Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010284.1

Orthogroup ID

OG0003113

Physical Location & Seq

Genomic Coordinates Reverse (-)

2658 .. 3803

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010284.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgtcagtttgtccagcaatttgcttcaaggacctatgcccaatttcaccggtggtgctattaagcaagtggccggacgtgacatctaataacttttgcaccaatgatgctggtactaaatgcgatccccgcgtgactatattgctctccattgccaaagacatgggataccctactgcttttgcagagaattgtatagggaatgatccttgtggtggtagtactcattggactgttctaacatgttcaggaaaagatgacattacagttctcaattttcccaacatgggtctgacgggtacgatttcttccaatttttcattgcttacatccttgaatagattgatacttagagataatagtctaaccggtattataccccaagagctcacaaatttggacaaccttgaagaaatagatctctcaaacaataaactttgtggtaaagtacctagctttcgagaaaatgtggtggttaagttaggaggaaacccagacataggtaaggaccatcctagtggccctactagtggtggaggtagcaagaaatccaagactggtgtgattgttggggttgttatgggatgtattgttggagcacttatagttggttttcttgctttttatttgcttaagagaaaacatagtcgttatggtaaagtgcaaagtccaaattcattggttatacatcctcgtcactctggtgatcaaaatgctgtcaaaattactgttactaacagggttaatggcattggaagtgaaaatcacagtaacggacctaatgatattcaagttgaggctggaaatatgataatttcaatccaggttttgaggggtgtgaccaataacttcaatgaagataagatattgggaaaaggtgggtttggaactgtgtatgaaggagaattgcatgatggaacgaaaattgcagtgaagagaatggaatccggagtggtagctgagaaaggcctgcatgagttcaagttgagattgcagttcttactaaggtccgacatcgccacttggtgggacttcttggatattgtttggatgggaatgagaggcttcttgtctatgagcacatgccgcaggggacgcttagtagacatttgttcaactggaaagaagaaggctggagccacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

381

Amino Acids

41.11

Weight (kDa)

8.77

Isoelectric Point (pI)

