Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003113

Physical Location & Seq

Genomic Coordinates Forward (+)

62810467 .. 62818900

Gene Structure 8434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGGGTTTCCGGGGTTGTGTCTTCGTTTTGTTGTCACTGTCCGCACCTGTGCATTCCCAGTCCCAAAAGCTCAGCGAGGACCAGCCAGCCATGGAAGCTATTCTCGAAAACATCAAACCAAAACCACCCACTAATTGGTCGTCTGGCTCTGATTGCTGTACCTGGGGCGACGTAACGTGCGAAAATGGCAAGGTGGTCACCATCATGATCAAAGATCAGCATCTCTCCGGCTCTCTCCATCCAGACATCAATAAGCTGACTTCTTTGCAGCGTCTGCACATTATGCGCAACAATCTCACCGGACCCTTCCCAACCCTACAAGGCTTGGCAGAGCTTGAGGAGATTTATGCCAACCAGAACAACTTCACTTATTTTCCAGTAGATGATTTCTTCTCCGGCCTCGATTCCCTTCAAGAATTCCACGTCGACTACAACCCCTTCCAGGCGTGGCAGATTCCGGATAGCACTAAGTTTGCCTCCAAGCTGACCAGTTTCACAGCTAGTGATGCAAACATTTCCGGACAGATCCCGAAATTTTTTGACAGCAACAATATGCCTAGTTTGGTTACCTTGGAGTTGGCTTATAGTAATCTCGAAGGTGAATTGCCTGCCAGTTTTTCCGGTTCCGGGATTCAGTCCCTTTTGTTGAACAACAACAATAAGCTCAATGGGGCTATCTCTGTGTTACAGAACATGACCAGTTTGACTCGAGTTTGGCTACACGGTAATCAATTTACGGGTCCTTTGCCAGAATTTTCAGAGCTTACCAACTTATTGGATTTGAATTTGGGGCATAACAAGCTCACAGGTATTGTTCCTGCGTCTTTGCAAAACCTCAGTTTGCTTCAGAATGTCAGCTTGTCCAGCAATTTGCTTCAAGGACCTATGCCCAATTTCACCGGTGGTGCTATTAAGCAAGTGGACGTGACATCTAATAACTTTTGCACCAATGATGCTGACATGGGTTACCCTACTGCGTTTGCAGAGAATTGGATAGGGAATGATCCTTGTGGTGGTCGTACTTATTGGACTGGTCTAACATGTTCAGGAAAAGATGACATTACAGTTCTCAATTTTCCCAACATGGGTCTGACGGATAATAGTCTAACCGGTAATATACCCCAAGAGCTCACAAATTTGCACAACCTTGAAGAAATAGATCTCTCAAACAATAAACTTTATGGTAAAGTACCTAGCTTTCGAGAAAATGTGGTGGTTAAGTTAGGAGGAAACCCAGACATAGGAAAGGACCATCCTAGTGGCCCTACTAATGCTGGAGGTAGCAAGAAATCCAAGACTGGTGTGATTAGAAAACACAGTCGTTATAGTAAAGTGCAAAGTCCAAATTCATTGGTTATACATCCTCGTCACTCTGGTGATCAAAATGCTGTCAAAATTACTGTTGCTAACAGGGTTAATGGCATTGGAAGTGAAAATCACAGTAACGGACCTAATGATATTCAAGTTGAGGCTGGAAATATGACAATTTCAATCCAAGTTTTGAGGAGTGTGACCAATGACTTCAATGAAGATAAGATATTGGGAAAAGGTGGGTTTGGAACTGGGTATGAAGGAGAATTGCATGATGGAACGAAAATTGCAGTGAAGAGAATGGAATCCGGAGTGGTAGCTGAGAAAGGCCTGCATGAGTTCAAGTCTGAGATTTCGGTTCTTACTAAGGTCCGGCATCGCCACTTGGTGGGACTTCTTGGATATTGTTCGGATGGGAATGAAAGGCTTCTTGTCTATGAGCACATGCCGCAGGGGACTCTTAGTAGACATTTGTTCAACTGGAAAGAAGAAGGGTTGGAGCCACTTGAATGGACTAGAAGACTAACCATTGCCTTGGATGTTGCGAGGGGTGTTCAATACCTACATGGTTTGGCCAACGAAATCTTCATTCATAGAGACCTTAAACCTTCAAATATTTTACTTGGAGATGATATGCGGGCGAAAGTGGCAGACTTTGGATTGGTTCGTCTTGCTCCAGCAGGGAAAACCTCTATTGAGACAAGACTAGCAGGAACTTTTGGCTATTTGGCTCCAGAATATGCAGTTGTGCATATAGTTTGTTCTACTTGTTTCCTTGTATTGTCAATTACTGAATATTCAAGGCATAAACTCACAATATTTTCATGGTATCAGCAACTGGACGGGTCACGGATGACGCTCAAGGTAGATGTTTACAGCTTCGGAGTAATATTAATGGAGTTGATCACGGGAAGAAAAGCAATTGACGAAAGCCAGCCTGAGGAGAGTTGTCACCTAGTGACATGGTTTCGTAGAAAGCTCATTAAAACAGATGCACTCCCAGAGATGGTTGATCCAAGAATTAATGTCAATGAGGAAACAATTTCTAGTATTAGTACAGTTGCTGAGCTTGCTGGTCATTGCAGCGCAAGGGAGCCGTACCAAAGGCCTGACATAGGTCATGCAGTCAATGTACTTTCATCGCTTGTTGAGCAGTGGAAGCCATCTAAACAAGAAGATTTTGATGAGATGGATGCAATCAACTTCGATGTGCCGTTAAATGAAGCAGTAAAGATGTGGCAGGCTGCTGAGGGAAAAAGCACCACTGATGAATCCTCATCTTCAACAATCTTTCCTAGCGGGGATACCACCCAGACCAGCATTCCTAATCGGCCTTCTGGATTTGCAGAGTCGTTTACATCATCAGATGGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

895

Amino Acids

98.45

Weight (kDa)

5.56

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	508 - 684	3e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	511 - 684	5.9e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01820
fragaria_vesca	FvH4_4g33170 FvH4_4g33170 FvH4_4g33171
malus_domestica	MD13G1017200.v1.1 MD16G1015000.v1.1 MD16G1015200.v1.1
prunus_persica	Prupe.1G336300_v2.0.a1 Prupe.1G336300_v2.0.a1
pyrus_communis	pycom13g01480 pycom16g01400
rosa_chinensis	RchiOBHm_Chr4g0442211 RchiOBHm_Chr4g0442221 RchiOBHm_Chr4g0442231
rosa_laevigata	RLG00000006022 RLG00000006023
rosa_multiflora	Rmu_co8222306.1_g000001 Rmu_sc0000124.1_g000060 Rmu_sc0000124.1_g000062 Rmu_sc0010284.1_g000002 Rmu_sc0010284.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383140 Rroxscaffold_5G00383150
rosa_rugosa	Rorug04G0339700 Rorug04G0339800 Rorug04G0339900
rosa_samantha	Rh4AG391300 Rh4AG391400 Rh4BG405000 Rh4BG405100 Rh4CG420100 Rh4CG420200 Rh4DG398100 Rh4DG398200 Rh4DG398300
rosa_wichuraiana	Rw4G033820 Rw4G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	287
AccB7I	CCANNNNNTGG	2 cut(s)	135, 1699
AccI	GTMKAC	2 cut(s)	426, 1777
AccIII	TCCGGA	3 cut(s)	457, 518, 1619
AciI	CCGC	5 cut(s)	42, 1760, 1948, 2610, 2683
AclWI	GGATC	3 cut(s)	520, 998, 2318
AcoI	YGGCCR	1 cut(s)	1884
AcsI	RAATTY	6 cut(s)	416, 533, 752, 784, 1135, 1345
AcuI	CTGAAG	1 cut(s)	830
AdeI	CACNNNGTG	2 cut(s)	1699, 2269
