Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003113

Physical Location & Seq

Genomic Coordinates Forward (+)

69777458 .. 69781964

Gene Structure 4507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG391300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2796 bp

ATGGGTTTCCGGGGTTGTGTTATGTTCCTGTTCCTGTTCCTGTCACTGTGTGCGCCTGTGCAGTCACAGAGCGAGGACCAGCCAGCCATGGAAGATATCCTGAAAAGCTTGACATCCAAACTACCCAACAAGTGGAAGGCCGGCACCGATTGCTGCACCTGGGCCGGAGTCTCGTGCGACAATAGCAACAAGGTAACCGGCCTCGTAATCAAGGAGTTAAATCTGACGGGTAAGCTCAGTCCGGCGGTTCGAAACCTCACGTCGTTGCAGAGTCTGCAACTCATGCGGAACAGCCTCACCGGAGACTTCCCGAGTCTCAAAGGCCTCGGTTCGCTTCAGAAGGTTTACGCTAACGAGAACGGTTTCACTTCTTTTCCGGCGGGTGATTTCTTCTCCGGCCTTTCCTCCCTTCAGGAAATCTTCATCGGTCAGAATCCCTTCTCCCCGTGGCAGATTCCGGAGAGTATCAAAGAGGCCTCGAGTCTGACGACATTTTTAGCTGGTGGAGCCAACATTACAGGTAAAATCCCGGATTACTTTAACTCCACCTATATGCCGAGTTTGACAGACTTGGATTTGGATTCGAATCAGCTGCAAGGCGGGTTGCCTTCGAGTTTCGCGGGTTCGAATATTAACAAACTTAGGTTGGAGAACAATGGGAATCTTAATGGCACTCTTGATGTGTTACAGAACATGACCGAGCTGAATGAAGTTCATTTAAATGGGAATAAGTTCACAGGTCCTTTGCCAGATTTTTCGAATATCAAGAACTTAATATTCTTTGACGTGAGGGATAATCAGCTCACTGGTGTCATTCCTTCTTCATTGGTGAATCAACCCTCCCTAGCTAATGTTACGTTGAGCAACAATTTGTTTCAGGGCCCCAAGCCCAAGTTCAAGAGTGGTGTTGGGTTGGATATGGATGTAGGGAATATGTTTTGCAATCCTAATGTCGGTCAGGATTGCGATCCCCGTGTTGATATATTGCTTTCGATTGCCAGAGACATGGGTTACCCTACTACGTTTGCACAAAATTGGAGGGGGAATGATCCTTGTGATGCCAACGATGGTTCTTGGCTTGGCTTGACATGTTCAGGAGGGAACATTACCAGAATCAGCTTTGGTAAAAGGGGGCTGGCAGGTACAATATCCTCTAACTTTTCCTTGCTTACATCGTTGACAGATTTGAGACTCAATGATAATTTCTTGACTGGGACTATACCTGTGGAGCTTACGAAACTTCCAAACCTTAAGAATGTAGATTTCTCAAACAATAGGCTCTATGGTAAAGTACCTGTGTTTCGAGATGGTGTGGTTGTGAAATTAGAGGGAAACCCTGATATAGGTAAGGACCAGCCTAGCACGCCTAGCGCACCTCCGGTTCCGGCTCCTAATGGTGGAGGTGACAAGAAATCCCAGACTGGTGTGATTATTGGGGTTGTTGTCGGATGTATTGTTGGATTGGTTCTAGTTGGGGTTCTCGTCTTTTGTATGCTGAAGAAAAAACAGAGGCGTTCTGGTAAAGTGCAAAGTCCAAATTCGTTGGTTATACACCCTCGTCATTCTGGTGATCAAAATGCTGTCAAAATTTCAGTTGCTAATAGGTTAAATAGCACTGGAAATGAGTCTTACAATAGTCCCCCAAATAATGGACCTAATAACATCCAGGTTGAGGCTGGAAATATGATCATTTCTATCCAAGTTTTGAGGAGTGTGACCAATAACTTCAATGAAGATAAGATATTGGGAAAAGGTGGGTTTGGAACTGTGTATGGAGGAGAATTGCATGATGGAACGAAAATTGCAGTGAAGAGAATGGAATCTGGTGTGGTAGCTGAGAAAGGCCTGCATGAGTTCAAGTCTGAGATTGCAGTTCTTACTAAGGTCCGACATCGTCACTTAGTGGGACTTCTTGGATATTGTTTGGATGGGAATGAGAGGCTTCTTGTCTATGAGCACATGCCGCAGGGGACTCTTAGTAGACATTTGTTCAACTGGAAAGAAGAAGGGCTGGAGCCACTTGAATGGACTAGAAGACTGACCATTGCCTTGGATGTTGCGAGAGGGGTTGAATACCTGCACGGTTTGGCCAACGAAATTTTCATTCATAGAGACCTTAAGCCTTCTAATATATTACTTGGAGATGATATGCGGGCGAAAGTGGCGGACTTTGGATTGGTTCGTCTTGCTCCAGCAGGGAAAGCCTCTATAGAGACGAGACTAGCAGGAACTTTTGGCTATTTGGCTCCAGAATATGCAGCAACCGGACGGATGACACTCAAGGTAGATGTGTACAGCTTTGGTGTAATATTAATGGAGTTGATCACCGGTAGAAAGGCAATTGACGAAAGCCAGCCTGAGGAGAGTTGTCACCTAGTGACATGGTTTCGTAGAAAGTTCATTAAAACAGATGCACTCCCTGAGATTGTTGATCCAACCATTGATGTCAATGAGGAAACTCTTTCTAGTATAAGCACGGTGGCTCAGCTTGCCGGTCATTGCAGCGCAAGGGAGCCGTACCAAAGGCCTGACATGGGTCATGCAGTCAATGTTCTTTCATCACTTGTTGAGCAGTGGAAGCCCTCTAAACAAGAAGATTTTGATGACATGGATGCAATCAACTTTGATGTGCCACTCAATGAAGCAGTAAAGAGGTGGCAGGCTGCTGAGGGCAAAAGCAACATCGATGACTCTTCATCTTCATCAATATTTCCCAGCGGGGATACTACCCAGACCAGCATACCTAACCGGCCTTCTGGATTTGCTGAGTCTTTTACATCATCAGATGGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

931

Amino Acids

101.22

Weight (kDa)

5.96

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	576 - 849	7.5e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	579 - 795	1.8e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01820
fragaria_vesca	FvH4_4g33170 FvH4_4g33170 FvH4_4g33171
malus_domestica	MD13G1017200.v1.1 MD16G1015000.v1.1 MD16G1015200.v1.1
prunus_persica	Prupe.1G336300_v2.0.a1 Prupe.1G336300_v2.0.a1
pyrus_communis	pycom13g01480 pycom16g01400
rosa_chinensis	RchiOBHm_Chr4g0442211 RchiOBHm_Chr4g0442221 RchiOBHm_Chr4g0442231
rosa_laevigata	RLG00000006022 RLG00000006023
rosa_multiflora	Rmu_co8222306.1_g000001 Rmu_sc0000124.1_g000060 Rmu_sc0000124.1_g000062 Rmu_sc0010284.1_g000002 Rmu_sc0010284.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383140 Rroxscaffold_5G00383150
rosa_rugosa	Rorug04G0339700 Rorug04G0339800 Rorug04G0339900
rosa_samantha	Rh4AG391300 Rh4AG391400 Rh4BG405000 Rh4BG405100 Rh4CG420100 Rh4CG420200 Rh4DG398100 Rh4DG398200 Rh4DG398300
rosa_wichuraiana	Rw4G033820 Rw4G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1130, 2085
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	2 cut(s)	132, 1649
AccI	GTMKAC	1 cut(s)	1981
AccII	CGCG	1 cut(s)	620
AccIII	TCCGGA	1 cut(s)	457
AclWI	GGATC	3 cut(s)	962, 1043, 2426
AcoI	YGGCCR	1 cut(s)	2088
AcsI	RAATTY	3 cut(s)	1537, 1587, 2097
AcuI	CTGAAG	3 cut(s)	320, 395, 1517
AdeI	CACNNNGTG	3 cut(s)	50, 1903, 2377
AfaI	GTAC	4 cut(s)	1144, 1293, 2294, 2519
AfiI	CCNNNNNNNGG	8 cut(s)	132, 953, 1343, 1397, 1649, 1672, 2359, 2534
AflII	CTTAAG	2 cut(s)	1250, 2117
AflIII	ACRYGT	1 cut(s)	1088
AgeI	ACCGGT	1 cut(s)	2327
AgsI	TTSAA	6 cut(s)	898, 1729, 1858, 1993, 2024, 2072