19.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01820
fragaria_vesca	FvH4_4g33170 FvH4_4g33170 FvH4_4g33171
malus_domestica	MD13G1017200.v1.1 MD16G1015000.v1.1 MD16G1015200.v1.1
prunus_persica	Prupe.1G336300_v2.0.a1 Prupe.1G336300_v2.0.a1
pyrus_communis	pycom13g01480 pycom16g01400
rosa_chinensis	RchiOBHm_Chr4g0442211 RchiOBHm_Chr4g0442221 RchiOBHm_Chr4g0442231
rosa_laevigata	RLG00000006022 RLG00000006023
rosa_multiflora	Rmu_co8222306.1_g000001 Rmu_sc0000124.1_g000060 Rmu_sc0000124.1_g000062 Rmu_sc0010284.1_g000002 Rmu_sc0010284.1_g000003
rosa_roxburghii	Rroxscaffold_5G00383140 Rroxscaffold_5G00383150
rosa_rugosa	Rorug04G0339700 Rorug04G0339800 Rorug04G0339900
rosa_samantha	Rh4AG391300 Rh4AG391400 Rh4BG405000 Rh4BG405100 Rh4CG420100 Rh4CG420200 Rh4DG398100 Rh4DG398200 Rh4DG398300
rosa_wichuraiana	Rw4G033820 Rw4G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1026
AccI	GTMKAC	1 cut(s)	1104
AccII	CGCG	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	947
AciI	CCGC	2 cut(s)	130, 1087
AclWI	GGATC	2 cut(s)	119, 200
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	394, 673
AdeI	CACNNNGTG	1 cut(s)	1026
AfaI	GTAC	4 cut(s)	115, 223, 301, 450
AfiI	CCNNNNNNNGG	5 cut(s)	215, 287, 500, 530, 1026
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	242
AgeI	ACCGGT	2 cut(s)	49, 368
AgsI	TTSAA	8 cut(s)	28, 337, 410, 791, 819, 853, 982, 1116
AhlI	ACTAGT	1 cut(s)	527
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	822
AleI	CACNNNNGTG	1 cut(s)	702
AluBI	AGCT	3 cut(s)	388, 456, 959
AluI	AGCT	3 cut(s)	388, 456, 959
Alw21I	GWGCWC	3 cut(s)	390, 601, 1082
AlwI	GGATC	2 cut(s)	119, 200
Aor13HI	TCCGGA	1 cut(s)	947
AoxI	GGCC	3 cut(s)	71, 520, 967
ApoI	RAATTY	2 cut(s)	394, 673
AsiGI	ACCGGT	2 cut(s)	49, 368
AspS9I	GGNCC	5 cut(s)	31, 508, 521, 776, 1008
AsuHPI	GGTGA	2 cut(s)	39, 716
AvaII	GGWCC	4 cut(s)	31, 508, 776, 1008
BanII	GRGCYC	1 cut(s)	390
BarI	GAAGNNNNNNTAC	2 cut(s)	292, 324
Bbv12I	GWGCWC	3 cut(s)	390, 601, 1082
BccI	CCATC	3 cut(s)	519, 908, 1045
BciT130I	CCWGG	1 cut(s)	824
BciVI	GTATCC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	706
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	3 cut(s)	453, 516, 528
BfrI	CTTAAG	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	161
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	1 cut(s)	1087
BlsI	GCNGC	1 cut(s)	1088
BmcAI	AGTACT	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	824
Bme18I	GGWCC	4 cut(s)	31, 508, 776, 1008
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	5 cut(s)	31, 508, 521, 776, 1008
BmiI	GGNNCC	1 cut(s)	1138
BmrFI	CCNGG	1 cut(s)	824
BmsI	GCATC	1 cut(s)	97
BsaWI	WCCGGW	3 cut(s)	49, 368, 947
Bsc4I	CCNNNNNNNGG	5 cut(s)	215, 287, 500, 530, 1026
Bse118I	RCCGGY	2 cut(s)	49, 368
Bse1I	ACTGG	2 cut(s)	562, 1123
Bse3DI	GCAATG	2 cut(s)	150, 320
BseAI	TCCGGA	1 cut(s)	947
BseBI	CCWGG	1 cut(s)	824
BseGI	GGATG	5 cut(s)	329, 511, 590, 688, 1056
BseLI	CCNNNNNNNGG	5 cut(s)	215, 287, 500, 530, 1026
BseMI	GCAATG	2 cut(s)	150, 320
BseMII	CTCAG	1 cut(s)	951
BseNI	ACTGG	2 cut(s)	562, 1123
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	73, 522, 969
BshTI	ACCGGT	2 cut(s)	49, 368
BsiHKAI	GWGCWC	3 cut(s)	390, 601, 1082
BsiSI	CCGG	4 cut(s)	50, 74, 369, 948
BslFI	GGGAC	2 cut(s)	1043, 1107