AfaI	GTAC	6 cut(s)	160, 1021, 1191, 2368, 2411, 2445
AflIII	ACRYGT	1 cut(s)	1040
AgeI	ACCGGT	2 cut(s)	899, 1109
AjiI	CACGTC	2 cut(s)	424, 925
AjnI	CCWGG	2 cut(s)	161, 441
AjuI	GAANNNNNNNTTGG	2 cut(s)	1880, 1912
AleI	CACNNNNGTG	1 cut(s)	1374
Alw21I	GWGCWC	2 cut(s)	1131, 1755
Alw26I	GTCTC	2 cut(s)	1902, 2003
AlwI	GGATC	3 cut(s)	520, 998, 2318
AlwNI	CAGNNNCTG	3 cut(s)	274, 2149, 2375
Ama87I	CYCGRG	1 cut(s)	708
Aor13HI	TCCGGA	3 cut(s)	457, 518, 1619
AoxI	GGCC	6 cut(s)	397, 1261, 1639, 1884, 2417, 2642
ApeKI	GCWGC	3 cut(s)	268, 2394, 2555
ApoI	RAATTY	6 cut(s)	416, 533, 752, 784, 1135, 1345
AseI	ATTAAT	2 cut(s)	2204, 2334
AsiGI	ACCGGT	2 cut(s)	899, 1109
Asp700I	GAANNNNTTC	3 cut(s)	99, 362, 1737
AspLEI	GCGC	2 cut(s)	288, 2399
AspS9I	GGNCC	8 cut(s)	79, 302, 740, 881, 1249, 1262, 1448, 1681
AsuC2I	CCSGG	2 cut(s)	11, 628
AsuHPI	GGTGA	6 cut(s)	190, 289, 611, 889, 1388, 2255
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	7 cut(s)	79, 302, 740, 881, 1249, 1448, 1681
AxyI	CCTNAGG	1 cut(s)	2250
BalI	TGGCCA	1 cut(s)	1886
BanII	GRGCYC	1 cut(s)	1131
BbsI	GAAGAC	2 cut(s)	13, 1837
Bbv12I	GWGCWC	2 cut(s)	1131, 1755
BbvCI	CCTCAGC	1 cut(s)	2559
BbvI	GCAGC	3 cut(s)	280, 2406, 2542
BccI	CCATC	9 cut(s)	209, 246, 1260, 1580, 1718, 2311, 2482, 2494, 2672
BceAI	ACGGC	2 cut(s)	2392, 2509
BciT130I	CCWGG	2 cut(s)	163, 443
BciVI	GTATCC	1 cut(s)	2608
BclI	TGATCA	3 cut(s)	207, 1378, 2214
BcnI	CCSGG	2 cut(s)	11, 628
BcoDI	GTCTC	2 cut(s)	1902, 2003
BfaI	CTAG	9 cut(s)	501, 558, 1194, 1257, 1827, 2018, 2267, 2358, 2607
BfuI	GTATCC	1 cut(s)	2608
BglII	AGATCT	1 cut(s)	1159
BisI	GCNGC	4 cut(s)	269, 1760, 2395, 2556
BlpI	GCTNAGC	2 cut(s)	71, 2376
BlsI	GCNGC	4 cut(s)	270, 1761, 2396, 2557
Bme1390I	CCNGG	4 cut(s)	11, 163, 443, 628
Bme18I	GGWCC	7 cut(s)	79, 302, 740, 881, 1249, 1448, 1681
BmeT110I	CYCGRG	1 cut(s)	708
BmgBI	CACGTC	2 cut(s)	424, 925
BmgT120I	GGNCC	8 cut(s)	79, 302, 740, 881, 1249, 1262, 1448, 1681
BmiI	GGNNCC	6 cut(s)	304, 625, 741, 1812, 2043, 2406
BmrFI	CCNGG	4 cut(s)	11, 163, 443, 628
BmrI	ACTGGG	2 cut(s)	52, 1572
BmsI	GCATC	6 cut(s)	229, 496, 943, 1696, 2293, 2494
BmuI	ACTGGG	2 cut(s)	52, 1572
BoxI	GACNNNNGTC	1 cut(s)	2427
BpiI	GAAGAC	2 cut(s)	13, 1837
