Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003113

Physical Location & Seq

Genomic Coordinates Forward (+)

62805643 .. 62809872

Gene Structure 4230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2778 bp

ATGGGTTTCCTGTTGCTGTTGCTGTTGCTGTCACAGTGTGGGGCTGTGCAGCCCCAGAGCGAGGACCAGCCAGCCATGGAAGATATCCTGAAAGGCTTGACATCCAAACTACCCAACAAGTGGAAGGCCGGCTCCGATTGCTGCACCTGGGGCGGAGTCTCGTGCGACAACAGCAACAGGGTAACCGGCCTCGTAATCAAGGAGTTAAATCTGACGGGTACACTCAGTCCGTCGGTTCGAAACCTCACGTCGTTGCAGAATCTGCAATTTATGCGGAACAAACTCACGGGAGACTTCCCCAGTCTCAAAGGCCTCGGTTCGCTCCAGAAGCTTTTCGGCAACGAGAACGGTTTCACTTCTTTTCCGGCGGGTGATTTCTTCTCCGGCCTTTCTTCCCTTCAGCAAATCTTCATCGGTCAGAATCCCTTCTCCCCGTGGCAGATTCCGGAGAGCATCAAAGAGGCCTCGAGTCTGACGACATTTTTAGCTGGTGGAGCCAACATTAGAGGTAAAATCCCGGATTACTTTAACTCCACCTATATGCCGAGTTTGACAGACTTGGATTTGGATTCGAATCAGCTGCAAGGCGGGTTGCCTTCCAGTTTTGCGGGTTCGAATATTAACAAACTTAGGTTGGAGAACAATGGGAATCTTAATGGCACTCTTGATGTGTTACAGAACATGACCCAGCTGAATGAAGTTCATTTAAATGGGAATAAGTTCACAGGTCCTTTGCCAGATTTTTCGAATATCATCAACTTAACATTCTTTGACGTGAGGGATAATCAGCTCACTGGTGTTATTCCTTCTTCATTGGTGAATCAACCCTCCCTAGCTAATGTTACGTTGAGCAACAATTTGTTTCAGGGCCCCAAGCCCAAGTTCAAGAGTGGTGTTGGGTTGGATATGGATATAGGGAATATGTTTTGCAATCCTAATGTCGGTCAAGATTGCGATCCCCGTGTTGATATACTGCTTTCGATTGCCAGAGACATGGGTTACCCTACTACGTTTGCACAAAATTGGATGGGGAATGATCCTTGTGCTGCCAATGGTGGTTCTTGGCTTGGCTTGACATGTTCAGGAGGGAACATTACCAGAATCAACTTTGCTAAAAGGGGTCTGGCAGGTACAATATCCTCTAACTTTTCCTTGCTTACATCGTTGACAGATTTGAGACTCAATGATAATTTCTTGACTGGGACTATACCTGTGGAGCTTACGAAACTTCCAAACCTTAAGAATGTAGATTTCTCAAACAATAGACTCTATGGTAAAATACCACAGTTTCGAGATGGTGTGGTTGTGAAATTGGAGGGAAACCCTGATATAGGTAAGGACCAGCCTAGCACGCCTAGCACACCTCCGAGTCCTAACGGTGGAGGTGACAAGAAATCCAACACTGGTGTGATTATTGGGGTTGTTGTCGGATGTATTGTTGGATTGGTTCTAGTTGGGGTTCTCGTCTTTTGTATGCTGAAGAAAAAACAGAGGCCTTCTGGTAAAGTGCAAAGTCCAAATTCGTTGGTTATACACCCTCGTCATTCTGGTGATCAAAATGCTGTCAAAATTTCAGTTGCTAATAGGTTAAATAGCAGTGGAAATGAGTCTCACAATAGTCCCTCAAATAATGGACCTAATGACATCCATGTTGAGGCTGGAAATATGATCATTTCTATCCAAATTTTGAGGAGTGTGACCAATAACTTCAATGAGGATAAGATATTGGGAAAAGGTGGGTTTGGAACTGTGTATGGAGGAGAATTGCATGATGGAACAAAAATTGCAGTGAAGAGAATGGAATCCGGAGTGGTAGCTGAGAAAGGCCTGCATGAGTTCAAGTCTGAGATTGCGGTTCTTACTAAGGTCCGACATCGCCACTTGGTGGGACTTCTTGGATATTGTTTGGATGGGAATGAGAGGCTTCTTGTCTATGAGCACATGCCGCAGGGGACTCTTAGTAGACATTTGTTCAACTGGAAAGAAGAAGGGCTGGAGCCACTTGAATGGACTAGAAGACTGACCATTGCCTTGGATGTTGCGAGAGGGGTTGAATACCTGCACGGTTTGGCCAACGAAATTTTCATTCATAGAGACCTTAAGCCTTCTAATATATTACTTGGAGATGATATGCGGGCGAAAGTGGCAGACTTTGGATTGGTTCGTCTTGCTCCAGCAGGGAAAGCCTCTATAGAGACGAGACTAGCAGGAACTTTTGGCTATTTGGCTCCAGAATATGCAGCAACCGGACGGATGACACTCAAGGTAGATGTGTACAGCTTTGGTGTAATATTAATGGAGTTGATCACTGGTAGAAAGGCAATTGACGAAAGCCAGCCTGAGGAGAGTTGTCACCTAGTGACATGGTTTCGAAGAAAGCTCATTAAAACAGATGCACTCCCTGAGATTGTTGATCCAACCATTGATGTCAATGAGGAAACTCTCTCTAGTATAAGCACGGTGGCTGAGCTTGCCGGTCATTGCAGCGCAAGGGAGCCATACCAAAGGCCTGACATGGGTCATGCAGTCAATGTACTTTCATCACTTGTTGAGCAGTGGAAGCCCTCTAAACAAGAAGATTTTGATGACATGGATGCAATCAACTTTGATGTGCCACTAAATGAAGCAGTAAAGAGGTGGCAGGCTGCTGAGGGCAAAAGCAACATCGATGACTCTTCATCTTCATCAATATTTCCTAGCGGGGATACTACCCAGACCAGCATACCTAACCGGCCTTCTGGATTTGCTGAGTCTTTTACATCATCAGATGGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

925

Amino Acids

100.42

Weight (kDa)

5.96

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	570 - 843	8.2e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	573 - 790	1.6e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01820
fragaria_vesca	FvH4_4g33170 FvH4_4g33170 FvH4_4g33171
malus_domestica	MD13G1017200.v1.1 MD16G1015000.v1.1 MD16G1015200.v1.1
prunus_persica	Prupe.1G336300_v2.0.a1 Prupe.1G336300_v2.0.a1
pyrus_communis	pycom13g01480 pycom16g01400
rosa_chinensis	RchiOBHm_Chr4g0442211 RchiOBHm_Chr4g0442221 RchiOBHm_Chr4g0442231
rosa_laevigata	RLG00000006022 RLG00000006023
rosa_multiflora	Rmu_co8222306.1_g000001 Rmu_sc0000124.1_g000060 Rmu_sc0000124.1_g000062 Rmu_sc0010284.1_g000002 Rmu_sc0010284.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383140 Rroxscaffold_5G00383150
rosa_rugosa	Rorug04G0339700 Rorug04G0339800 Rorug04G0339900
rosa_samantha	Rh4AG391300 Rh4AG391400 Rh4BG405000 Rh4BG405100 Rh4CG420100 Rh4CG420200 Rh4DG398100 Rh4DG398200 Rh4DG398300
rosa_wichuraiana	Rw4G033820 Rw4G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1118, 2067
AccB7I	CCANNNNNTGG	2 cut(s)	120, 1885
AccI	GTMKAC	1 cut(s)	1963
AccIII	TCCGGA	2 cut(s)	445, 1805
AclWI	GGATC	3 cut(s)	950, 1031, 2408
AcoI	YGGCCR	1 cut(s)	2070
AcsI	RAATTY	4 cut(s)	1519, 1569, 1683, 2079
AcuI	CTGAAG	2 cut(s)	383, 1499
AdeI	CACNNNGTG	3 cut(s)	38, 1885, 2359
AfaI	GTAC	4 cut(s)	220, 1132, 2276, 2535
AfiI	CCNNNNNNNGG	9 cut(s)	61, 120, 941, 1331, 1379, 1654, 1885, 2341, 2516
AflII	CTTAAG	2 cut(s)	1238, 2099
AflIII	ACRYGT	1 cut(s)	1076
AgsI	TTSAA	6 cut(s)	886, 1711, 1840, 1975, 2006, 2054
AjiI	CACGTC	2 cut(s)	249, 775
