Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010625

Physical Location & Seq

Genomic Coordinates Forward (+)

16850125 .. 16852398

Gene Structure 2274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAAGAGAAGATGAGAATTGGAGGAGGGTTGCTTAGTGGAGCACAGTCTAGTATACTTGAGGAGATGAAGTTGTTAAAAGAACTGGAGGATCATTCTGGCAGCGATACTGATGTCTACCAGTACCTAGAGCCTCTGTACAATGACTATCGGAAGTTGAGAAGTAAATTGGTTGATGGACGTTTCTCGTTGACTCATGTGGATGAGCTTATTGATGAACTTCTGACAAAGGACTACTCATGCGACATTGCCATGCCACGAATCAAGAAAAGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

92

Amino Acids

10.57

Weight (kDa)

4.95

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	35 - 90	2.8e-16	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010625)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035011
rosa_multiflora	Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070
rosa_rugosa	Rorug07G0045100
rosa_samantha	Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	55, 117
AclWI	GGATC	1 cut(s)	99
AfaI	GTAC	2 cut(s)	125, 140
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	102
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	51, 128
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse1I	ACTGG	2 cut(s)	90, 121
Bse3DI	GCAATG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	90, 121
BseRI	GAGGAG	2 cut(s)	39, 77
BseXI	GCAGC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	90, 121
BssMI	GATC	1 cut(s)	91
BssNAI	GTATAC	1 cut(s)	56
Bst1107I	GTATAC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	114
BstZ17I	GTATAC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	124, 139
CviAII	CATG	3 cut(s)	197, 240, 253
CviJI	RGCY	2 cut(s)	133, 208
CviKI_1	RGCY	2 cut(s)	133, 208
CviQI	GTAC	2 cut(s)	124, 139
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
FaeI	CATG	3 cut(s)	200, 243, 256
FaiI	YATR	4 cut(s)	56, 198, 241, 254
FatI	CATG	3 cut(s)	196, 239, 252
FblI	GTMKAC	2 cut(s)	55, 117
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	2 cut(s)	51, 128
GluI	GCNGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	107
Hin1II	CATG	3 cut(s)	200, 243, 256
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	193, 261
Hpy166II	GTNNAC	3 cut(s)	56, 118, 192
Hpy188I	TCNGA	2 cut(s)	153, 225
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	3 cut(s)	56, 118, 192
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	181
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	3 cut(s)	200, 243, 256
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	3 cut(s)	71, 84, 134
Lsp1109I	GCAGC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	51, 128
MaeII	ACGT	1 cut(s)	181
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	17, 22
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	18, 167
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	17, 20, 55, 82, 144
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	2 cut(s)	201, 251
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	200, 243, 256
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
RsaI	GTAC	2 cut(s)	125, 140
RsaNI	GTAC	2 cut(s)	124, 139
RseI	CAYNNNNRTG	2 cut(s)	201, 251
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	3 cut(s)	129, 184, 210
SmiMI	CAYNNNNRTG	2 cut(s)	201, 251
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	18, 167
SspMI	CTAG	2 cut(s)	51, 128
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	184
TasI	AATT	2 cut(s)	18, 167
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	83, 231
XmiI	GTMKAC	2 cut(s)	55, 117
XspI	CTAG	2 cut(s)	51, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.