Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000124.1

Orthogroup ID

OG0003113

Physical Location & Seq

Genomic Coordinates Reverse (-)

259441 .. 260103

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000124.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgggtttctggggttgtgtcttcgttttgctgtcactgtccgcacctgtgcattcccagtcccaaaagctcagcgaggaccagccagccatggaagctattctggaaaacatcagaccaaaaccacccacgaattggtcgtctggctccgattgctgtacctggggggacgtaacgtgcgaaaatggcaaggtggtcaccatcatgatcaaagatcaacatctctccggttctctccgtccagacatcaataagctgacttctttgctgcgtctgcacattatgctcaacaatctcaccggacccttcccaaccctacaaggcttggcagagcttgaggagatttatgccaaccagaacaacttcacttattttccagtagatgatttcttctccggcctcgattcccttcaagaattccacgttgactacaaccccttccaggcgtggcagattccggatagcactaagtttacctccaagctgaccagtttcacagctagagatgcaaacatttccggaaagatcccggaattttttgacagcaacaatatgcctagtttggttaccttggagttggcttataataatctcgaaggtgaattgcctgccagtttttccggttccgggattccagtcccttttgttgaacaacaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

220

Amino Acids

24.49

Weight (kDa)

4.52

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01820
fragaria_vesca	FvH4_4g33170 FvH4_4g33170 FvH4_4g33171
malus_domestica	MD13G1017200.v1.1 MD16G1015000.v1.1 MD16G1015200.v1.1
prunus_persica	Prupe.1G336300_v2.0.a1 Prupe.1G336300_v2.0.a1
pyrus_communis	pycom13g01480 pycom16g01400
rosa_chinensis	RchiOBHm_Chr4g0442211 RchiOBHm_Chr4g0442221 RchiOBHm_Chr4g0442231
rosa_laevigata	RLG00000006022 RLG00000006023
rosa_multiflora	Rmu_co8222306.1_g000001 Rmu_sc0000124.1_g000060 Rmu_sc0000124.1_g000062 Rmu_sc0010284.1_g000002 Rmu_sc0010284.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383140 Rroxscaffold_5G00383150
rosa_rugosa	Rorug04G0339700 Rorug04G0339800 Rorug04G0339900
rosa_samantha	Rh4AG391300 Rh4AG391400 Rh4BG405000 Rh4BG405100 Rh4CG420100 Rh4CG420200 Rh4DG398100 Rh4DG398200 Rh4DG398300
rosa_wichuraiana	Rw4G033820 Rw4G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AccB7I	CCANNNNNTGG	1 cut(s)	135
AccIII	TCCGGA	2 cut(s)	457, 518
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	520
AcsI	RAATTY	2 cut(s)	416, 533
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	3 cut(s)	135, 442, 627
AgsI	TTSAA	2 cut(s)	413, 650
AjnI	CCWGG	2 cut(s)	161, 441
AluBI	AGCT	6 cut(s)	70, 98, 256, 334, 484, 500
AluI	AGCT	6 cut(s)	70, 98, 256, 334, 484, 500
AlwI	GGATC	1 cut(s)	520
Aor13HI	TCCGGA	2 cut(s)	457, 518
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	416, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	2 cut(s)	99, 362
AspS9I	GGNCC	2 cut(s)	79, 302
AsuC2I	CCSGG	2 cut(s)	530, 628
AsuHPI	GGTGA	3 cut(s)	190, 289, 611
AvaII	GGWCC	2 cut(s)	79, 302
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	2 cut(s)	163, 443
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	530, 628
BfaI	CTAG	2 cut(s)	501, 558
BisI	GCNGC	1 cut(s)	269
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	4 cut(s)	163, 443, 530, 628
Bme18I	GGWCC	2 cut(s)	79, 302
BmgT120I	GGNCC	2 cut(s)	79, 302
BmiI	GGNNCC	3 cut(s)	148, 304, 625
BmrFI	CCNGG	4 cut(s)	163, 443, 530, 628
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	13
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	356
BpuMI	CCSGG	2 cut(s)	530, 628
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	90, 162, 570
BsaWI	WCCGGW	5 cut(s)	227, 299, 457, 518, 620
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 442, 627
Bse1I	ACTGG	5 cut(s)	58, 377, 489, 612, 635
Bse8I	GATNNNNATC	1 cut(s)	219
BseAI	TCCGGA	2 cut(s)	457, 518
BseBI	CCWGG	2 cut(s)	163, 443
BseDI	CCNNGG	3 cut(s)	90, 162, 570
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	3 cut(s)	135, 442, 627
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	5 cut(s)	58, 377, 489, 612, 635
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	399
BsiSI	CCGG	8 cut(s)	228, 300, 396, 458, 519, 530, 621, 627
BslFI	GGGAC	3 cut(s)	46, 182, 623
BslI	CCNNNNNNNGG	3 cut(s)	135, 442, 627
BsmFI	GGGAC	3 cut(s)	46, 182, 623
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	399
Bsp13I	TCCGGA	2 cut(s)	457, 518
Bsp143I	GATC	3 cut(s)	207, 214, 525
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	84
BspEI	TCCGGA	2 cut(s)	457, 518
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	3 cut(s)	148, 304, 625
BspPI	GGATC	1 cut(s)	520
BsrI	ACTGG	5 cut(s)	58, 377, 489, 612, 635
BssECI	CCNNGG	3 cut(s)	90, 162, 570
BssMI	GATC	3 cut(s)	207, 214, 525
BssT1I	CCWWGG	2 cut(s)	90, 570
Bst2UI	CCWGG	2 cut(s)	163, 443
Bst4CI	ACNGT	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	87, 609
BstDEI	CTNAG	2 cut(s)	71, 468
