Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003113

Physical Location & Seq

Genomic Coordinates Forward (+)

55530913 .. 55534398

Gene Structure 3486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG405000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2796 bp

ATGGGTTTCCTGTTGCTGTTGCTGTTGCTGTTGCTGTCACAGTGTGGGGCTGTGCAGCCCCAGAGCGAGGACCAGCCAGCCATGGAAGATATCCTGAAAAGCTTGACATCCAAACTACCCAACAAGTGGAAGGCCGGCACCGATTGCTGCACCTGGGCCGGAGTCTCGTGCGACAATAGCAAGAAGGTAACCGGCCTCGTAATCAAGGAGTTAAATCTGACGGGTAAACTCAGTCCGGCGGTTCGAAACCTCACGTCGTTGCAGAGTCTGCAACTTATGCGGAACAGCCTCACCGGAGACTTCCCGAGTCTCAAAGGCCTCGGTTCGCTTCAGAAGGTTTACGCTAACGAGAACGGTTTCACTTCTTTTCCGGCGGGTGATTTCTTCTCCGGCCTTTCTTCCCTTCAGGAAATCTTCATCGGTCAGAATCCCTTCTCCCCGTGGCAGATTCCGGAGAGTATCAAAGAGGCCTCGAGTCTGACGACATTTCTAGCTGGTGGAGCCAACATTACAGGTAAAATCCCGGATTACTTTAACTCCACCTATCTGCCGAGTTTGACAGACTTGGATTTGGATTCGAATCAGCTGCAAGGCGGGTTGCCTTCGAGTTTTGCGGGTTCGAATATTAACAAACTTAGGTTGGAGAACAATGGGAATCTTAATGGCACTCTTGATGTGTTACAGAACATGACCGAGCTGAATGAAGTTCATTTAAATAGGAATCAGTTCACAGGTCCTTTGCCAGATTTTTCGAATGTCAAGAACTTAACATTCTTTGACGTGAGGGATAATCAGCTCACTGGTGTTATTCCTTCTTCATTGGTGAATCAACCCTCCCTAGCCAATGTTACGTTGAGCAACAATTTGTTTCAGGGCCCCAAGCCCAAGTTCAAGAGTGGTGTTGGGTTGGATATGGATATAGGGAATATGTTTTGCAATCCTAATGTCGGTCAAGATTGCGATCCCCGTGTTGATATATTGCTTTCGATTGCCAGAGCCATGGGTTACCCTACTACGTTTGCACAAAATTGGATGGGGAATGATCCTTGTGCTGCCAATGGTGGTTCTTGGCTTGGCTTGACATGTTCAGGAGGGAACATTACCAGAATCAGCTTTGGTAAAAGGGGTCTGGCAGGTACAATATCCTCTAACTTTTCCTTGCTTACATCGTTGACAGATTTGAGACTCAATGATAATTTCTTGACTGGGACTATACCTGTGGAGCTTACGAAACTTCCAAACCTTAAGAATGTAGATTTCTCAAACAATAGACTCTATGGTAAAATACCACAGTTTCGAGATGGTGTTGTTGTGAAATTAGAGGGAAACCCTGATATAGGTAAGGACCAGCCTAGCACACCTCCGGGTCAGCCTAGCACACCTCCGAGTCCTAACGGTGGAGGTGACAAGAAATCCAAGACTGGTGTGATTATTGGGGTTGTTGTCGGATGTATTGTTGGATTGGTTCTAGTTGGGGTTCTCGTCTTTTGTATGCTGAAGAAAAAACAGAGACGTTCTGGTAAAGTGCAAAGTCCAAATTCATTGGTTATACACCCTCGTCATTCTGGTGATCAAAATGCTGTCAAAATTTCAGTTGCTAATAGGTTAAATAGCAGTGGAAATGAGTCTTACAATAGTCCCCCAAATAATGGACCTAATGACATCCATGTTGAGGCTGGAAATATGATCATTTCTATCCAAGTTTTGAGGAGTGTGACCAATAACTTCAATGAAGATAAGATATTGGGAAAAGGTGGGTTTGGAACTGTGTATGGAGGAGAATTGCATGATGGAACGAAAATTGCAGTGAAGAGAATGGAATCTGGTGTGGTAGCTGAGAAAGGCCTGCATGAGTTCAAGTCTGAGATTGCAGTTCTTACTAAGGTCCGACATCGTCACTTAGTGGGACTTCTTGGATATTGTTTGGATGGGAATGAGAGGCTTCTTGTCTATGAGCACATGCCGCAGGGGACTCTTAGTAGACATTTGTTCAACTGGAAAGAAGAAGGGCTGGAGCCACTTGAATGGACTAGAAGACTGACCATTGCCTTGGATGTTGCGAGAGGGGTTGAATACCTGCACGGTTTGGCCAATGAAATTTTCATTCATAGAGACCTTAAGCCTTCTAATATATTACTTGGAGATGATATGCGGGCGAAAGTGGCAGACTTTGGATTGGTTCGTCTTGCTCCAGCAGGGAAAGCCTCTATAGAGACGAGACTAGCAGGAACTTTTGGCTATTTGGCTCCAGAATATGCAGCAACCGGACGGATGACACTCAAGGTAGATGTGTACAGCTTTGGTGTAATATTAATGGAGTTGATCACTGGTAGAAAGGCAATTGACGAAAGCCAGCCTGAGGAGAGTTGTCACCTAGTGACATGGTTTCGTAGAAAGCTCATTAAAACAGATGCACTCCCTGAGATTGTTGATCCAACCATTGATGTCAATGAGGAAACTCTTTCTAGTATAAGCACGGTGGCTGAGCTTGCCGGTCATTGCAGTGCAAGGGAGCCGTACCAAAGGCCTGACATGGGTCATGCAGTCAATGTACTTTCATCACTTGTTGAGCAGTGGAAACCCTCTAAACAAGAAGATTTTGATGACATGGATGCAATCAACTTTGATGTGCCACTAAAAGAAGCAGTAAAGAGGTGGCAGGCTGCTGAGGGCAAAAGCAACATCGATGACTCTTCATCTTCATCAATATTTCCTAGCGGGGATACTACCCAGACCAGCATACCTAACCGGCCTTCTGGATTTGCTGAGTCTTTTACATCATCAGATGGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

931

Amino Acids

101.05

Weight (kDa)

6.17

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	576 - 849	8.3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	579 - 796	1.6e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01820
fragaria_vesca	FvH4_4g33170 FvH4_4g33170 FvH4_4g33171
malus_domestica	MD13G1017200.v1.1 MD16G1015000.v1.1 MD16G1015200.v1.1
prunus_persica	Prupe.1G336300_v2.0.a1 Prupe.1G336300_v2.0.a1
pyrus_communis	pycom13g01480 pycom16g01400
rosa_chinensis	RchiOBHm_Chr4g0442211 RchiOBHm_Chr4g0442221 RchiOBHm_Chr4g0442231
rosa_laevigata	RLG00000006022 RLG00000006023
rosa_multiflora	Rmu_co8222306.1_g000001 Rmu_sc0000124.1_g000060 Rmu_sc0000124.1_g000062 Rmu_sc0010284.1_g000002 Rmu_sc0010284.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383140 Rroxscaffold_5G00383150
rosa_rugosa	Rorug04G0339700 Rorug04G0339800 Rorug04G0339900
rosa_samantha	Rh4AG391300 Rh4AG391400 Rh4BG405000 Rh4BG405100 Rh4CG420100 Rh4CG420200 Rh4DG398100 Rh4DG398200 Rh4DG398300
rosa_wichuraiana	Rw4G033820 Rw4G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1124, 2085
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	2 cut(s)	126, 1649
AccI	GTMKAC	1 cut(s)	1981
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	9 cut(s)	239, 280, 374, 594, 614, 1964, 2152, 2718, 2791
AclWI	GGATC	3 cut(s)	956, 1037, 2426
AcoI	YGGCCR	1 cut(s)	2088
AcsI	RAATTY	3 cut(s)	1537, 1587, 2097
AcuI	CTGAAG	3 cut(s)	314, 389, 1517