AjnI	CCWGG	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	4 cut(s)	866, 898, 2066, 2098
AleI	CACNNNNGTG	1 cut(s)	1406
Alw21I	GWGCWC	1 cut(s)	1941
Alw26I	GTCTC	9 cut(s)	163, 285, 308, 984, 1171, 1614, 2088, 2189, 2194
AlwI	GGATC	3 cut(s)	950, 1031, 2408
AlwNI	CAGNNNCTG	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	466
Aor13HI	TCCGGA	2 cut(s)	445, 1805
ApaI	GGGCCC	1 cut(s)	872
ApeKI	GCWGC	7 cut(s)	49, 141, 580, 1046, 2240, 2484, 2645
ApoI	RAATTY	4 cut(s)	1519, 1569, 1683, 2079
AseI	ATTAAT	1 cut(s)	2294
Asp700I	GAANNNNTTC	4 cut(s)	332, 350, 425, 719
AspLEI	GCGC	1 cut(s)	2489
AspS9I	GGNCC	7 cut(s)	64, 728, 868, 869, 1339, 1634, 1867
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	5 cut(s)	383, 829, 1397, 1562, 2345
AsuII	TTCGAA	5 cut(s)	238, 572, 614, 746, 2371
AvaI	CYCGRG	1 cut(s)	466
AvaII	GGWCC	5 cut(s)	64, 728, 1339, 1634, 1867
AxyI	CCTNAGG	1 cut(s)	2340
BaeGI	GKGCMC	1 cut(s)	872
BalI	TGGCCA	1 cut(s)	2072
BanII	GRGCYC	1 cut(s)	872
BauI	CACGAG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	2023
Bbv12I	GWGCWC	1 cut(s)	1941
BbvCI	CCTCAGC	1 cut(s)	2649
BbvI	GCAGC	7 cut(s)	61, 128, 567, 1033, 2252, 2496, 2632
BccI	CCATC	5 cut(s)	1021, 1289, 1766, 1904, 2762
BcgI	CGANNNNNNTGC	2 cut(s)	562, 596
BciT130I	CCWGG	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	2698
BclI	TGATCA	3 cut(s)	1552, 1668, 2304
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	9 cut(s)	163, 285, 308, 984, 1171, 1614, 2088, 2189, 2194
BfaI	CTAG	9 cut(s)	833, 1347, 1356, 1451, 2013, 2204, 2357, 2448, 2697
BfmI	CTRYAG	1 cut(s)	2190
BfrI	CTTAAG	2 cut(s)	1238, 2099
BfuAI	ACCTGC	2 cut(s)	1118, 2067
BfuI	GTATCC	1 cut(s)	2698
BisI	GCNGC	8 cut(s)	50, 142, 581, 1047, 1946, 2241, 2485, 2646
BlpI	GCTNAGC	1 cut(s)	2466
BlsI	GCNGC	8 cut(s)	51, 143, 582, 1048, 1947, 2242, 2486, 2647
Bme1390I	CCNGG	2 cut(s)	148, 518
Bme18I	GGWCC	5 cut(s)	64, 728, 1339, 1634, 1867
BmeT110I	CYCGRG	1 cut(s)	466
BmgBI	CACGTC	2 cut(s)	249, 775
BmgT120I	GGNCC	7 cut(s)	64, 728, 868, 869, 1339, 1634, 1867
BmiI	GGNNCC	7 cut(s)	133, 496, 870, 871, 1998, 2229, 2496
BmrFI	CCNGG	2 cut(s)	148, 518
BmrI	ACTGGG	2 cut(s)	294, 1209
BmsI	GCATC	3 cut(s)	462, 2383, 2584
BmuI	ACTGGG	2 cut(s)	294, 1209
BoxI	GACNNNNGTC	1 cut(s)	2517
BpiI	GAAGAC	1 cut(s)	2023
BpmI	CTGGAG	4 cut(s)	308, 2015, 2157, 2214
Bpu10I	CCTNAGC	1 cut(s)	2649
Bpu1102I	GCTNAGC	1 cut(s)	2466