AjiI	CACGTC	2 cut(s)	261, 787
AjnI	CCWGG	2 cut(s)	158, 1665
AjuI	GAANNNNNNNTTGG	4 cut(s)	878, 910, 2084, 2116
Alw21I	GWGCWC	1 cut(s)	1959
Alw26I	GTCTC	8 cut(s)	175, 297, 320, 996, 1183, 2106, 2207, 2212
AlwI	GGATC	3 cut(s)	962, 1043, 2426
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	2 cut(s)	310, 478
Aor13HI	TCCGGA	1 cut(s)	457
ApaI	GGGCCC	1 cut(s)	884
ApeKI	GCWGC	5 cut(s)	153, 592, 2258, 2502, 2663
ApoI	RAATTY	3 cut(s)	1537, 1587, 2097
AseI	ATTAAT	1 cut(s)	2312
AsiGI	ACCGGT	1 cut(s)	2327
Asp700I	GAANNNNTTC	3 cut(s)	362, 437, 731
AspLEI	GCGC	3 cut(s)	55, 1373, 2507
AspS9I	GGNCC	8 cut(s)	76, 162, 740, 880, 881, 1351, 1652, 1885
AsuC2I	CCSGG	2 cut(s)	11, 530
AsuHPI	GGTGA	7 cut(s)	289, 395, 841, 1415, 1580, 2317, 2363
AsuII	TTCGAA	4 cut(s)	250, 584, 626, 758
AvaI	CYCGRG	2 cut(s)	310, 478
AvaII	GGWCC	5 cut(s)	76, 740, 1351, 1652, 1885
AxyI	CCTNAGG	1 cut(s)	2358
BaeGI	GKGCMC	1 cut(s)	884
BalI	TGGCCA	1 cut(s)	2090
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	884
BauI	CACGAG	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	2041
Bbv12I	GWGCWC	1 cut(s)	1959
BbvCI	CCTCAGC	1 cut(s)	2667
BbvI	GCAGC	5 cut(s)	140, 579, 2270, 2514, 2650
BccI	CCATC	5 cut(s)	1061, 1301, 1784, 1922, 2780
BceAI	ACGGC	1 cut(s)	2500
BcgI	CGANNNNNNTGC	2 cut(s)	574, 608
BciT130I	CCWGG	2 cut(s)	160, 1667
BciVI	GTATCC	1 cut(s)	2716
BclI	TGATCA	3 cut(s)	1570, 1686, 2322
BcnI	CCSGG	2 cut(s)	11, 530
BcoDI	GTCTC	8 cut(s)	175, 297, 320, 996, 1183, 2106, 2207, 2212
BfaI	CTAG	8 cut(s)	845, 1359, 1368, 1469, 2031, 2222, 2375, 2466
BfmI	CTRYAG	1 cut(s)	2208
BfrI	CTTAAG	2 cut(s)	1250, 2117
BfuAI	ACCTGC	2 cut(s)	1130, 2085
BfuI	GTATCC	1 cut(s)	2716
BisI	GCNGC	6 cut(s)	154, 593, 1964, 2259, 2503, 2664
BlpI	GCTNAGC	1 cut(s)	2484
BlsI	GCNGC	6 cut(s)	155, 594, 1965, 2260, 2504, 2665
Bme1390I	CCNGG	4 cut(s)	11, 160, 530, 1667
Bme18I	GGWCC	5 cut(s)	76, 740, 1351, 1652, 1885
BmeT110I	CYCGRG	2 cut(s)	310, 478
BmgBI	CACGTC	2 cut(s)	261, 787
BmgT120I	GGNCC	8 cut(s)	76, 162, 740, 880, 881, 1351, 1652, 1885
BmiI	GGNNCC	9 cut(s)	145, 508, 882, 883, 1383, 1389, 2016, 2247, 2514
BmrFI	CCNGG	4 cut(s)	11, 160, 530, 1667
BmrI	ACTGGG	1 cut(s)	1221
BmsI	GCATC	3 cut(s)	1048, 2401, 2602
BmuI	ACTGGG	1 cut(s)	1221
BoxI	GACNNNNGTC	1 cut(s)	2535
BpiI	GAAGAC	1 cut(s)	2041
BpmI	CTGGAG	3 cut(s)	2033, 2175, 2232
Bpu10I	CCTNAGC	1 cut(s)	2667
Bpu1102I	GCTNAGC	1 cut(s)	2484
Bpu14I	TTCGAA	4 cut(s)	250, 584, 626, 758