AdeI	CACNNNGTG	3 cut(s)	44, 1903, 2377
AfaI	GTAC	4 cut(s)	1138, 2294, 2519, 2553
AfiI	CCNNNNNNNGG	9 cut(s)	67, 126, 947, 1337, 1397, 1649, 1672, 2359, 2534
AflII	CTTAAG	2 cut(s)	1244, 2117
AflIII	ACRYGT	1 cut(s)	1082
AgsI	TTSAA	6 cut(s)	892, 1729, 1858, 1993, 2024, 2072
AjiI	CACGTC	2 cut(s)	255, 781
AjnI	CCWGG	1 cut(s)	152
AjuI	GAANNNNNNNTTGG	4 cut(s)	872, 904, 2084, 2116
Alw21I	GWGCWC	1 cut(s)	1959
Alw26I	GTCTC	8 cut(s)	169, 291, 314, 1177, 1504, 2106, 2207, 2212
AlwI	GGATC	3 cut(s)	956, 1037, 2426
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	2 cut(s)	304, 472
Aor13HI	TCCGGA	1 cut(s)	451
ApaI	GGGCCC	1 cut(s)	878
ApeKI	GCWGC	6 cut(s)	55, 147, 586, 1052, 2258, 2663
ApoI	RAATTY	3 cut(s)	1537, 1587, 2097
AseI	ATTAAT	1 cut(s)	2312
Asp700I	GAANNNNTTC	3 cut(s)	356, 431, 725
AspS9I	GGNCC	8 cut(s)	70, 156, 734, 874, 875, 1345, 1652, 1885
AsuC2I	CCSGG	2 cut(s)	524, 1365
AsuHPI	GGTGA	6 cut(s)	283, 389, 835, 1415, 1580, 2363
AsuII	TTCGAA	4 cut(s)	244, 578, 620, 752
AvaI	CYCGRG	2 cut(s)	304, 472
AvaII	GGWCC	5 cut(s)	70, 734, 1345, 1652, 1885
AxyI	CCTNAGG	1 cut(s)	2358
BaeGI	GKGCMC	1 cut(s)	878
BalI	TGGCCA	1 cut(s)	2090
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	878
BauI	CACGAG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	2041
Bbv12I	GWGCWC	1 cut(s)	1959
BbvCI	CCTCAGC	1 cut(s)	2667
BbvI	GCAGC	6 cut(s)	67, 134, 573, 1039, 2270, 2650
BccI	CCATC	5 cut(s)	1027, 1295, 1784, 1922, 2780
BceAI	ACGGC	1 cut(s)	2500
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BciT130I	CCWGG	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	2716
BclI	TGATCA	3 cut(s)	1570, 1686, 2322
BcnI	CCSGG	2 cut(s)	524, 1365
BcoDI	GTCTC	8 cut(s)	169, 291, 314, 1177, 1504, 2106, 2207, 2212
BfmI	CTRYAG	1 cut(s)	2208
BfrI	CTTAAG	2 cut(s)	1244, 2117
BfuAI	ACCTGC	2 cut(s)	1124, 2085
BfuI	GTATCC	1 cut(s)	2716
BisI	GCNGC	7 cut(s)	56, 148, 587, 1053, 1964, 2259, 2664
BlpI	GCTNAGC	1 cut(s)	2484
BlsI	GCNGC	7 cut(s)	57, 149, 588, 1054, 1965, 2260, 2665
Bme1390I	CCNGG	3 cut(s)	154, 524, 1365
Bme18I	GGWCC	5 cut(s)	70, 734, 1345, 1652, 1885
BmeT110I	CYCGRG	2 cut(s)	304, 472
BmgBI	CACGTC	2 cut(s)	255, 781
BmgT120I	GGNCC	8 cut(s)	70, 156, 734, 874, 875, 1345, 1652, 1885
BmiI	GGNNCC	7 cut(s)	139, 502, 876, 877, 2016, 2247, 2514
BmrFI	CCNGG	3 cut(s)	154, 524, 1365