BstDSI	CCRYGG	1 cut(s)	90
BstEII	GGTNACC	2 cut(s)	196, 565
BstKTI	GATC	3 cut(s)	210, 217, 528
BstMBI	GATC	3 cut(s)	207, 214, 525
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 153, 186, 274, 283, 506
BstNI	CCWGG	2 cut(s)	163, 443
BstPI	GGTNACC	2 cut(s)	196, 565
BstSCI	CCNGG	4 cut(s)	161, 441, 528, 626
BstV1I	GCAGC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	87, 609
CciI	TCATGA	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	79, 302
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	91, 205
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	2 cut(s)	71, 468
DpnI	GATC	3 cut(s)	209, 216, 527
DpnII	GATC	3 cut(s)	207, 214, 525
Eco130I	CCWWGG	2 cut(s)	90, 570
Eco47I	GGWCC	2 cut(s)	79, 302
Eco91I	GGTNACC	2 cut(s)	196, 565
EcoO65I	GGTNACC	2 cut(s)	196, 565
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	161, 441
EcoT14I	CCWWGG	2 cut(s)	90, 570
ErhI	CCWWGG	2 cut(s)	90, 570
FaeI	CATG	2 cut(s)	94, 208
FaiI	YATR	6 cut(s)	92, 206, 284, 348, 554, 585
FaqI	GGGAC	3 cut(s)	46, 182, 623
FatI	CATG	2 cut(s)	90, 204
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	2 cut(s)	501, 558
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	8 cut(s)	228, 300, 396, 458, 519, 530, 621, 627
HgaI	GACGC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	94, 208
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	3 cut(s)	404, 454, 631
HpaII	CCGG	8 cut(s)	228, 300, 396, 458, 519, 530, 621, 627
HphI	GGTGA	3 cut(s)	190, 289, 611
Hpy166II	GTNNAC	2 cut(s)	427, 474
Hpy188I	TCNGA	2 cut(s)	116, 151
Hpy188III	TCNNGA	7 cut(s)	104, 205, 242, 413, 458, 519, 593
Hpy8I	GTNNAC	2 cut(s)	427, 474
HpyAV	CCTTC	4 cut(s)	316, 419, 448, 590
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	3 cut(s)	171, 176, 423
HpyCH4V	TGCA	3 cut(s)	52, 277, 509
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 153, 186, 274, 283, 506
HpyF3I	CTNAG	2 cut(s)	71, 468
HpySE526I	ACGT	3 cut(s)	171, 176, 423
Hsp92II	CATG	2 cut(s)	94, 208
Kpn2I	TCCGGA	2 cut(s)	457, 518
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	207, 214, 525
LmnI	GCTCC	1 cut(s)	152
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	501, 558
MaeII	ACGT	3 cut(s)	171, 176, 423
MaeIII	GTNAC	4 cut(s)	33, 172, 196, 565
MalI	GATC	3 cut(s)	209, 216, 527
MboI	GATC	3 cut(s)	207, 214, 525
MboII	GAAGA	2 cut(s)	13, 382
MflI	RGATCY	1 cut(s)	525
MluCI	AATT	4 cut(s)	133, 416, 533, 602
MnlI	CCTC	4 cut(s)	70, 331, 410, 487
MroI	TCCGGA	2 cut(s)	457, 518
MroXI	GAANNNNTTC	2 cut(s)	99, 362
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	8 cut(s)	228, 300, 396, 458, 519, 530, 621, 627
MspR9I	CCNGG	4 cut(s)	163, 443, 530, 628
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	2 cut(s)	163, 443
MwoI	GCNNNNNNNGC	6 cut(s)	95, 153, 186, 274, 283, 506
NciI	CCSGG	2 cut(s)	530, 628
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	3 cut(s)	207, 214, 525
NlaIII	CATG	2 cut(s)	94, 208
NlaIV	GGNNCC	3 cut(s)	148, 304, 625
NmuCI	GTSAC	2 cut(s)	33, 196
PagI	TCATGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 177
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	99, 362
PfeI	GAWTC	3 cut(s)	404, 454, 631
PflMI	CCANNNNNTGG	1 cut(s)	135
PfoI	TCCNGGA	2 cut(s)	528, 626
PkrI	GCNGC	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	161, 441
PspEI	GGTNACC	2 cut(s)	196, 565
PspGI	CCWGG	2 cut(s)	161, 441
PspN4I	GGNNCC	3 cut(s)	148, 304, 625
PspPI	GGNCC	2 cut(s)	79, 302
PsuI	RGATCY	1 cut(s)	525
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	203
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	207, 214, 525
Sau96I	GGNCC	2 cut(s)	79, 302
ScrFI	CCNGG	4 cut(s)	163, 443, 530, 628
SfaNI	GCATC	1 cut(s)	496
SinI	GGWCC	2 cut(s)	79, 302
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	4 cut(s)	133, 416, 533, 602
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	2 cut(s)	501, 558
StyD4I	CCNGG	4 cut(s)	161, 441, 528, 626
StyI	CCWWGG	2 cut(s)	90, 570
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	3 cut(s)	174, 179, 426
TaqI	TCGA	2 cut(s)	402, 594
TasI	AATT	4 cut(s)	133, 416, 533, 602
TfiI	GAWTC	3 cut(s)	404, 454, 631
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	33, 196
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	2 cut(s)	33, 196
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	42
Van91I	CCANNNNNTGG	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	79, 302
XapI	RAATTY	2 cut(s)	416, 533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XmnI	GAANNNNTTC	2 cut(s)	99, 362
XspI	CTAG	2 cut(s)	501, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.