BpuEI	CTTGAG	1 cut(s)	2264
BpuMI	CCSGG	2 cut(s)	11, 530
Bsa29I	ATCGAT	1 cut(s)	2685
BsaBI	GATNNNNATC	2 cut(s)	585, 966
BsaI	GGTCTC	1 cut(s)	2106
BsaJI	CCNNGG	6 cut(s)	10, 87, 159, 325, 446, 2049
BsaWI	WCCGGW	5 cut(s)	299, 457, 1378, 2264, 2327
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bsc4I	CCNNNNNNNGG	8 cut(s)	132, 953, 1343, 1397, 1649, 1672, 2359, 2534
Bse118I	RCCGGY	5 cut(s)	140, 197, 2327, 2492, 2748
Bse1I	ACTGG	5 cut(s)	811, 1216, 1426, 1621, 2000
Bse21I	CCTNAGG	1 cut(s)	2358
Bse3DI	GCAATG	2 cut(s)	2043, 2497
Bse8I	GATNNNNATC	2 cut(s)	585, 966
BseAI	TCCGGA	1 cut(s)	457
BseBI	CCWGG	2 cut(s)	160, 1667
BseCI	ATCGAT	1 cut(s)	2685
BseDI	CCNNGG	6 cut(s)	10, 87, 159, 325, 446, 2049
BseGI	GGATG	8 cut(s)	113, 928, 1454, 1662, 1933, 2059, 2277, 2617
BseJI	GATNNNNATC	2 cut(s)	585, 966
BseLI	CCNNNNNNNGG	8 cut(s)	132, 953, 1343, 1397, 1649, 1672, 2359, 2534
BseMI	GCAATG	2 cut(s)	2043, 2497
BseMII	CTCAG	8 cut(s)	250, 1827, 1854, 2349, 2412, 2498, 2658, 2757
BseNI	ACTGG	5 cut(s)	811, 1216, 1426, 1621, 2000
BseRI	GAGGAG	3 cut(s)	1723, 1791, 2375
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	5 cut(s)	140, 579, 2270, 2514, 2650
BseYI	CCCAGC	1 cut(s)	2714
BsgI	GTGCAG	3 cut(s)	80, 139, 2063
Bsh1236I	CGCG	1 cut(s)	620
BshNI	GGYRCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	2327
BshVI	ATCGAT	1 cut(s)	2685
BsiHKAI	GWGCWC	1 cut(s)	1959
BsiHKCI	CYCGRG	2 cut(s)	310, 478
BslFI	GGGAC	4 cut(s)	1228, 1623, 1920, 1984
BslI	CCNNNNNNNGG	8 cut(s)	132, 953, 1343, 1397, 1649, 1672, 2359, 2534
BsmAI	GTCTC	8 cut(s)	175, 297, 320, 996, 1183, 2106, 2207, 2212
BsmBI	CGTCTC	1 cut(s)	2207
BsmFI	GGGAC	4 cut(s)	1228, 1623, 1920, 1984
Bso31I	GGTCTC	1 cut(s)	2106
BsoBI	CYCGRG	2 cut(s)	310, 478
Bsp119I	TTCGAA	4 cut(s)	250, 584, 626, 758
Bsp120I	GGGCCC	1 cut(s)	880
Bsp1286I	GDGCHC	2 cut(s)	884, 1959
Bsp13I	TCCGGA	1 cut(s)	457
Bsp1407I	TGTACA	1 cut(s)	2292
Bsp143I	GATC	6 cut(s)	967, 1048, 1570, 1686, 2322, 2431
Bsp1720I	GCTNAGC	1 cut(s)	2484
Bsp19I	CCATGG	1 cut(s)	87
BspCNI	CTCAG	8 cut(s)	249, 1828, 1855, 2350, 2413, 2497, 2659, 2758
BspDI	ATCGAT	1 cut(s)	2685
BspEI	TCCGGA	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	620
BspLI	GGNNCC	9 cut(s)	145, 508, 882, 883, 1383, 1389, 2016, 2247, 2514
BspMI	ACCTGC	2 cut(s)	1130, 2085
BspPI	GGATC	3 cut(s)	962, 1043, 2426
BspT104I	TTCGAA	4 cut(s)	250, 584, 626, 758
BspT107I	GGYRCC	1 cut(s)	143