BmrI	ACTGGG	1 cut(s)	1215
BmsI	GCATC	2 cut(s)	2401, 2602
BmuI	ACTGGG	1 cut(s)	1215
BoxI	GACNNNNGTC	1 cut(s)	2535
BpiI	GAAGAC	1 cut(s)	2041
BpmI	CTGGAG	3 cut(s)	2033, 2175, 2232
Bpu10I	CCTNAGC	1 cut(s)	2667
Bpu1102I	GCTNAGC	1 cut(s)	2484
Bpu14I	TTCGAA	4 cut(s)	244, 578, 620, 752
BpuEI	CTTGAG	1 cut(s)	2264
BpuMI	CCSGG	2 cut(s)	524, 1365
Bsa29I	ATCGAT	1 cut(s)	2685
BsaBI	GATNNNNATC	2 cut(s)	579, 960
BsaI	GGTCTC	1 cut(s)	2106
BsaJI	CCNNGG	6 cut(s)	81, 153, 319, 440, 999, 2049
BsaWI	WCCGGW	3 cut(s)	293, 451, 2264
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	9 cut(s)	67, 126, 947, 1337, 1397, 1649, 1672, 2359, 2534
Bse118I	RCCGGY	4 cut(s)	134, 191, 2492, 2748
Bse1I	ACTGG	5 cut(s)	805, 1210, 1426, 2000, 2332
Bse21I	CCTNAGG	1 cut(s)	2358
Bse3DI	GCAATG	2 cut(s)	2043, 2497
Bse8I	GATNNNNATC	2 cut(s)	579, 960
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	2685
BseDI	CCNNGG	6 cut(s)	81, 153, 319, 440, 999, 2049
BseGI	GGATG	8 cut(s)	107, 1038, 1454, 1662, 1933, 2059, 2277, 2617
BseJI	GATNNNNATC	2 cut(s)	579, 960
BseLI	CCNNNNNNNGG	9 cut(s)	67, 126, 947, 1337, 1397, 1649, 1672, 2359, 2534
BseMI	GCAATG	2 cut(s)	2043, 2497
BseMII	CTCAG	8 cut(s)	244, 1827, 1854, 2349, 2412, 2475, 2658, 2757
BseNI	ACTGG	5 cut(s)	805, 1210, 1426, 2000, 2332
BseRI	GAGGAG	3 cut(s)	1723, 1791, 2375
BseSI	GKGCMC	1 cut(s)	878
BseXI	GCAGC	6 cut(s)	67, 134, 573, 1039, 2270, 2650
BsgI	GTGCAG	3 cut(s)	74, 133, 2063
BshNI	GGYRCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	2685
BsiHKAI	GWGCWC	1 cut(s)	1959
BsiHKCI	CYCGRG	2 cut(s)	304, 472
BslFI	GGGAC	4 cut(s)	1222, 1623, 1920, 1984
BslI	CCNNNNNNNGG	9 cut(s)	67, 126, 947, 1337, 1397, 1649, 1672, 2359, 2534
BsmAI	GTCTC	8 cut(s)	169, 291, 314, 1177, 1504, 2106, 2207, 2212
BsmBI	CGTCTC	2 cut(s)	1504, 2207
BsmFI	GGGAC	4 cut(s)	1222, 1623, 1920, 1984
Bso31I	GGTCTC	1 cut(s)	2106
BsoBI	CYCGRG	2 cut(s)	304, 472
Bsp119I	TTCGAA	4 cut(s)	244, 578, 620, 752
Bsp120I	GGGCCC	1 cut(s)	874
Bsp1286I	GDGCHC	2 cut(s)	878, 1959
Bsp13I	TCCGGA	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	2292
Bsp143I	GATC	6 cut(s)	961, 1042, 1570, 1686, 2322, 2431
Bsp1720I	GCTNAGC	1 cut(s)	2484
Bsp19I	CCATGG	2 cut(s)	81, 999
BspACI	CCGC	9 cut(s)	239, 280, 374, 594, 614, 1964, 2152, 2718, 2791