BpmI	CTGGAG	3 cut(s)	1296, 1971, 2028
Bpu10I	CCTNAGC	1 cut(s)	2559
Bpu1102I	GCTNAGC	2 cut(s)	71, 2376
BpuEI	CTTGAG	2 cut(s)	356, 2156
BpuMI	CCSGG	2 cut(s)	11, 628
BsaBI	GATNNNNATC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	1902
BsaJI	CCNNGG	5 cut(s)	10, 90, 162, 570, 1845
BsaWI	WCCGGW	7 cut(s)	299, 457, 518, 620, 899, 1109, 1619
Bse118I	RCCGGY	2 cut(s)	899, 1109
Bse21I	CCTNAGG	1 cut(s)	2250
Bse3DI	GCAATG	2 cut(s)	1839, 2389
Bse8I	GATNNNNATC	1 cut(s)	219
BseAI	TCCGGA	3 cut(s)	457, 518, 1619
BseBI	CCWGG	2 cut(s)	163, 443
BseDI	CCNNGG	5 cut(s)	10, 90, 162, 570, 1845
BseGI	GGATG	7 cut(s)	238, 1252, 1360, 1729, 1855, 2169, 2509
BseJI	GATNNNNATC	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	1839, 2389
BseMII	CTCAG	7 cut(s)	85, 850, 1623, 1650, 2241, 2367, 2550
BseRI	GAGGAG	3 cut(s)	353, 1519, 2267
BseXI	GCAGC	3 cut(s)	280, 2406, 2542
BsgI	GTGCAG	1 cut(s)	260
BshFI	GGCC	6 cut(s)	399, 1263, 1641, 1886, 2419, 2644
BshTI	ACCGGT	2 cut(s)	899, 1109
BsiHKAI	GWGCWC	2 cut(s)	1131, 1755
BsiHKCI	CYCGRG	1 cut(s)	708
BslFI	GGGAC	4 cut(s)	46, 622, 1716, 1780
BsmAI	GTCTC	2 cut(s)	1902, 2003
BsmFI	GGGAC	4 cut(s)	46, 622, 1716, 1780
BsmI	GAATGC	2 cut(s)	52, 2631
BsnI	GGCC	6 cut(s)	399, 1263, 1641, 1886, 2419, 2644
Bso31I	GGTCTC	1 cut(s)	1902
BsoBI	CYCGRG	1 cut(s)	708
Bsp1286I	GDGCHC	2 cut(s)	1131, 1755
Bsp13I	TCCGGA	3 cut(s)	457, 518, 1619
Bsp143I	GATC	8 cut(s)	207, 214, 525, 1003, 1159, 1378, 2214, 2323
Bsp1720I	GCTNAGC	2 cut(s)	71, 2376
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	5 cut(s)	42, 1760, 1948, 2610, 2683
BspANI	GGCC	6 cut(s)	399, 1263, 1641, 1886, 2419, 2644
BspCNI	CTCAG	7 cut(s)	84, 849, 1624, 1651, 2242, 2368, 2551
BspEI	TCCGGA	3 cut(s)	457, 518, 1619
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	6 cut(s)	304, 625, 741, 1812, 2043, 2406
BspPI	GGATC	3 cut(s)	520, 998, 2318
BspTNI	GGTCTC	1 cut(s)	1902
BsrDI	GCAATG	2 cut(s)	1839, 2389
BsrFI	RCCGGY	2 cut(s)	899, 1109
BssAI	RCCGGY	2 cut(s)	899, 1109
BssECI	CCNNGG	5 cut(s)	10, 90, 162, 570, 1845
BssMI	GATC	8 cut(s)	207, 214, 525, 1003, 1159, 1378, 2214, 2323
BssT1I	CCWWGG	3 cut(s)	90, 570, 1845
Bst2UI	CCWGG	2 cut(s)	163, 443
