Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003113

Physical Location & Seq

Genomic Coordinates Forward (+)

61462342 .. 61464015

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG398300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACCAGCTTGACTCCAGTTTGGCTACACGGTAATCAATTCACGGGTCCTTTACCAGAATTTTCAGAGCTTACCGACTTATTGGATTTGAATTTGGGGCATAACAAGCTCAAAGGTATTGTTCCTGCGTCTTTGCAAAACCTCAGTTTGCTTCAGAATGTCAGTTTGTCCAGCAATTTGCTTCAAGGACTTATGCCCAATTTCACCGGTGGTGCTATTAAGCAAGTGGACGTGACATCTAATAACTTTTGCACCAATGATGCTGGTACTAAATGCGATCCCCGCGTGACTATATTGCTCTCCATTGCCAAAGACATGGGTTACCCTACTGCGTTTGCAGAGAATTGGATAGGGAATGATCCTTGTGGTGGTAGTACTCATTGGACTGGTCTAACATGTTCAGGAAAAGATGACATTACAGTTCTCAATTTTCCCAACATGGGTCTGACGGAGATCCTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

16.48

Weight (kDa)

4.7

Isoelectric Point (pI)

25.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	21 - 61	8.9e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01820
fragaria_vesca	FvH4_4g33170 FvH4_4g33170 FvH4_4g33171
malus_domestica	MD13G1017200.v1.1 MD16G1015000.v1.1 MD16G1015200.v1.1
prunus_persica	Prupe.1G336300_v2.0.a1 Prupe.1G336300_v2.0.a1
pyrus_communis	pycom13g01480 pycom16g01400
rosa_chinensis	RchiOBHm_Chr4g0442211 RchiOBHm_Chr4g0442221 RchiOBHm_Chr4g0442231
rosa_laevigata	RLG00000006022 RLG00000006023
rosa_multiflora	Rmu_co8222306.1_g000001 Rmu_sc0000124.1_g000060 Rmu_sc0000124.1_g000062 Rmu_sc0010284.1_g000002 Rmu_sc0010284.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383140 Rroxscaffold_5G00383150
rosa_rugosa	Rorug04G0339700 Rorug04G0339800 Rorug04G0339900
rosa_samantha	Rh4AG391300 Rh4AG391400 Rh4BG405000 Rh4BG405100 Rh4CG420100 Rh4CG420200 Rh4DG398100 Rh4DG398200 Rh4DG398300
rosa_wichuraiana	Rw4G033820 Rw4G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	285
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	3 cut(s)	272, 353, 448
AcsI	RAATTY	2 cut(s)	59, 91
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	2 cut(s)	268, 376
AfiI	CCNNNNNNNGG	2 cut(s)	368, 440
AflIII	ACRYGT	1 cut(s)	395
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	91, 185
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	3 cut(s)	9, 70, 109
AluI	AGCT	3 cut(s)	9, 70, 109
AlwI	GGATC	3 cut(s)	272, 353, 448
ApoI	RAATTY	2 cut(s)	59, 91
AsiGI	ACCGGT	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	458
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 440
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	17, 391
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	458
BseLI	CCNNNNNNNGG	2 cut(s)	368, 440
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	17, 391
Bsh1236I	CGCG	1 cut(s)	285
BshTI	ACCGGT	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	368, 440
Bsp143I	GATC	3 cut(s)	277, 358, 453
BspACI	CCGC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	3 cut(s)	272, 353, 448
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	17, 391
BssAI	RCCGGY	1 cut(s)	206
BssMI	GATC	3 cut(s)	277, 358, 453
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	32, 421
BstDEI	CTNAG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	3 cut(s)	280, 361, 456
BstMBI	GATC	3 cut(s)	277, 358, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 282
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	399
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	456
BstUI	CGCG	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	453
BtrI	CACGTC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	267, 375
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	3 cut(s)	316, 396, 439
CviJI	RGCY	4 cut(s)	9, 25, 70, 109
CviKI_1	RGCY	4 cut(s)	9, 25, 70, 109
CviQI	GTAC	2 cut(s)	267, 375
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	3 cut(s)	279, 360, 455
DpnII	GATC	3 cut(s)	277, 358, 453
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	456
FaeI	CATG	3 cut(s)	319, 399, 442
FaiI	YATR	7 cut(s)	102, 194, 293, 317, 397, 440, 463
FatI	CATG	3 cut(s)	315, 395, 438
FauI	CCCGC	1 cut(s)	290
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	319, 399, 442
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	67, 156, 447
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	32, 421
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	136, 252, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 282
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	319, 399, 442
Kzo9I	GATC	3 cut(s)	277, 358, 453
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	232, 286, 320
MalI	GATC	3 cut(s)	279, 360, 455
MboI	GATC	3 cut(s)	277, 358, 453
MflI	RGATCY	1 cut(s)	453
MluCI	AATT	7 cut(s)	38, 59, 91, 175, 199, 343, 427
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	219
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	106, 282
NdeII	GATC	3 cut(s)	277, 358, 453
NlaIII	CATG	3 cut(s)	319, 399, 442
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	232, 286
NspI	RCATGY	1 cut(s)	399
PciI	ACATGT	1 cut(s)	395
PinAI	ACCGGT	1 cut(s)	206
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	47
PscI	ACATGT	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	456
PspEI	GGTNACC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	2 cut(s)	268, 376
RsaNI	GTAC	2 cut(s)	267, 375
SaqAI	TTAA	1 cut(s)	219
Sau3AI	GATC	3 cut(s)	277, 358, 453
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	1 cut(s)	376
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	458
SetI	ASST	6 cut(s)	11, 72, 111, 118, 144, 234
SfaNI	GCATC	1 cut(s)	250
SgrAI	CRCCGGYG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	7 cut(s)	38, 59, 91, 175, 199, 343, 427
SsiI	CCGC	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	32, 421
TaiI	ACGT	1 cut(s)	234
TasI	AATT	7 cut(s)	38, 59, 91, 175, 199, 343, 427
TatI	WGTACW	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	232, 286
Tsp45I	GTSAC	2 cut(s)	232, 286
TspGWI	ACGGA	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	2 cut(s)	59, 91
XceI	RCATGY	1 cut(s)	399
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.