Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003113

Physical Location & Seq

Genomic Coordinates Forward (+)

51294304 .. 51294645

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0339900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGCTGGCAGATTCGGAGTGTAACAAGCATGAGAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTGCTGATTTGGCAAAACTAGTTCCTGGCCAAGTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTGTAAGGAAGGTACTGGCTTTTCTTTGTAACTCAACTTTTTTCCTTTTTCTTTTCAAAGATGATGCTAAAGCATTGGAATTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

84

Amino Acids

9.35

Weight (kDa)

5.54

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAL_FSA	PF00923	10 - 59	5.4e-06	Transaldolase/Fructose-6-phosphate aldolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01820
fragaria_vesca	FvH4_4g33170 FvH4_4g33170 FvH4_4g33171
malus_domestica	MD13G1017200.v1.1 MD16G1015000.v1.1 MD16G1015200.v1.1
prunus_persica	Prupe.1G336300_v2.0.a1 Prupe.1G336300_v2.0.a1
pyrus_communis	pycom13g01480 pycom16g01400
rosa_chinensis	RchiOBHm_Chr4g0442211 RchiOBHm_Chr4g0442221 RchiOBHm_Chr4g0442231
rosa_laevigata	RLG00000006022 RLG00000006023
rosa_multiflora	Rmu_co8222306.1_g000001 Rmu_sc0000124.1_g000060 Rmu_sc0000124.1_g000062 Rmu_sc0010284.1_g000002 Rmu_sc0010284.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383140 Rroxscaffold_5G00383150
rosa_rugosa	Rorug04G0339700 Rorug04G0339800 Rorug04G0339900
rosa_samantha	Rh4AG391300 Rh4AG391400 Rh4BG405000 Rh4BG405100 Rh4CG420100 Rh4CG420200 Rh4DG398100 Rh4DG398200 Rh4DG398300
rosa_wichuraiana	Rw4G033820 Rw4G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	37, 245
AfaI	GTAC	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	223
AhlI	ACTAGT	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	37, 245
AspLEI	GCGC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	106
BfaI	CTAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	127, 220
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 146
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	3 cut(s)	32, 57, 161
CviJI	RGCY	3 cut(s)	74, 117, 185
CviKI_1	RGCY	3 cut(s)	74, 117, 185
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	115
EcoRI	GAATTC	2 cut(s)	37, 245
EcoRII	CCWGG	1 cut(s)	112
FaeI	CATG	3 cut(s)	35, 60, 164
FaiI	YATR	4 cut(s)	33, 58, 153, 162
FatI	CATG	3 cut(s)	31, 56, 160
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	35, 60, 164
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	19, 43
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 146
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	3 cut(s)	35, 60, 164
HspAI	GCGC	1 cut(s)	5
LpnPI	CCDG	3 cut(s)	99, 126, 167
LweI	GCATC	2 cut(s)	127, 220
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	3 cut(s)	23, 65, 194
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	4 cut(s)	37, 44, 165, 245
MluNI	TGGCCA	1 cut(s)	117
MnlI	CCTC	1 cut(s)	124
Mox20I	TGGCCA	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	98, 146
NlaIII	CATG	3 cut(s)	35, 60, 164
PfeI	GAWTC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	3 cut(s)	135, 145, 180
SfaNI	GCATC	2 cut(s)	127, 220
SpeI	ACTAGT	1 cut(s)	106
Sse9I	AATT	4 cut(s)	37, 44, 165, 245
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	112
TaiI	ACGT	1 cut(s)	145
TasI	AATT	4 cut(s)	37, 44, 165, 245
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	1 cut(s)	133
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	2 cut(s)	37, 245
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.