BspTI	CTTAAG	2 cut(s)	1250, 2117
BspTNI	GGTCTC	1 cut(s)	2106
BsrDI	GCAATG	2 cut(s)	2043, 2497
BsrFI	RCCGGY	5 cut(s)	140, 197, 2327, 2492, 2748
BsrGI	TGTACA	1 cut(s)	2292
BsrI	ACTGG	5 cut(s)	811, 1216, 1426, 1621, 2000
BssAI	RCCGGY	5 cut(s)	140, 197, 2327, 2492, 2748
BssECI	CCNNGG	6 cut(s)	10, 87, 159, 325, 446, 2049
BssMI	GATC	6 cut(s)	967, 1048, 1570, 1686, 2322, 2431
BssSI	CACGAG	1 cut(s)	172
BssT1I	CCWWGG	2 cut(s)	87, 2049
Bst2BI	CACGAG	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	160, 1667
Bst4CI	ACNGT	5 cut(s)	48, 362, 1768, 2084, 2479
Bst6I	CTCTTC	2 cut(s)	1805, 2698
BstAFI	CTTAAG	2 cut(s)	1250, 2117
BstAPI	GCANNNNNTGC	3 cut(s)	150, 274, 283
BstAUI	TGTACA	1 cut(s)	2292
BstBI	TTCGAA	4 cut(s)	250, 584, 626, 758
BstC8I	GCNNGC	9 cut(s)	84, 142, 1137, 1364, 1847, 2154, 2354, 2490, 2661
BstDSI	CCRYGG	2 cut(s)	87, 446
BstEII	GGTNACC	2 cut(s)	193, 1010
BstENI	CCTNNNNNAGG	1 cut(s)	1341
BstF5I	GGATG	8 cut(s)	113, 928, 1454, 1662, 1933, 2059, 2277, 2617
BstFNI	CGCG	1 cut(s)	620
BstHHI	GCGC	3 cut(s)	55, 1373, 2507
BstKTI	GATC	6 cut(s)	970, 1051, 1573, 1689, 2325, 2434
BstMAI	GTCTC	8 cut(s)	175, 297, 320, 996, 1183, 2106, 2207, 2212
BstMBI	GATC	6 cut(s)	967, 1048, 1570, 1686, 2322, 2431
BstNI	CCWGG	2 cut(s)	160, 1667
BstNSI	RCATGY	2 cut(s)	1092, 1963
BstPAI	GACNNNNGTC	1 cut(s)	2535
BstPI	GGTNACC	2 cut(s)	193, 1010
BstSCI	CCNGG	4 cut(s)	9, 158, 528, 1665
BstSFI	CTRYAG	1 cut(s)	2208
BstSLI	GKGCMC	1 cut(s)	884
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	5 cut(s)	140, 579, 2270, 2514, 2650
BstV2I	GAAGAC	1 cut(s)	2041
BstXI	CCANNNNNNTGG	3 cut(s)	1006, 2025, 2050
Bsu15I	ATCGAT	1 cut(s)	2685
Bsu36I	CCTNAGG	1 cut(s)	2358
BsuI	GTATCC	1 cut(s)	2716
BsuTUI	ATCGAT	1 cut(s)	2685
BtgI	CCRYGG	2 cut(s)	87, 446
BtrI	CACGTC	2 cut(s)	261, 787
BtsCI	GGATG	8 cut(s)	113, 928, 1454, 1662, 1933, 2059, 2277, 2617
BtsI	GCAGTG	2 cut(s)	1812, 2579
BtsIMutI	CAGTG	5 cut(s)	44, 804, 1614, 1812, 2579
BveI	ACCTGC	2 cut(s)	1130, 2085
Cac8I	GCNNGC	9 cut(s)	84, 142, 1137, 1364, 1847, 2154, 2354, 2490, 2661
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	3 cut(s)	55, 1373, 2507
Cfr10I	RCCGGY	5 cut(s)	140, 197, 2327, 2492, 2748
Cfr13I	GGNCC	8 cut(s)	76, 162, 740, 880, 881, 1351, 1652, 1885
ClaI	ATCGAT	1 cut(s)	2685
Csp6I	GTAC	4 cut(s)	1143, 1292, 2293, 2518
CspAI	ACCGGT	1 cut(s)	2327
CviQI	GTAC	4 cut(s)	1143, 1292, 2293, 2518
DpnI	GATC	6 cut(s)	969, 1050, 1572, 1688, 2324, 2433