Bst4CI	ACNGT	7 cut(s)	39, 725, 1066, 1319, 1402, 1442, 2371
Bst6I	CTCTTC	1 cut(s)	1601
BstAPI	GCANNNNNTGC	2 cut(s)	274, 283
BstC8I	GCNNGC	7 cut(s)	87, 609, 1643, 1950, 2246, 2382, 2553
BstDSI	CCRYGG	1 cut(s)	90
BstEII	GGTNACC	3 cut(s)	196, 565, 965
BstENI	CCTNNNNNAGG	1 cut(s)	2424
BstF5I	GGATG	7 cut(s)	238, 1252, 1360, 1729, 1855, 2169, 2509
BstHHI	GCGC	2 cut(s)	288, 2399
BstKTI	GATC	8 cut(s)	210, 217, 528, 1006, 1162, 1381, 2217, 2326
BstMAI	GTCTC	2 cut(s)	1902, 2003
BstMBI	GATC	8 cut(s)	207, 214, 525, 1003, 1159, 1378, 2214, 2323
BstNI	CCWGG	2 cut(s)	163, 443
BstNSI	RCATGY	2 cut(s)	1044, 1759
BstPAI	GACNNNNGTC	1 cut(s)	2427
BstPI	GGTNACC	3 cut(s)	196, 565, 965
BstSCI	CCNGG	4 cut(s)	9, 161, 441, 626
BstV1I	GCAGC	3 cut(s)	280, 2406, 2542
BstV2I	GAAGAC	2 cut(s)	13, 1837
BstX2I	RGATCY	2 cut(s)	525, 1159
BstXI	CCANNNNNNTGG	4 cut(s)	775, 1259, 1821, 1846
BstYI	RGATCY	2 cut(s)	525, 1159
Bsu36I	CCTNAGG	1 cut(s)	2250
BsuI	GTATCC	1 cut(s)	2608
BsuRI	GGCC	6 cut(s)	399, 1263, 1641, 1886, 2419, 2644
BtgI	CCRYGG	1 cut(s)	90
BtgZI	GCGATG	2 cut(s)	1673, 2436
BtrI	CACGTC	2 cut(s)	424, 925
BtsCI	GGATG	7 cut(s)	238, 1252, 1360, 1729, 1855, 2169, 2509
BtsI	GCAGTG	2 cut(s)	1608, 2471
BtsIMutI	CAGTG	4 cut(s)	35, 1608, 2471, 2574
Cac8I	GCNNGC	7 cut(s)	87, 609, 1643, 1950, 2246, 2382, 2553
CaiI	CAGNNNCTG	3 cut(s)	274, 2149, 2375
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	2 cut(s)	288, 2399
Cfr10I	RCCGGY	2 cut(s)	899, 1109
Cfr13I	GGNCC	8 cut(s)	79, 302, 740, 881, 1249, 1262, 1448, 1681
CseI	GACGC	3 cut(s)	260, 810, 2176
Csp6I	GTAC	6 cut(s)	159, 1020, 1190, 2367, 2410, 2444
CspAI	ACCGGT	2 cut(s)	899, 1109
CviQI	GTAC	6 cut(s)	159, 1020, 1190, 2367, 2410, 2444
DpnI	GATC	8 cut(s)	209, 216, 527, 1005, 1161, 1380, 2216, 2325
DpnII	GATC	8 cut(s)	207, 214, 525, 1003, 1159, 1378, 2214, 2323
DraIII	CACNNNGTG	2 cut(s)	1699, 2269
EaeI	YGGCCR	1 cut(s)	1884
Eam1104I	CTCTTC	1 cut(s)	1601
EarI	CTCTTC	1 cut(s)	1601
Ecl136II	GAGCTC	1 cut(s)	1129
Eco130I	CCWWGG	3 cut(s)	90, 570, 1845
Eco147I	AGGCCT	2 cut(s)	1641, 2419
Eco24I	GRGCYC	1 cut(s)	1131
Eco31I	GGTCTC	1 cut(s)	1902
Eco47I	GGWCC	7 cut(s)	79, 302, 740, 881, 1249, 1448, 1681
Eco53kI	GAGCTC	1 cut(s)	1129
Eco57I	CTGAAG	1 cut(s)	830
