268, 579
Tsp45I	GTSAC	2 cut(s)	268, 579
TspDTI	ATGAA	1 cut(s)	611
TspRI	CASTG	2 cut(s)	486, 677
Van91I	CCANNNNNTGG	1 cut(s)	514
Vha464I	CTTAAG	1 cut(s)	109
VpaK11BI	GGWCC	3 cut(s)	210, 241, 517
XagI	CCTNNNNNAGG	1 cut(s)	200
XapI	RAATTY	2 cut(s)	402, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XspI	CTAG	3 cut(s)	218, 227, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.