BspCNI	CTCAG	8 cut(s)	243, 1828, 1855, 2350, 2413, 2476, 2659, 2758
BspDI	ATCGAT	1 cut(s)	2685
BspEI	TCCGGA	1 cut(s)	451
BspLI	GGNNCC	7 cut(s)	139, 502, 876, 877, 2016, 2247, 2514
BspMI	ACCTGC	2 cut(s)	1124, 2085
BspPI	GGATC	3 cut(s)	956, 1037, 2426
BspT104I	TTCGAA	4 cut(s)	244, 578, 620, 752
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	2 cut(s)	1244, 2117
BspTNI	GGTCTC	1 cut(s)	2106
BsrDI	GCAATG	2 cut(s)	2043, 2497
BsrFI	RCCGGY	4 cut(s)	134, 191, 2492, 2748
BsrGI	TGTACA	1 cut(s)	2292
BsrI	ACTGG	5 cut(s)	805, 1210, 1426, 2000, 2332
BssAI	RCCGGY	4 cut(s)	134, 191, 2492, 2748
BssECI	CCNNGG	6 cut(s)	81, 153, 319, 440, 999, 2049
BssMI	GATC	6 cut(s)	961, 1042, 1570, 1686, 2322, 2431
BssSI	CACGAG	1 cut(s)	166
BssT1I	CCWWGG	3 cut(s)	81, 999, 2049
Bst2BI	CACGAG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	7 cut(s)	42, 356, 1293, 1397, 1768, 2084, 2479
Bst6I	CTCTTC	2 cut(s)	1805, 2698
BstAFI	CTTAAG	2 cut(s)	1244, 2117
BstAPI	GCANNNNNTGC	3 cut(s)	144, 268, 277
BstAUI	TGTACA	1 cut(s)	2292
BstBI	TTCGAA	4 cut(s)	244, 578, 620, 752
BstC8I	GCNNGC	7 cut(s)	78, 136, 1847, 2154, 2354, 2490, 2661
BstDSI	CCRYGG	3 cut(s)	81, 440, 999
BstEII	GGTNACC	2 cut(s)	187, 1004
BstENI	CCTNNNNNAGG	1 cut(s)	1335
BstF5I	GGATG	8 cut(s)	107, 1038, 1454, 1662, 1933, 2059, 2277, 2617
BstKTI	GATC	6 cut(s)	964, 1045, 1573, 1689, 2325, 2434
BstMAI	GTCTC	8 cut(s)	169, 291, 314, 1177, 1504, 2106, 2207, 2212
BstMBI	GATC	6 cut(s)	961, 1042, 1570, 1686, 2322, 2431
BstMWI	GCNNNNNNNGC	9 cut(s)	144, 177, 268, 277, 500, 1963, 2162, 2201, 2489
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	2 cut(s)	1086, 1963
BstPAI	GACNNNNGTC	1 cut(s)	2535
BstPI	GGTNACC	2 cut(s)	187, 1004
BstSCI	CCNGG	3 cut(s)	152, 522, 1363
BstSFI	CTRYAG	1 cut(s)	2208
BstSLI	GKGCMC	1 cut(s)	878
BstV1I	GCAGC	6 cut(s)	67, 134, 573, 1039, 2270, 2650
BstV2I	GAAGAC	1 cut(s)	2041
BstXI	CCANNNNNNTGG	3 cut(s)	1000, 2025, 2050
Bsu15I	ATCGAT	1 cut(s)	2685
Bsu36I	CCTNAGG	1 cut(s)	2358
BsuI	GTATCC	1 cut(s)	2716
BsuTUI	ATCGAT	1 cut(s)	2685
BtgI	CCRYGG	3 cut(s)	81, 440, 999
BtrI	CACGTC	2 cut(s)	255, 781
BtsCI	GGATG	8 cut(s)	107, 1038, 1454, 1662, 1933, 2059, 2277, 2617
BtsI	GCAGTG	4 cut(s)	1621, 1812, 2509, 2579
BtsIMutI	CAGTG	7 cut(s)	47, 798, 1621, 1812, 2325, 2509, 2579
BveI	ACCTGC	2 cut(s)	1124, 2085