Bpu14I	TTCGAA	5 cut(s)	238, 572, 614, 746, 2371
BpuEI	CTTGAG	1 cut(s)	2246
BpuMI	CCSGG	1 cut(s)	518
Bsa29I	ATCGAT	1 cut(s)	2667
BsaBI	GATNNNNATC	2 cut(s)	573, 954
BsaI	GGTCTC	1 cut(s)	2088
BsaJI	CCNNGG	5 cut(s)	75, 147, 313, 434, 2031
BsaWI	WCCGGW	3 cut(s)	445, 1805, 2246
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	9 cut(s)	61, 120, 941, 1331, 1379, 1654, 1885, 2341, 2516
Bse118I	RCCGGY	4 cut(s)	128, 185, 2474, 2730
Bse1I	ACTGG	7 cut(s)	300, 600, 799, 1204, 1408, 1982, 2314
Bse21I	CCTNAGG	1 cut(s)	2340
Bse3DI	GCAATG	2 cut(s)	2025, 2479
Bse8I	GATNNNNATC	2 cut(s)	573, 954
BseAI	TCCGGA	2 cut(s)	445, 1805
BseBI	CCWGG	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	2667
BseDI	CCNNGG	5 cut(s)	75, 147, 313, 434, 2031
BseGI	GGATG	8 cut(s)	101, 1032, 1436, 1644, 1915, 2041, 2259, 2599
BseJI	GATNNNNATC	2 cut(s)	573, 954
BseLI	CCNNNNNNNGG	9 cut(s)	61, 120, 941, 1331, 1379, 1654, 1885, 2341, 2516
BseMI	GCAATG	2 cut(s)	2025, 2479
BseMII	CTCAG	8 cut(s)	238, 1809, 1836, 2331, 2394, 2457, 2640, 2739
BseNI	ACTGG	7 cut(s)	300, 600, 799, 1204, 1408, 1982, 2314
BseRI	GAGGAG	3 cut(s)	1705, 1773, 2357
BseSI	GKGCMC	1 cut(s)	872
BseXI	GCAGC	7 cut(s)	61, 128, 567, 1033, 2252, 2496, 2632
BseYI	CCCAGC	1 cut(s)	687
BsgI	GTGCAG	3 cut(s)	68, 127, 2045
BshVI	ATCGAT	1 cut(s)	2667
BsiHKAI	GWGCWC	1 cut(s)	1941
BsiHKCI	CYCGRG	1 cut(s)	466
BslFI	GGGAC	4 cut(s)	1216, 1605, 1902, 1966
BslI	CCNNNNNNNGG	9 cut(s)	61, 120, 941, 1331, 1379, 1654, 1885, 2341, 2516
BsmAI	GTCTC	9 cut(s)	163, 285, 308, 984, 1171, 1614, 2088, 2189, 2194
BsmBI	CGTCTC	1 cut(s)	2189
BsmFI	GGGAC	4 cut(s)	1216, 1605, 1902, 1966
Bso31I	GGTCTC	1 cut(s)	2088
BsoBI	CYCGRG	1 cut(s)	466
Bsp119I	TTCGAA	5 cut(s)	238, 572, 614, 746, 2371
Bsp120I	GGGCCC	1 cut(s)	868
Bsp1286I	GDGCHC	2 cut(s)	872, 1941
Bsp13I	TCCGGA	2 cut(s)	445, 1805
Bsp1407I	TGTACA	1 cut(s)	2274
Bsp143I	GATC	6 cut(s)	955, 1036, 1552, 1668, 2304, 2413
Bsp1720I	GCTNAGC	1 cut(s)	2466
Bsp19I	CCATGG	1 cut(s)	75
BspCNI	CTCAG	8 cut(s)	237, 1810, 1837, 2332, 2395, 2458, 2641, 2740
BspDI	ATCGAT	1 cut(s)	2667
BspEI	TCCGGA	2 cut(s)	445, 1805
BspLI	GGNNCC	7 cut(s)	133, 496, 870, 871, 1998, 2229, 2496
BspMI	ACCTGC	2 cut(s)	1118, 2067
BspPI	GGATC	3 cut(s)	950, 1031, 2408
BspT104I	TTCGAA	5 cut(s)	238, 572, 614, 746, 2371
BspTI	CTTAAG	2 cut(s)	1238, 2099
BspTNI	GGTCTC	1 cut(s)	2088
BsrDI	GCAATG	2 cut(s)	2025, 2479