Eco81I	CCTNAGG	1 cut(s)	2250
Eco88I	CYCGRG	1 cut(s)	708
Eco91I	GGTNACC	3 cut(s)	196, 565, 965
EcoICRI	GAGCTC	1 cut(s)	1129
EcoNI	CCTNNNNNAGG	1 cut(s)	2424
EcoO109I	RGGNCCY	2 cut(s)	740, 881
EcoO65I	GGTNACC	3 cut(s)	196, 565, 965
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	161, 441
EcoT14I	CCWWGG	3 cut(s)	90, 570, 1845
EcoT38I	GRGCYC	1 cut(s)	1131
ErhI	CCWWGG	3 cut(s)	90, 570, 1845
FaqI	GGGAC	4 cut(s)	46, 622, 1716, 1780
FauI	CCCGC	2 cut(s)	1941, 2603
FbaI	TGATCA	3 cut(s)	207, 1378, 2214
FblI	GTMKAC	2 cut(s)	426, 1777
Fnu4HI	GCNGC	4 cut(s)	269, 1760, 2395, 2556
FokI	GGATG	7 cut(s)	225, 1239, 1347, 1736, 1862, 2176, 2516
FriOI	GRGCYC	1 cut(s)	1131
Fsp4HI	GCNGC	4 cut(s)	269, 1760, 2395, 2556
FspBI	CTAG	9 cut(s)	501, 558, 1194, 1257, 1827, 2018, 2267, 2358, 2607
FspI	TGCGCA	1 cut(s)	287
GlaI	GCGC	2 cut(s)	287, 2398
GluI	GCNGC	4 cut(s)	269, 1760, 2395, 2556
GsuI	CTGGAG	3 cut(s)	1296, 1971, 2028
HaeIII	GGCC	6 cut(s)	399, 1263, 1641, 1886, 2419, 2644
HgaI	GACGC	3 cut(s)	260, 810, 2176
HhaI	GCGC	2 cut(s)	288, 2399
Hin6I	GCGC	2 cut(s)	286, 2397
HinP1I	GCGC	2 cut(s)	286, 2397
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	8 cut(s)	404, 454, 631, 706, 1616, 1768, 2582, 2660
HphI	GGTGA	6 cut(s)	190, 289, 611, 889, 1388, 2255
Hpy166II	GTNNAC	5 cut(s)	427, 922, 1778, 2185, 2667
Hpy188I	TCNGA	8 cut(s)	151, 760, 849, 1092, 1660, 1723, 2195, 2677
Hpy8I	GTNNAC	5 cut(s)	427, 922, 1778, 2185, 2667
Hpy99I	CGWCG	2 cut(s)	173, 428
HpyAV	CCTTC	8 cut(s)	316, 419, 448, 590, 1565, 1796, 1929, 2655
HpyCH4III	ACNGT	7 cut(s)	39, 725, 1066, 1319, 1402, 1442, 2371
HpyCH4IV	ACGT	4 cut(s)	171, 176, 423, 924
HpySE526I	ACGT	4 cut(s)	171, 176, 423, 924
HspAI	GCGC	2 cut(s)	286, 2397
Kpn2I	TCCGGA	3 cut(s)	457, 518, 1619
Ksp22I	TGATCA	3 cut(s)	207, 1378, 2214
Kzo9I	GATC	8 cut(s)	207, 214, 525, 1003, 1159, 1378, 2214, 2323
LmnI	GCTCC	4 cut(s)	1810, 1990, 2047, 2404
Lsp1109I	GCAGC	3 cut(s)	280, 2406, 2542
LweI	GCATC	6 cut(s)	229, 496, 943, 1696, 2293, 2494
MaeI	CTAG	9 cut(s)	501, 558, 1194, 1257, 1827, 2018, 2267, 2358, 2607
MaeII	ACGT	4 cut(s)	171, 176, 423, 924
MalI	GATC	8 cut(s)	209, 216, 527, 1005, 1161, 1380, 2216, 2325