BslI	CCNNNNNNNGG	5 cut(s)	215, 287, 500, 530, 1026
BsmFI	GGGAC	2 cut(s)	1043, 1107
BsnI	GGCC	3 cut(s)	73, 522, 969
Bsp1286I	GDGCHC	3 cut(s)	390, 601, 1082
Bsp13I	TCCGGA	1 cut(s)	947
Bsp143I	GATC	4 cut(s)	124, 205, 418, 706
BspACI	CCGC	2 cut(s)	130, 1087
BspANI	GGCC	3 cut(s)	73, 522, 969
BspCNI	CTCAG	1 cut(s)	952
BspEI	TCCGGA	1 cut(s)	947
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	1138
BspPI	GGATC	2 cut(s)	119, 200
BspTI	CTTAAG	1 cut(s)	632
BsrDI	GCAATG	2 cut(s)	150, 320
BsrFI	RCCGGY	2 cut(s)	49, 368
BsrI	ACTGG	2 cut(s)	562, 1123
BssAI	RCCGGY	2 cut(s)	49, 368
BssMI	GATC	4 cut(s)	124, 205, 418, 706
Bst2UI	CCWGG	1 cut(s)	824
Bst4CI	ACNGT	5 cut(s)	235, 268, 730, 770, 892
Bst6I	CTCTTC	1 cut(s)	929
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	971
BstDEI	CTNAG	4 cut(s)	350, 960, 1004, 1099
BstF5I	GGATG	5 cut(s)	329, 511, 590, 688, 1056
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	127, 208, 421, 709
BstMBI	GATC	4 cut(s)	124, 205, 418, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 1086, 1095
BstNI	CCWGG	1 cut(s)	824
BstNSI	RCATGY	2 cut(s)	246, 1086
BstSCI	CCNGG	1 cut(s)	822
BstUI	CGCG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	418
BstXI	CCANNNNNNTGG	2 cut(s)	163, 518
BstYI	RGATCY	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	3 cut(s)	73, 522, 969
BtgZI	GCGATG	1 cut(s)	1000
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	5 cut(s)	329, 511, 590, 688, 1056
BtsI	GCAGTG	1 cut(s)	936
BtsIMutI	CAGTG	1 cut(s)	936
Cac8I	GCNNGC	1 cut(s)	971
Cfr10I	RCCGGY	2 cut(s)	49, 368
Cfr13I	GGNCC	5 cut(s)	31, 508, 521, 776, 1008
CseI	GACGC	1 cut(s)	1104
Csp6I	GTAC	4 cut(s)	114, 222, 300, 449
CspAI	ACCGGT	2 cut(s)	49, 368
CviAII	CATG	6 cut(s)	163, 243, 286, 911, 974, 1083
CviQI	GTAC	4 cut(s)	114, 222, 300, 449
DdeI	CTNAG	4 cut(s)	350, 960, 1004, 1099
DpnI	GATC	4 cut(s)	126, 207, 420, 708
DpnII	GATC	4 cut(s)	124, 205, 418, 706
DraIII	CACNNNGTG	1 cut(s)	1026
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	929
EarI	CTCTTC	1 cut(s)	929
Ecl136II	GAGCTC	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	969
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	4 cut(s)	31, 508, 776, 1008
Eco53kI	GAGCTC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	822
EcoT38I	GRGCYC	1 cut(s)	390
FaeI	CATG	6 cut(s)	166, 246, 289, 914, 977, 1086
FaqI	GGGAC	2 cut(s)	1043, 1107
FatI	CATG	6 cut(s)	162, 242, 285, 910, 973, 1082
FauI	CCCGC	1 cut(s)	137
FbaI	TGATCA	1 cut(s)	706
FblI	GTMKAC	1 cut(s)	1104
Fnu4HI	GCNGC	1 cut(s)	1087
FokI	GGATG	5 cut(s)	316, 498, 597, 675, 1063
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	1087
FspBI	CTAG	3 cut(s)	453, 516, 528
GluI	GCNGC	1 cut(s)	1087
HaeIII	GGCC	3 cut(s)	73, 522, 969
HapII	CCGG	4 cut(s)	50, 74, 369, 948
HgaI	GACGC	1 cut(s)	1104
Hin1II	CATG	6 cut(s)	166, 246, 289, 914, 977, 1086
HinfI	GANTC	1 cut(s)	944
HpaII	CCGG	4 cut(s)	50, 74, 369, 948
HphI	GGTGA	2 cut(s)	39, 716
Hpy166II	GTNNAC	1 cut(s)	1105
Hpy188I	TCNGA	2 cut(s)	294, 1012
Hpy188III	TCNNGA	3 cut(s)	249, 461, 948
Hpy8I	GTNNAC	1 cut(s)	1105
HpyAV	CCTTC	2 cut(s)	893, 1123
HpyCH4III	ACNGT	5 cut(s)	235, 268, 730, 770, 892
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	7 cut(s)	99, 185, 664, 910, 929, 973, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 1086, 1095