BsrFI	RCCGGY	4 cut(s)	128, 185, 2474, 2730
BsrGI	TGTACA	1 cut(s)	2274
BsrI	ACTGG	7 cut(s)	300, 600, 799, 1204, 1408, 1982, 2314
BssAI	RCCGGY	4 cut(s)	128, 185, 2474, 2730
BssECI	CCNNGG	5 cut(s)	75, 147, 313, 434, 2031
BssMI	GATC	6 cut(s)	955, 1036, 1552, 1668, 2304, 2413
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	2 cut(s)	75, 2031
Bst2BI	CACGAG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	7 cut(s)	36, 350, 1287, 1379, 1750, 2066, 2461
Bst6I	CTCTTC	2 cut(s)	1787, 2680
BstAFI	CTTAAG	2 cut(s)	1238, 2099
BstAPI	GCANNNNNTGC	2 cut(s)	262, 271
BstAUI	TGTACA	1 cut(s)	2274
BstBI	TTCGAA	5 cut(s)	238, 572, 614, 746, 2371
BstC8I	GCNNGC	8 cut(s)	72, 130, 1352, 1829, 2136, 2336, 2472, 2643
BstDSI	CCRYGG	2 cut(s)	75, 434
BstEII	GGTNACC	2 cut(s)	181, 998
BstENI	CCTNNNNNAGG	1 cut(s)	1329
BstF5I	GGATG	8 cut(s)	101, 1032, 1436, 1644, 1915, 2041, 2259, 2599
BstHHI	GCGC	1 cut(s)	2489
BstKTI	GATC	6 cut(s)	958, 1039, 1555, 1671, 2307, 2416
BstMAI	GTCTC	9 cut(s)	163, 285, 308, 984, 1171, 1614, 2088, 2189, 2194
BstMBI	GATC	6 cut(s)	955, 1036, 1552, 1668, 2304, 2413
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	2 cut(s)	1080, 1945
BstPAI	GACNNNNGTC	1 cut(s)	2517
BstPI	GGTNACC	2 cut(s)	181, 998
BstSCI	CCNGG	2 cut(s)	146, 516
BstSFI	CTRYAG	1 cut(s)	2190
BstSLI	GKGCMC	1 cut(s)	872
BstV1I	GCAGC	7 cut(s)	61, 128, 567, 1033, 2252, 2496, 2632
BstV2I	GAAGAC	1 cut(s)	2023
BstXI	CCANNNNNNTGG	3 cut(s)	994, 2007, 2032
Bsu15I	ATCGAT	1 cut(s)	2667
Bsu36I	CCTNAGG	1 cut(s)	2340
BsuI	GTATCC	1 cut(s)	2698
BsuTUI	ATCGAT	1 cut(s)	2667
BtgI	CCRYGG	2 cut(s)	75, 434
BtgZI	GCGATG	1 cut(s)	1859
BtrI	CACGTC	2 cut(s)	249, 775
BtsCI	GGATG	8 cut(s)	101, 1032, 1436, 1644, 1915, 2041, 2259, 2599
BtsI	GCAGTG	3 cut(s)	1603, 1794, 2561
BtsIMutI	CAGTG	7 cut(s)	41, 792, 1401, 1603, 1794, 2307, 2561
BveI	ACCTGC	2 cut(s)	1118, 2067
Cac8I	GCNNGC	8 cut(s)	72, 130, 1352, 1829, 2136, 2336, 2472, 2643
CaiI	CAGNNNCTG	1 cut(s)	262
CfoI	GCGC	1 cut(s)	2489
Cfr10I	RCCGGY	4 cut(s)	128, 185, 2474, 2730
Cfr13I	GGNCC	7 cut(s)	64, 728, 868, 869, 1339, 1634, 1867
ClaI	ATCGAT	1 cut(s)	2667
Csp6I	GTAC	4 cut(s)	219, 1131, 2275, 2534
CviQI	GTAC	4 cut(s)	219, 1131, 2275, 2534
DpnI	GATC	6 cut(s)	957, 1038, 1554, 1670, 2306, 2415
DpnII	GATC	6 cut(s)	955, 1036, 1552, 1668, 2304, 2413
DraI	TTTAAA	1 cut(s)	708
DraIII	CACNNNGTG	3 cut(s)	38, 1885, 2359
EaeI	YGGCCR	1 cut(s)	2070