Cac8I	GCNNGC	7 cut(s)	78, 136, 1847, 2154, 2354, 2490, 2661
CaiI	CAGNNNCTG	1 cut(s)	268
Cfr10I	RCCGGY	4 cut(s)	134, 191, 2492, 2748
Cfr13I	GGNCC	8 cut(s)	70, 156, 734, 874, 875, 1345, 1652, 1885
ClaI	ATCGAT	1 cut(s)	2685
Csp6I	GTAC	4 cut(s)	1137, 2293, 2518, 2552
CviQI	GTAC	4 cut(s)	1137, 2293, 2518, 2552
DpnI	GATC	6 cut(s)	963, 1044, 1572, 1688, 2324, 2433
DpnII	GATC	6 cut(s)	961, 1042, 1570, 1686, 2322, 2431
DraI	TTTAAA	1 cut(s)	714
DraIII	CACNNNGTG	3 cut(s)	44, 1903, 2377
EaeI	YGGCCR	1 cut(s)	2088
Eam1104I	CTCTTC	2 cut(s)	1805, 2698
EarI	CTCTTC	2 cut(s)	1805, 2698
Eco130I	CCWWGG	3 cut(s)	81, 999, 2049
Eco147I	AGGCCT	4 cut(s)	318, 470, 1845, 2527
Eco24I	GRGCYC	1 cut(s)	878
Eco31I	GGTCTC	1 cut(s)	2106
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	5 cut(s)	70, 734, 1345, 1652, 1885
Eco57I	CTGAAG	3 cut(s)	314, 389, 1517
Eco81I	CCTNAGG	1 cut(s)	2358
Eco88I	CYCGRG	2 cut(s)	304, 472
Eco91I	GGTNACC	2 cut(s)	187, 1004
EcoNI	CCTNNNNNAGG	1 cut(s)	1335
EcoO109I	RGGNCCY	3 cut(s)	734, 874, 875
EcoO65I	GGTNACC	2 cut(s)	187, 1004
EcoRII	CCWGG	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	3 cut(s)	81, 999, 2049
EcoT38I	GRGCYC	1 cut(s)	878
ErhI	CCWWGG	3 cut(s)	81, 999, 2049
Esp3I	CGTCTC	2 cut(s)	1504, 2207
FaqI	GGGAC	4 cut(s)	1222, 1623, 1920, 1984
FauI	CCCGC	5 cut(s)	367, 587, 607, 2145, 2711
FbaI	TGATCA	3 cut(s)	1570, 1686, 2322
FblI	GTMKAC	1 cut(s)	1981
Fnu4HI	GCNGC	7 cut(s)	56, 148, 587, 1053, 1964, 2259, 2664
FokI	GGATG	8 cut(s)	94, 1045, 1461, 1649, 1940, 2066, 2284, 2624
FriOI	GRGCYC	1 cut(s)	878
Fsp4HI	GCNGC	7 cut(s)	56, 148, 587, 1053, 1964, 2259, 2664
GluI	GCNGC	7 cut(s)	56, 148, 587, 1053, 1964, 2259, 2664
GsuI	CTGGAG	3 cut(s)	2033, 2175, 2232
HincII	GTYRAC	1 cut(s)	1173
HindII	GTYRAC	1 cut(s)	1173
HindIII	AAGCTT	1 cut(s)	100
HphI	GGTGA	6 cut(s)	283, 389, 835, 1415, 1580, 2363
Hpy166II	GTNNAC	6 cut(s)	227, 340, 729, 1173, 1982, 2293
Hpy188I	TCNGA	9 cut(s)	219, 333, 426, 480, 1386, 1448, 1864, 1889, 2785
Hpy8I	GTNNAC	6 cut(s)	227, 340, 729, 1173, 1982, 2293
Hpy99I	CGWCG	1 cut(s)	259
HpyCH4III	ACNGT	7 cut(s)	42, 356, 1293, 1397, 1768, 2084, 2479
HpyCH4IV	ACGT	5 cut(s)	254, 780, 851, 1016, 1513
HpyF10VI	GCNNNNNNNGC	9 cut(s)	144, 177, 268, 277, 500, 1963, 2162, 2201, 2489
HpySE526I	ACGT	5 cut(s)	254, 780, 851, 1016, 1513
Kpn2I	TCCGGA	1 cut(s)	451