DpnII	GATC	6 cut(s)	967, 1048, 1570, 1686, 2322, 2431
DraI	TTTAAA	1 cut(s)	720
DraIII	CACNNNGTG	3 cut(s)	50, 1903, 2377
EaeI	YGGCCR	1 cut(s)	2088
Eam1104I	CTCTTC	2 cut(s)	1805, 2698
EarI	CTCTTC	2 cut(s)	1805, 2698
EciI	GGCGGA	1 cut(s)	2180
Eco130I	CCWWGG	2 cut(s)	87, 2049
Eco147I	AGGCCT	4 cut(s)	324, 476, 1845, 2527
Eco24I	GRGCYC	1 cut(s)	884
Eco31I	GGTCTC	1 cut(s)	2106
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	5 cut(s)	76, 740, 1351, 1652, 1885
Eco57I	CTGAAG	3 cut(s)	320, 395, 1517
Eco81I	CCTNAGG	1 cut(s)	2358
Eco88I	CYCGRG	2 cut(s)	310, 478
Eco91I	GGTNACC	2 cut(s)	193, 1010
EcoNI	CCTNNNNNAGG	1 cut(s)	1341
EcoO109I	RGGNCCY	3 cut(s)	740, 880, 881
EcoO65I	GGTNACC	2 cut(s)	193, 1010
EcoRII	CCWGG	2 cut(s)	158, 1665
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	87, 2049
EcoT38I	GRGCYC	1 cut(s)	884
ErhI	CCWWGG	2 cut(s)	87, 2049
Esp3I	CGTCTC	1 cut(s)	2207
FaqI	GGGAC	4 cut(s)	1228, 1623, 1920, 1984
FauI	CCCGC	5 cut(s)	373, 593, 613, 2145, 2711
FbaI	TGATCA	3 cut(s)	1570, 1686, 2322
FblI	GTMKAC	1 cut(s)	1981
Fnu4HI	GCNGC	6 cut(s)	154, 593, 1964, 2259, 2503, 2664
FokI	GGATG	8 cut(s)	100, 935, 1461, 1649, 1940, 2066, 2284, 2624
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	6 cut(s)	154, 593, 1964, 2259, 2503, 2664
FspBI	CTAG	8 cut(s)	845, 1359, 1368, 1469, 2031, 2222, 2375, 2466
GlaI	GCGC	3 cut(s)	54, 1372, 2506
GluI	GCNGC	6 cut(s)	154, 593, 1964, 2259, 2503, 2664
GsaI	CCCAGC	1 cut(s)	2718
GsuI	CTGGAG	3 cut(s)	2033, 2175, 2232
HhaI	GCGC	3 cut(s)	55, 1373, 2507
Hin6I	GCGC	3 cut(s)	53, 1371, 2505
HinP1I	GCGC	3 cut(s)	53, 1371, 2505
HincII	GTYRAC	1 cut(s)	1179
HindII	GTYRAC	1 cut(s)	1179
HindIII	AAGCTT	1 cut(s)	106
HphI	GGTGA	7 cut(s)	289, 395, 841, 1415, 1580, 2317, 2363
Hpy166II	GTNNAC	5 cut(s)	346, 735, 1179, 1982, 2293
Hpy188I	TCNGA	8 cut(s)	225, 339, 432, 486, 1448, 1864, 1889, 2785
Hpy8I	GTNNAC	5 cut(s)	346, 735, 1179, 1982, 2293
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	9 cut(s)	130, 334, 419, 448, 618, 828, 2000, 2133, 2763
HpyCH4III	ACNGT	5 cut(s)	48, 362, 1768, 2084, 2479
HpyCH4IV	ACGT	4 cut(s)	260, 786, 857, 1022
HpySE526I	ACGT	4 cut(s)	260, 786, 857, 1022
HspAI	GCGC	3 cut(s)	53, 1371, 2505
Kpn2I	TCCGGA	1 cut(s)	457
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Ksp22I	TGATCA	3 cut(s)	1570, 1686, 2322
Kzo9I	GATC	6 cut(s)	967, 1048, 1570, 1686, 2322, 2431
LmnI	GCTCC	7 cut(s)	506, 1228, 1393, 2014, 2194, 2251, 2512