Eam1104I	CTCTTC	2 cut(s)	1787, 2680
EarI	CTCTTC	2 cut(s)	1787, 2680
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	75, 2031
Eco147I	AGGCCT	5 cut(s)	312, 464, 1495, 1827, 2509
Eco24I	GRGCYC	1 cut(s)	872
Eco31I	GGTCTC	1 cut(s)	2088
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	5 cut(s)	64, 728, 1339, 1634, 1867
Eco57I	CTGAAG	2 cut(s)	383, 1499
Eco81I	CCTNAGG	1 cut(s)	2340
Eco88I	CYCGRG	1 cut(s)	466
Eco91I	GGTNACC	2 cut(s)	181, 998
EcoNI	CCTNNNNNAGG	1 cut(s)	1329
EcoO109I	RGGNCCY	3 cut(s)	728, 868, 869
EcoO65I	GGTNACC	2 cut(s)	181, 998
EcoRII	CCWGG	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	75, 2031
EcoT38I	GRGCYC	1 cut(s)	872
ErhI	CCWWGG	2 cut(s)	75, 2031
Esp3I	CGTCTC	1 cut(s)	2189
FaqI	GGGAC	4 cut(s)	1216, 1605, 1902, 1966
FauI	CCCGC	5 cut(s)	361, 581, 601, 2127, 2693
FbaI	TGATCA	3 cut(s)	1552, 1668, 2304
FblI	GTMKAC	1 cut(s)	1963
Fnu4HI	GCNGC	8 cut(s)	50, 142, 581, 1047, 1946, 2241, 2485, 2646
FokI	GGATG	8 cut(s)	88, 1039, 1443, 1631, 1922, 2048, 2266, 2606
FriOI	GRGCYC	1 cut(s)	872
Fsp4HI	GCNGC	8 cut(s)	50, 142, 581, 1047, 1946, 2241, 2485, 2646
FspBI	CTAG	9 cut(s)	833, 1347, 1356, 1451, 2013, 2204, 2357, 2448, 2697
GlaI	GCGC	1 cut(s)	2488
GluI	GCNGC	8 cut(s)	50, 142, 581, 1047, 1946, 2241, 2485, 2646
GsaI	CCCAGC	1 cut(s)	691
GsuI	CTGGAG	4 cut(s)	308, 2015, 2157, 2214
HhaI	GCGC	1 cut(s)	2489
Hin6I	GCGC	1 cut(s)	2487
HinP1I	GCGC	1 cut(s)	2487
HincII	GTYRAC	1 cut(s)	1167
HindII	GTYRAC	1 cut(s)	1167
HindIII	AAGCTT	1 cut(s)	329
HphI	GGTGA	5 cut(s)	383, 829, 1397, 1562, 2345
Hpy166II	GTNNAC	5 cut(s)	221, 723, 1167, 1964, 2275
Hpy188I	TCNGA	9 cut(s)	136, 213, 420, 474, 1368, 1430, 1846, 1871, 2767
Hpy8I	GTNNAC	5 cut(s)	221, 723, 1167, 1964, 2275
Hpy99I	CGWCG	2 cut(s)	235, 253
HpyAV	CCTTC	9 cut(s)	118, 407, 436, 606, 816, 1506, 1982, 2115, 2745
HpyCH4III	ACNGT	7 cut(s)	36, 350, 1287, 1379, 1750, 2066, 2461
HpyCH4IV	ACGT	4 cut(s)	248, 774, 845, 1010
HpySE526I	ACGT	4 cut(s)	248, 774, 845, 1010
HspAI	GCGC	1 cut(s)	2487
Kpn2I	TCCGGA	2 cut(s)	445, 1805
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Ksp22I	TGATCA	3 cut(s)	1552, 1668, 2304
Kzo9I	GATC	6 cut(s)	955, 1036, 1552, 1668, 2304, 2413
LmnI	GCTCC	8 cut(s)	137, 327, 494, 1216, 1996, 2176, 2233, 2494
Lsp1109I	GCAGC	7 cut(s)	61, 128, 567, 1033, 2252, 2496, 2632
LweI	GCATC	3 cut(s)	462, 2383, 2584
MaeI	CTAG	9 cut(s)	833, 1347, 1356, 1451, 2013, 2204, 2357, 2448, 2697