HpyF3I	CTNAG	4 cut(s)	350, 960, 1004, 1099
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	6 cut(s)	166, 246, 289, 914, 977, 1086
Kpn2I	TCCGGA	1 cut(s)	947
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	4 cut(s)	124, 205, 418, 706
LmnI	GCTCC	2 cut(s)	596, 1136
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	3 cut(s)	453, 516, 528
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	6 cut(s)	79, 133, 695, 730, 770, 838
MalI	GATC	4 cut(s)	126, 207, 420, 708
MboI	GATC	4 cut(s)	124, 205, 418, 706
MboII	GAAGA	5 cut(s)	300, 422, 869, 946, 1138
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	3 cut(s)	390, 601, 1082
MmeI	TCCRAC	2 cut(s)	574, 1035
MnlI	CCTC	6 cut(s)	479, 530, 702, 790, 825, 1055
MroI	TCCGGA	1 cut(s)	947
MseI	TTAA	4 cut(s)	62, 477, 633, 744
MslI	CAYNNNNRTG	2 cut(s)	516, 702
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	4 cut(s)	50, 74, 369, 948
MspR9I	CCNGG	1 cut(s)	824
MvaI	CCWGG	1 cut(s)	824
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	129, 1086, 1095
NdeII	GATC	4 cut(s)	124, 205, 418, 706
NlaIII	CATG	6 cut(s)	166, 246, 289, 914, 977, 1086
NlaIV	GGNNCC	1 cut(s)	1138
NmuCI	GTSAC	4 cut(s)	79, 133, 695, 838
NspI	RCATGY	2 cut(s)	246, 1086
OliI	CACNNNNGTG	1 cut(s)	702
PceI	AGGCCT	1 cut(s)	969
PciI	ACATGT	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	944
PflMI	CCANNNNNTGG	1 cut(s)	1026
PinAI	ACCGGT	2 cut(s)	49, 368
PkrI	GCNGC	1 cut(s)	1088
PpuMI	RGGWCCY	1 cut(s)	31
PscI	ACATGT	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	822
PspGI	CCWGG	1 cut(s)	822
PspN4I	GGNNCC	1 cut(s)	1138
PspPI	GGNCC	5 cut(s)	31, 508, 521, 776, 1008
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	4 cut(s)	115, 223, 301, 450
RsaNI	GTAC	4 cut(s)	114, 222, 300, 449
RseI	CAYNNNNRTG	2 cut(s)	516, 702
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	62, 477, 633, 744
SatI	GCNGC	1 cut(s)	1087
Sau3AI	GATC	4 cut(s)	124, 205, 418, 706
Sau96I	GGNCC	5 cut(s)	31, 508, 521, 776, 1008
ScaI	AGTACT	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	824
SduI	GDGCHC	3 cut(s)	390, 601, 1082
SfaNI	GCATC	1 cut(s)	97
SgrAI	CRCCGGYG	1 cut(s)	49
SinI	GGWCC	4 cut(s)	31, 508, 776, 1008
SmiMI	CAYNNNNRTG	2 cut(s)	516, 702
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
SpeI	ACTAGT	1 cut(s)	527
SseBI	AGGCCT	1 cut(s)	969
SsiI	CCGC	2 cut(s)	130, 1087
SspMI	CTAG	3 cut(s)	453, 516, 528
SstI	GAGCTC	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	969
StyD4I	CCNGG	1 cut(s)	822
TaaI	ACNGT	5 cut(s)	235, 268, 730, 770, 892
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	460
TatI	WGTACW	1 cut(s)	221
TauI	GCSGC	1 cut(s)	1089
TfiI	GAWTC	1 cut(s)	944
Tru1I	TTAA	4 cut(s)	62, 477, 633, 744
Tru9I	TTAA	4 cut(s)	62, 477, 633, 744
TscAI	CASTG	1 cut(s)	936
TseFI	GTSAC	4 cut(s)	79, 133, 695, 838
Tsp45I	GTSAC	4 cut(s)	79, 133, 695, 838
TspDTI	ATGAA	4 cut(s)	309, 666, 870, 912
TspGWI	ACGGA	1 cut(s)	789
TspRI	CASTG	1 cut(s)	936
Van91I	CCANNNNNTGG	1 cut(s)	1026
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	4 cut(s)	31, 508, 776, 1008
XapI	RAATTY	2 cut(s)	394, 673
XceI	RCATGY	2 cut(s)	246, 1086
XmiI	GTMKAC	1 cut(s)	1104
XspI	CTAG	3 cut(s)	453, 516, 528
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.