Lsp1109I	GCAGC	5 cut(s)	140, 579, 2270, 2514, 2650
LweI	GCATC	3 cut(s)	1048, 2401, 2602
MaeI	CTAG	8 cut(s)	845, 1359, 1368, 1469, 2031, 2222, 2375, 2466
MaeII	ACGT	4 cut(s)	260, 786, 857, 1022
MalI	GATC	6 cut(s)	969, 1050, 1572, 1688, 2324, 2433
MboI	GATC	6 cut(s)	967, 1048, 1570, 1686, 2322, 2431
MfeI	CAATTG	1 cut(s)	2340
MhlI	GDGCHC	2 cut(s)	884, 1959
MlsI	TGGCCA	1 cut(s)	2090
MluNI	TGGCCA	1 cut(s)	2090
MlyI	GAGTC	9 cut(s)	177, 280, 322, 490, 1185, 1634, 1966, 2684, 2777
MmeI	TCCRAC	6 cut(s)	627, 894, 1426, 1438, 1912, 2459
Mox20I	TGGCCA	1 cut(s)	2090
MroI	TCCGGA	1 cut(s)	457
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	3 cut(s)	362, 437, 731
MscI	TGGCCA	1 cut(s)	2090
MslI	CAYNNNNRTG	4 cut(s)	551, 720, 1566, 2023
Msp20I	TGGCCA	1 cut(s)	2090
MspA1I	CMGCKG	2 cut(s)	592, 2718
MspCI	CTTAAG	2 cut(s)	1250, 2117
MspR9I	CCNGG	4 cut(s)	11, 160, 530, 1667
MunI	CAATTG	1 cut(s)	2340
MvaI	CCWGG	2 cut(s)	160, 1667
MvnI	CGCG	1 cut(s)	620
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	2 cut(s)	11, 530
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	6 cut(s)	967, 1048, 1570, 1686, 2322, 2431
NgoMIV	GCCGGC	1 cut(s)	140
NlaIV	GGNNCC	9 cut(s)	145, 508, 882, 883, 1383, 1389, 2016, 2247, 2514
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	7 cut(s)	42, 63, 1403, 1714, 1895, 2369, 2377
NspI	RCATGY	2 cut(s)	1092, 1963
NspV	TTCGAA	4 cut(s)	250, 584, 626, 758
PaeR7I	CTCGAG	1 cut(s)	478
PceI	AGGCCT	4 cut(s)	324, 476, 1845, 2527
PciI	ACATGT	1 cut(s)	1088
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	3 cut(s)	362, 437, 731
PfeI	GAWTC	8 cut(s)	433, 454, 581, 586, 661, 832, 1113, 1820
PflFI	GACNNNGTC	1 cut(s)	1893
PflMI	CCANNNNNTGG	2 cut(s)	132, 1649
PfoI	TCCNGGA	1 cut(s)	528
PinAI	ACCGGT	1 cut(s)	2327
PkrI	GCNGC	6 cut(s)	155, 594, 1965, 2260, 2504, 2665
PleI	GAGTC	9 cut(s)	176, 279, 321, 489, 1185, 1633, 1966, 2684, 2776
PpsI	GAGTC	9 cut(s)	176, 279, 321, 489, 1185, 1633, 1966, 2684, 2776
PpuMI	RGGWCCY	1 cut(s)	740
PscI	ACATGT	1 cut(s)	1088
PshAI	GACNNNNGTC	1 cut(s)	2535
PshBI	ATTAAT	1 cut(s)	2312
Psp5II	RGGWCCY	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	158, 1665
PspEI	GGTNACC	2 cut(s)	193, 1010
PspFI	CCCAGC	1 cut(s)	2714
PspGI	CCWGG	2 cut(s)	158, 1665
PspN4I	GGNNCC	9 cut(s)	145, 508, 882, 883, 1383, 1389, 2016, 2247, 2514
PspOMI	GGGCCC	1 cut(s)	880
PspPI	GGNCC	8 cut(s)	76, 162, 740, 880, 881, 1351, 1652, 1885
