Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0035011 |
| rosa_multiflora | Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070 |
| rosa_rugosa | Rorug07G0045100 |
| rosa_samantha | Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 144 |
| AccII | CGCG | 1 cut(s) | 138 |
| AciI | CCGC | 3 cut(s) | 101, 136, 152 |
| AcsI | RAATTY | 1 cut(s) | 76 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 56, 128 |
| AgsI | TTSAA | 1 cut(s) | 76 |
| AluBI | AGCT | 1 cut(s) | 85 |
| AluI | AGCT | 1 cut(s) | 85 |
| Alw26I | GTCTC | 1 cut(s) | 120 |
| AoxI | GGCC | 1 cut(s) | 104 |
| ApoI | RAATTY | 1 cut(s) | 76 |
| AspS9I | GGNCC | 1 cut(s) | 104 |
| AxyI | CCTNAGG | 1 cut(s) | 51 |
| BbsI | GAAGAC | 2 cut(s) | 12, 18 |
| BcoDI | GTCTC | 1 cut(s) | 120 |
| BisI | GCNGC | 1 cut(s) | 136 |
| BlsI | GCNGC | 1 cut(s) | 137 |
| BmgT120I | GGNCC | 1 cut(s) | 104 |
| BmiI | GGNNCC | 1 cut(s) | 105 |
| BpiI | GAAGAC | 2 cut(s) | 12, 18 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 56, 128 |
| Bse21I | CCTNAGG | 1 cut(s) | 51 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 56, 128 |
| BseMII | CTCAG | 2 cut(s) | 65, 72 |
| Bsh1236I | CGCG | 1 cut(s) | 138 |
| BshFI | GGCC | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 56, 128 |
| BsmAI | GTCTC | 1 cut(s) | 120 |
| BsnI | GGCC | 1 cut(s) | 106 |
| BspACI | CCGC | 3 cut(s) | 101, 136, 152 |
| BspANI | GGCC | 1 cut(s) | 106 |
| BspCNI | CTCAG | 2 cut(s) | 64, 73 |
| BspFNI | CGCG | 1 cut(s) | 138 |
| BspLI | GGNNCC | 1 cut(s) | 105 |
| Bst4CI | ACNGT | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 2 cut(s) | 93, 123 |
| BstDEI | CTNAG | 2 cut(s) | 51, 81 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 54 |
| BstFNI | CGCG | 1 cut(s) | 138 |
| BstMAI | GTCTC | 1 cut(s) | 120 |
| BstNSI | RCATGY | 1 cut(s) | 95 |
| BstUI | CGCG | 1 cut(s) | 138 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 18 |
| Bsu36I | CCTNAGG | 1 cut(s) | 51 |
| BsuRI | GGCC | 1 cut(s) | 106 |
| BtsIMutI | CAGTG | 1 cut(s) | 169 |
| Cac8I | GCNNGC | 2 cut(s) | 93, 123 |
| Cfr13I | GGNCC | 1 cut(s) | 104 |
| CviAII | CATG | 1 cut(s) | 92 |
| CviJI | RGCY | 5 cut(s) | 7, 49, 85, 106, 135 |
| CviKI_1 | RGCY | 5 cut(s) | 7, 49, 85, 106, 135 |
| DdeI | CTNAG | 2 cut(s) | 51, 81 |
| Eco81I | CCTNAGG | 1 cut(s) | 51 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 54 |
| EcoO109I | RGGNCCY | 1 cut(s) | 104 |
| EcoRI | GAATTC | 1 cut(s) | 76 |
| FaeI | CATG | 1 cut(s) | 95 |
| FaiI | YATR | 2 cut(s) | 88, 93 |
| FatI | CATG | 1 cut(s) | 91 |
| FauI | CCCGC | 1 cut(s) | 94 |
| FblI | GTMKAC | 1 cut(s) | 144 |
| Fnu4HI | GCNGC | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 1 cut(s) | 136 |
| GluI | GCNGC | 1 cut(s) | 136 |
| HaeIII | GGCC | 1 cut(s) | 106 |
| Hin1II | CATG | 1 cut(s) | 95 |
| Hpy166II | GTNNAC | 1 cut(s) | 145 |
| Hpy188I | TCNGA | 1 cut(s) | 82 |
| Hpy188III | TCNNGA | 1 cut(s) | 53 |
| Hpy8I | GTNNAC | 1 cut(s) | 145 |
| HpyAV | CCTTC | 1 cut(s) | 50 |
| HpyCH4III | ACNGT | 1 cut(s) | 164 |
| HpyF3I | CTNAG | 2 cut(s) | 51, 81 |
| Hsp92II | CATG | 1 cut(s) | 95 |
| LpnPI | CCDG | 3 cut(s) | 38, 95, 135 |
| MaeIII | GTNAC | 1 cut(s) | 158 |
| MboII | GAAGA | 5 cut(s) | 3, 6, 12, 18, 76 |
| MluCI | AATT | 1 cut(s) | 76 |
| MnlI | CCTC | 2 cut(s) | 60, 117 |
| MseI | TTAA | 1 cut(s) | 36 |
| MslI | CAYNNNNRTG | 1 cut(s) | 96 |
| MvnI | CGCG | 1 cut(s) | 138 |
| NlaIII | CATG | 1 cut(s) | 95 |
| NlaIV | GGNNCC | 1 cut(s) | 105 |
| NmuCI | GTSAC | 1 cut(s) | 158 |
| NspI | RCATGY | 1 cut(s) | 95 |
| PaeI | GCATGC | 1 cut(s) | 95 |
| PkrI | GCNGC | 1 cut(s) | 137 |
| PspN4I | GGNNCC | 1 cut(s) | 105 |
| PspPI | GGNCC | 1 cut(s) | 104 |
| RseI | CAYNNNNRTG | 1 cut(s) | 96 |
| SaqAI | TTAA | 1 cut(s) | 36 |
| SatI | GCNGC | 1 cut(s) | 136 |
| Sau96I | GGNCC | 1 cut(s) | 104 |
| SetI | ASST | 2 cut(s) | 87, 160 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 96 |
| SphI | GCATGC | 1 cut(s) | 95 |
| Sse9I | AATT | 1 cut(s) | 76 |
| SsiI | CCGC | 3 cut(s) | 101, 136, 152 |
| TaaI | ACNGT | 1 cut(s) | 164 |
| TasI | AATT | 1 cut(s) | 76 |
| TauI | GCSGC | 1 cut(s) | 138 |
| Tru1I | TTAA | 1 cut(s) | 36 |
| Tru9I | TTAA | 1 cut(s) | 36 |
| TscAI | CASTG | 1 cut(s) | 169 |
| TseFI | GTSAC | 1 cut(s) | 158 |
| Tsp45I | GTSAC | 1 cut(s) | 158 |
| TspRI | CASTG | 1 cut(s) | 169 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 54 |
| XapI | RAATTY | 1 cut(s) | 76 |
| XceI | RCATGY | 1 cut(s) | 95 |
| XmiI | GTMKAC | 1 cut(s) | 144 |