MaeII	ACGT	4 cut(s)	248, 774, 845, 1010
MaeIII	GTNAC	9 cut(s)	30, 181, 672, 841, 998, 1385, 1696, 2351, 2359
MalI	GATC	6 cut(s)	957, 1038, 1554, 1670, 2306, 2415
MboI	GATC	6 cut(s)	955, 1036, 1552, 1668, 2304, 2413
MfeI	CAATTG	1 cut(s)	2322
MhlI	GDGCHC	2 cut(s)	872, 1941
MlsI	TGGCCA	1 cut(s)	2072
MluNI	TGGCCA	1 cut(s)	2072
MlyI	GAGTC	9 cut(s)	165, 478, 1173, 1260, 1378, 1616, 1948, 2666, 2759
MmeI	TCCRAC	7 cut(s)	615, 882, 1408, 1420, 1422, 1894, 2441
Mox20I	TGGCCA	1 cut(s)	2072
MroI	TCCGGA	2 cut(s)	445, 1805
MroNI	GCCGGC	1 cut(s)	128
MroXI	GAANNNNTTC	4 cut(s)	332, 350, 425, 719
MscI	TGGCCA	1 cut(s)	2072
MslI	CAYNNNNRTG	5 cut(s)	539, 708, 1406, 1548, 2005
Msp20I	TGGCCA	1 cut(s)	2072
MspA1I	CMGCKG	2 cut(s)	580, 691
MspCI	CTTAAG	2 cut(s)	1238, 2099
MspR9I	CCNGG	2 cut(s)	148, 518
MunI	CAATTG	1 cut(s)	2322
MvaI	CCWGG	1 cut(s)	148
NaeI	GCCGGC	1 cut(s)	130
NciI	CCSGG	1 cut(s)	518
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	6 cut(s)	955, 1036, 1552, 1668, 2304, 2413
NgoMIV	GCCGGC	1 cut(s)	128
NlaIV	GGNNCC	7 cut(s)	133, 496, 870, 871, 1998, 2229, 2496
NmeAIII	GCCGAG	1 cut(s)	570
NmuCI	GTSAC	5 cut(s)	30, 1385, 1696, 2351, 2359
NspI	RCATGY	2 cut(s)	1080, 1945
NspV	TTCGAA	5 cut(s)	238, 572, 614, 746, 2371
OliI	CACNNNNGTG	1 cut(s)	1406
PaeR7I	CTCGAG	1 cut(s)	466
PceI	AGGCCT	5 cut(s)	312, 464, 1495, 1827, 2509
PciI	ACATGT	1 cut(s)	1076
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PdiI	GCCGGC	1 cut(s)	130
PdmI	GAANNNNTTC	4 cut(s)	332, 350, 425, 719
PfeI	GAWTC	9 cut(s)	259, 421, 442, 569, 574, 649, 820, 1101, 1802
PflMI	CCANNNNNTGG	2 cut(s)	120, 1885
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	8 cut(s)	51, 143, 582, 1048, 1947, 2242, 2486, 2647
PleI	GAGTC	9 cut(s)	164, 477, 1173, 1260, 1377, 1615, 1948, 2666, 2758
PpsI	GAGTC	9 cut(s)	164, 477, 1173, 1260, 1377, 1615, 1948, 2666, 2758
PpuMI	RGGWCCY	1 cut(s)	728
PscI	ACATGT	1 cut(s)	1076
PshAI	GACNNNNGTC	1 cut(s)	2517
PshBI	ATTAAT	1 cut(s)	2294
Psp5II	RGGWCCY	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	146
PspEI	GGTNACC	2 cut(s)	181, 998
PspFI	CCCAGC	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	7 cut(s)	133, 496, 870, 871, 1998, 2229, 2496
PspOMI	GGGCCC	1 cut(s)	868
PspPI	GGNCC	7 cut(s)	64, 728, 868, 869, 1339, 1634, 1867
PspPPI	RGGWCCY	1 cut(s)	728
PspXI	VCTCGAGB	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	262