MboI	GATC	8 cut(s)	207, 214, 525, 1003, 1159, 1378, 2214, 2323
MfeI	CAATTG	1 cut(s)	2232
MflI	RGATCY	2 cut(s)	525, 1159
MhlI	GDGCHC	2 cut(s)	1131, 1755
MlsI	TGGCCA	1 cut(s)	1886
MluNI	TGGCCA	1 cut(s)	1886
MlyI	GAGTC	3 cut(s)	700, 1762, 2669
MmeI	TCCRAC	1 cut(s)	1788
Mox20I	TGGCCA	1 cut(s)	1886
MroI	TCCGGA	3 cut(s)	457, 518, 1619
MroXI	GAANNNNTTC	3 cut(s)	99, 362, 1737
MscI	TGGCCA	1 cut(s)	1886
MseI	TTAA	8 cut(s)	912, 1218, 1416, 1914, 2204, 2295, 2334, 2528
MslI	CAYNNNNRTG	4 cut(s)	203, 1257, 1374, 1819
Msp20I	TGGCCA	1 cut(s)	1886
MspR9I	CCNGG	4 cut(s)	11, 163, 443, 628
MunI	CAATTG	1 cut(s)	2232
Mva1269I	GAATGC	2 cut(s)	52, 2631
MvaI	CCWGG	2 cut(s)	163, 443
NciI	CCSGG	2 cut(s)	11, 628
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	8 cut(s)	207, 214, 525, 1003, 1159, 1378, 2214, 2323
NlaIV	GGNNCC	6 cut(s)	304, 625, 741, 1812, 2043, 2406
NmuCI	GTSAC	8 cut(s)	33, 196, 925, 1367, 1510, 2157, 2261, 2269
NsbI	TGCGCA	1 cut(s)	287
NspI	RCATGY	2 cut(s)	1044, 1759
OliI	CACNNNNGTG	1 cut(s)	1374
PaeR7I	CTCGAG	1 cut(s)	708
PagI	TCATGA	1 cut(s)	204
PceI	AGGCCT	2 cut(s)	1641, 2419
PciI	ACATGT	1 cut(s)	1040
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	2 cut(s)	52, 2631
PdmI	GAANNNNTTC	3 cut(s)	99, 362, 1737
PfeI	GAWTC	5 cut(s)	404, 454, 631, 1616, 2582
PflMI	CCANNNNNTGG	2 cut(s)	135, 1699
PfoI	TCCNGGA	1 cut(s)	626
PinAI	ACCGGT	2 cut(s)	899, 1109
PkrI	GCNGC	4 cut(s)	270, 1761, 2396, 2557
PleI	GAGTC	3 cut(s)	700, 1762, 2668
PpsI	GAGTC	3 cut(s)	700, 1762, 2668
PpuMI	RGGWCCY	2 cut(s)	740, 881
PscI	ACATGT	1 cut(s)	1040
PshAI	GACNNNNGTC	1 cut(s)	2427
PshBI	ATTAAT	2 cut(s)	2204, 2334
Psp124BI	GAGCTC	1 cut(s)	1131
Psp5II	RGGWCCY	2 cut(s)	740, 881
Psp6I	CCWGG	2 cut(s)	161, 441
PspEI	GGTNACC	3 cut(s)	196, 565, 965
PspGI	CCWGG	2 cut(s)	161, 441
PspN4I	GGNNCC	6 cut(s)	304, 625, 741, 1812, 2043, 2406
PspPI	GGNCC	8 cut(s)	79, 302, 740, 881, 1249, 1262, 1448, 1681
PspPPI	RGGWCCY	2 cut(s)	740, 881
PspXI	VCTCGAGB	1 cut(s)	708
PstNI	CAGNNNCTG	3 cut(s)	274, 2149, 2375
PsuI	RGATCY	2 cut(s)	525, 1159
RsaI	GTAC	6 cut(s)	160, 1021, 1191, 2368, 2411, 2445
RsaNI	GTAC	6 cut(s)	159, 1020, 1190, 2367, 2410, 2444
RseI	CAYNNNNRTG	4 cut(s)	203, 1257, 1374, 1819
SacI	GAGCTC	1 cut(s)	1131