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Ksp22I	TGATCA	3 cut(s)	1570, 1686, 2322
Kzo9I	GATC	6 cut(s)	961, 1042, 1570, 1686, 2322, 2431
LmnI	GCTCC	6 cut(s)	500, 1222, 2014, 2194, 2251, 2512
Lsp1109I	GCAGC	6 cut(s)	67, 134, 573, 1039, 2270, 2650
LweI	GCATC	2 cut(s)	2401, 2602
MaeII	ACGT	5 cut(s)	254, 780, 851, 1016, 1513
MalI	GATC	6 cut(s)	963, 1044, 1572, 1688, 2324, 2433
MboI	GATC	6 cut(s)	961, 1042, 1570, 1686, 2322, 2431
MfeI	CAATTG	1 cut(s)	2340
MhlI	GDGCHC	2 cut(s)	878, 1959
MlsI	TGGCCA	1 cut(s)	2090
MluNI	TGGCCA	1 cut(s)	2090
MmeI	TCCRAC	6 cut(s)	621, 888, 1426, 1438, 1912, 2459
Mox20I	TGGCCA	1 cut(s)	2090
MroI	TCCGGA	1 cut(s)	451
MroNI	GCCGGC	1 cut(s)	134
MroXI	GAANNNNTTC	3 cut(s)	356, 431, 725
MscI	TGGCCA	1 cut(s)	2090
MslI	CAYNNNNRTG	3 cut(s)	1566, 2023, 2502
Msp20I	TGGCCA	1 cut(s)	2090
MspA1I	CMGCKG	1 cut(s)	586
MspCI	CTTAAG	2 cut(s)	1244, 2117
MspR9I	CCNGG	3 cut(s)	154, 524, 1365
MunI	CAATTG	1 cut(s)	2340
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	9 cut(s)	144, 177, 268, 277, 500, 1963, 2162, 2201, 2489
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	2 cut(s)	524, 1365
NcoI	CCATGG	2 cut(s)	81, 999
NdeII	GATC	6 cut(s)	961, 1042, 1570, 1686, 2322, 2431
NgoMIV	GCCGGC	1 cut(s)	134
NlaIV	GGNNCC	7 cut(s)	139, 502, 876, 877, 2016, 2247, 2514
NmeAIII	GCCGAG	1 cut(s)	576
NmuCI	GTSAC	6 cut(s)	36, 1403, 1714, 1895, 2369, 2377
NspI	RCATGY	2 cut(s)	1086, 1963
NspV	TTCGAA	4 cut(s)	244, 578, 620, 752
PaeR7I	CTCGAG	1 cut(s)	472
PceI	AGGCCT	4 cut(s)	318, 470, 1845, 2527
PciI	ACATGT	1 cut(s)	1082
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	136
PdmI	GAANNNNTTC	3 cut(s)	356, 431, 725
PfeI	GAWTC	9 cut(s)	427, 448, 575, 580, 655, 721, 826, 1107, 1820
PflFI	GACNNNGTC	1 cut(s)	1893
PflMI	CCANNNNNTGG	2 cut(s)	126, 1649
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	7 cut(s)	57, 149, 588, 1054, 1965, 2260, 2665
PpuMI	RGGWCCY	1 cut(s)	734
PscI	ACATGT	1 cut(s)	1082
PshAI	GACNNNNGTC	1 cut(s)	2535
PshBI	ATTAAT	1 cut(s)	2312
Psp5II	RGGWCCY	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	152
PspEI	GGTNACC	2 cut(s)	187, 1004
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	7 cut(s)	139, 502, 876, 877, 2016, 2247, 2514
PspOMI	GGGCCC	1 cut(s)	874
PspPI	GGNCC	8 cut(s)	70, 156, 734, 874, 875, 1345, 1652, 1885