PspPPI	RGGWCCY	1 cut(s)	740
PspXI	VCTCGAGB	1 cut(s)	478
PstNI	CAGNNNCTG	1 cut(s)	274
PsyI	GACNNNGTC	1 cut(s)	1893
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	4 cut(s)	1144, 1293, 2294, 2519
RsaNI	GTAC	4 cut(s)	1143, 1292, 2293, 2518
RseI	CAYNNNNRTG	4 cut(s)	551, 720, 1566, 2023
SatI	GCNGC	6 cut(s)	154, 593, 1964, 2259, 2503, 2664
Sau3AI	GATC	6 cut(s)	967, 1048, 1570, 1686, 2322, 2431
Sau96I	GGNCC	8 cut(s)	76, 162, 740, 880, 881, 1351, 1652, 1885
SchI	GAGTC	9 cut(s)	177, 280, 322, 490, 1185, 1634, 1966, 2684, 2777
ScrFI	CCNGG	4 cut(s)	11, 160, 530, 1667
SduI	GDGCHC	2 cut(s)	884, 1959
SfaNI	GCATC	3 cut(s)	1048, 2401, 2602
SfcI	CTRYAG	1 cut(s)	2208
Sfr274I	CTCGAG	1 cut(s)	478
SfuI	TTCGAA	4 cut(s)	250, 584, 626, 758
SinI	GGWCC	5 cut(s)	76, 740, 1351, 1652, 1885
SlaI	CTCGAG	1 cut(s)	478
SmiI	ATTTAAAT	1 cut(s)	720
SmiMI	CAYNNNNRTG	4 cut(s)	551, 720, 1566, 2023
SmlI	CTYRAG	4 cut(s)	478, 1250, 2117, 2279
SmoI	CTYRAG	4 cut(s)	478, 1250, 2117, 2279
SseBI	AGGCCT	4 cut(s)	324, 476, 1845, 2527
SspI	AATATT	4 cut(s)	631, 777, 2310, 2709
SspMI	CTAG	8 cut(s)	845, 1359, 1368, 1469, 2031, 2222, 2375, 2466
StuI	AGGCCT	4 cut(s)	324, 476, 1845, 2527
StyD4I	CCNGG	4 cut(s)	9, 158, 528, 1665
StyI	CCWWGG	2 cut(s)	87, 2049
SwaI	ATTTAAAT	1 cut(s)	720
TaaI	ACNGT	5 cut(s)	48, 362, 1768, 2084, 2479
TaiI	ACGT	4 cut(s)	263, 789, 860, 1025
TaqI	TCGA	9 cut(s)	250, 479, 584, 611, 626, 758, 992, 1303, 2685
TaqII	GACCGA	3 cut(s)	416, 713, 944
TatI	WGTACW	1 cut(s)	2292
TauI	GCSGC	1 cut(s)	1966
TfiI	GAWTC	8 cut(s)	433, 454, 581, 586, 661, 832, 1113, 1820
TscAI	CASTG	5 cut(s)	51, 811, 1621, 1812, 2579
TseFI	GTSAC	7 cut(s)	42, 63, 1403, 1714, 1895, 2369, 2377
TseI	GCWGC	5 cut(s)	153, 592, 2258, 2502, 2663
Tsp45I	GTSAC	7 cut(s)	42, 63, 1403, 1714, 1895, 2369, 2377
TspGWI	ACGGA	1 cut(s)	2284
TspRI	CASTG	5 cut(s)	51, 811, 1621, 1812, 2579
Tth111I	GACNNNGTC	1 cut(s)	1893
Van91I	CCANNNNNTGG	2 cut(s)	132, 1649
Vha464I	CTTAAG	2 cut(s)	1250, 2117
VpaK11BI	GGWCC	5 cut(s)	76, 740, 1351, 1652, 1885
VspI	ATTAAT	1 cut(s)	2312
XagI	CCTNNNNNAGG	1 cut(s)	1341
XapI	RAATTY	3 cut(s)	1537, 1587, 2097
XceI	RCATGY	2 cut(s)	1092, 1963
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1673
XhoI	CTCGAG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	1981
XmnI	GAANNNNTTC	3 cut(s)	362, 437, 731
XspI	CTAG	8 cut(s)	845, 1359, 1368, 1469, 2031, 2222, 2375, 2466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.