SalI	GTCGAC	1 cut(s)	425
SaqAI	TTAA	8 cut(s)	912, 1218, 1416, 1914, 2204, 2295, 2334, 2528
SatI	GCNGC	4 cut(s)	269, 1760, 2395, 2556
Sau3AI	GATC	8 cut(s)	207, 214, 525, 1003, 1159, 1378, 2214, 2323
Sau96I	GGNCC	8 cut(s)	79, 302, 740, 881, 1249, 1262, 1448, 1681
SchI	GAGTC	3 cut(s)	700, 1762, 2669
ScrFI	CCNGG	4 cut(s)	11, 163, 443, 628
SduI	GDGCHC	2 cut(s)	1131, 1755
SfaNI	GCATC	6 cut(s)	229, 496, 943, 1696, 2293, 2494
Sfr274I	CTCGAG	1 cut(s)	708
SgrAI	CRCCGGYG	1 cut(s)	899
SinI	GGWCC	7 cut(s)	79, 302, 740, 881, 1249, 1448, 1681
SlaI	CTCGAG	1 cut(s)	708
SmiMI	CAYNNNNRTG	4 cut(s)	203, 1257, 1374, 1819
SmlI	CTYRAG	3 cut(s)	335, 708, 2171
SmoI	CTYRAG	3 cut(s)	335, 708, 2171
SseBI	AGGCCT	2 cut(s)	1641, 2419
SsiI	CCGC	5 cut(s)	42, 1760, 1948, 2610, 2683
SspI	AATATT	4 cut(s)	1927, 2108, 2130, 2202
SspMI	CTAG	9 cut(s)	501, 558, 1194, 1257, 1827, 2018, 2267, 2358, 2607
SstI	GAGCTC	1 cut(s)	1131
StuI	AGGCCT	2 cut(s)	1641, 2419
StyD4I	CCNGG	4 cut(s)	9, 161, 441, 626
StyI	CCWWGG	3 cut(s)	90, 570, 1845
TaaI	ACNGT	7 cut(s)	39, 725, 1066, 1319, 1402, 1442, 2371
TaiI	ACGT	4 cut(s)	174, 179, 426, 927
TaqI	TCGA	7 cut(s)	105, 402, 426, 594, 709, 1201, 2517
TatI	WGTACW	2 cut(s)	2366, 2443
TauI	GCSGC	1 cut(s)	1762
TfiI	GAWTC	5 cut(s)	404, 454, 631, 1616, 2582
Tru1I	TTAA	8 cut(s)	912, 1218, 1416, 1914, 2204, 2295, 2334, 2528
Tru9I	TTAA	8 cut(s)	912, 1218, 1416, 1914, 2204, 2295, 2334, 2528
TscAI	CASTG	4 cut(s)	42, 1608, 2471, 2581
TseFI	GTSAC	8 cut(s)	33, 196, 925, 1367, 1510, 2157, 2261, 2269
TseI	GCWGC	3 cut(s)	268, 2394, 2555
Tsp45I	GTSAC	8 cut(s)	33, 196, 925, 1367, 1510, 2157, 2261, 2269
TspGWI	ACGGA	3 cut(s)	1109, 1461, 2176
TspRI	CASTG	4 cut(s)	42, 1608, 2471, 2581
Van91I	CCANNNNNTGG	2 cut(s)	135, 1699
VpaK11BI	GGWCC	7 cut(s)	79, 302, 740, 881, 1249, 1448, 1681
VspI	ATTAAT	2 cut(s)	2204, 2334
XagI	CCTNNNNNAGG	1 cut(s)	2424
XapI	RAATTY	6 cut(s)	416, 533, 752, 784, 1135, 1345
XceI	RCATGY	2 cut(s)	1044, 1759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	708
XmiI	GTMKAC	2 cut(s)	426, 1777
XmnI	GAANNNNTTC	3 cut(s)	99, 362, 1737
XspI	CTAG	9 cut(s)	501, 558, 1194, 1257, 1827, 2018, 2267, 2358, 2607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.