PspPPI	RGGWCCY	1 cut(s)	734
PspXI	VCTCGAGB	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	1893
PvuII	CAGCTG	1 cut(s)	586
RsaI	GTAC	4 cut(s)	1138, 2294, 2519, 2553
RsaNI	GTAC	4 cut(s)	1137, 2293, 2518, 2552
RseI	CAYNNNNRTG	3 cut(s)	1566, 2023, 2502
SatI	GCNGC	7 cut(s)	56, 148, 587, 1053, 1964, 2259, 2664
Sau3AI	GATC	6 cut(s)	961, 1042, 1570, 1686, 2322, 2431
Sau96I	GGNCC	8 cut(s)	70, 156, 734, 874, 875, 1345, 1652, 1885
ScrFI	CCNGG	3 cut(s)	154, 524, 1365
SduI	GDGCHC	2 cut(s)	878, 1959
SfaNI	GCATC	2 cut(s)	2401, 2602
SfcI	CTRYAG	1 cut(s)	2208
Sfr274I	CTCGAG	1 cut(s)	472
SfuI	TTCGAA	4 cut(s)	244, 578, 620, 752
SinI	GGWCC	5 cut(s)	70, 734, 1345, 1652, 1885
SlaI	CTCGAG	1 cut(s)	472
SmiI	ATTTAAAT	1 cut(s)	714
SmiMI	CAYNNNNRTG	3 cut(s)	1566, 2023, 2502
SmlI	CTYRAG	4 cut(s)	472, 1244, 2117, 2279
SmoI	CTYRAG	4 cut(s)	472, 1244, 2117, 2279
SseBI	AGGCCT	4 cut(s)	318, 470, 1845, 2527
SsiI	CCGC	9 cut(s)	239, 280, 374, 594, 614, 1964, 2152, 2718, 2791
SspI	AATATT	3 cut(s)	625, 2310, 2709
StuI	AGGCCT	4 cut(s)	318, 470, 1845, 2527
StyD4I	CCNGG	3 cut(s)	152, 522, 1363
StyI	CCWWGG	3 cut(s)	81, 999, 2049
SwaI	ATTTAAAT	1 cut(s)	714
TaaI	ACNGT	7 cut(s)	42, 356, 1293, 1397, 1768, 2084, 2479
TaiI	ACGT	5 cut(s)	257, 783, 854, 1019, 1516
TaqI	TCGA	9 cut(s)	244, 473, 578, 605, 620, 752, 986, 1297, 2685
TaqII	GACCGA	3 cut(s)	410, 707, 938
TatI	WGTACW	2 cut(s)	2292, 2551
TauI	GCSGC	1 cut(s)	1966
TfiI	GAWTC	9 cut(s)	427, 448, 575, 580, 655, 721, 826, 1107, 1820
TscAI	CASTG	7 cut(s)	47, 805, 1621, 1812, 2332, 2509, 2579
TseFI	GTSAC	6 cut(s)	36, 1403, 1714, 1895, 2369, 2377
TseI	GCWGC	6 cut(s)	55, 147, 586, 1052, 2258, 2663
Tsp45I	GTSAC	6 cut(s)	36, 1403, 1714, 1895, 2369, 2377
TspGWI	ACGGA	1 cut(s)	2284
TspRI	CASTG	7 cut(s)	47, 805, 1621, 1812, 2332, 2509, 2579
Tth111I	GACNNNGTC	1 cut(s)	1893
Van91I	CCANNNNNTGG	2 cut(s)	126, 1649
Vha464I	CTTAAG	2 cut(s)	1244, 2117
VpaK11BI	GGWCC	5 cut(s)	70, 734, 1345, 1652, 1885
VspI	ATTAAT	1 cut(s)	2312
XagI	CCTNNNNNAGG	1 cut(s)	1335
XapI	RAATTY	3 cut(s)	1537, 1587, 2097
XceI	RCATGY	2 cut(s)	1086, 1963
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1673
XhoI	CTCGAG	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	1981
XmnI	GAANNNNTTC	3 cut(s)	356, 431, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.