PvuII	CAGCTG	2 cut(s)	580, 691
RsaI	GTAC	4 cut(s)	220, 1132, 2276, 2535
RsaNI	GTAC	4 cut(s)	219, 1131, 2275, 2534
RseI	CAYNNNNRTG	5 cut(s)	539, 708, 1406, 1548, 2005
SatI	GCNGC	8 cut(s)	50, 142, 581, 1047, 1946, 2241, 2485, 2646
Sau3AI	GATC	6 cut(s)	955, 1036, 1552, 1668, 2304, 2413
Sau96I	GGNCC	7 cut(s)	64, 728, 868, 869, 1339, 1634, 1867
SchI	GAGTC	9 cut(s)	165, 478, 1173, 1260, 1378, 1616, 1948, 2666, 2759
ScrFI	CCNGG	2 cut(s)	148, 518
SduI	GDGCHC	2 cut(s)	872, 1941
SfaNI	GCATC	3 cut(s)	462, 2383, 2584
SfcI	CTRYAG	1 cut(s)	2190
Sfr274I	CTCGAG	1 cut(s)	466
SfuI	TTCGAA	5 cut(s)	238, 572, 614, 746, 2371
SinI	GGWCC	5 cut(s)	64, 728, 1339, 1634, 1867
SlaI	CTCGAG	1 cut(s)	466
SmiI	ATTTAAAT	1 cut(s)	708
SmiMI	CAYNNNNRTG	5 cut(s)	539, 708, 1406, 1548, 2005
SmlI	CTYRAG	4 cut(s)	466, 1238, 2099, 2261
SmoI	CTYRAG	4 cut(s)	466, 1238, 2099, 2261
SseBI	AGGCCT	5 cut(s)	312, 464, 1495, 1827, 2509
SspI	AATATT	3 cut(s)	619, 2292, 2691
SspMI	CTAG	9 cut(s)	833, 1347, 1356, 1451, 2013, 2204, 2357, 2448, 2697
StuI	AGGCCT	5 cut(s)	312, 464, 1495, 1827, 2509
StyD4I	CCNGG	2 cut(s)	146, 516
StyI	CCWWGG	2 cut(s)	75, 2031
SwaI	ATTTAAAT	1 cut(s)	708
TaaI	ACNGT	7 cut(s)	36, 350, 1287, 1379, 1750, 2066, 2461
TaiI	ACGT	4 cut(s)	251, 777, 848, 1013
TaqI	TCGA	9 cut(s)	238, 467, 572, 614, 746, 980, 1291, 2371, 2667
TaqII	GACCGA	2 cut(s)	404, 932
TatI	WGTACW	2 cut(s)	2274, 2533
TauI	GCSGC	1 cut(s)	1948
TfiI	GAWTC	9 cut(s)	259, 421, 442, 569, 574, 649, 820, 1101, 1802
TscAI	CASTG	7 cut(s)	41, 799, 1408, 1603, 1794, 2314, 2561
TseFI	GTSAC	5 cut(s)	30, 1385, 1696, 2351, 2359
TseI	GCWGC	7 cut(s)	49, 141, 580, 1046, 2240, 2484, 2645
Tsp45I	GTSAC	5 cut(s)	30, 1385, 1696, 2351, 2359
TspGWI	ACGGA	2 cut(s)	219, 2266
TspRI	CASTG	7 cut(s)	41, 799, 1408, 1603, 1794, 2314, 2561
Van91I	CCANNNNNTGG	2 cut(s)	120, 1885
Vha464I	CTTAAG	2 cut(s)	1238, 2099
VpaK11BI	GGWCC	5 cut(s)	64, 728, 1339, 1634, 1867
VspI	ATTAAT	1 cut(s)	2294
XagI	CCTNNNNNAGG	1 cut(s)	1329
XapI	RAATTY	4 cut(s)	1519, 1569, 1683, 2079
XceI	RCATGY	2 cut(s)	1080, 1945
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1655
XhoI	CTCGAG	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	1963
XmnI	GAANNNNTTC	4 cut(s)	332, 350, 425, 719
XspI	CTAG	9 cut(s)	833, 1347, 1356, 1451, 2013, 2204, 2357, 2448, 2697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.