Rh7DG422400

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010625
Physical Location & Seq
Reverse (-)
59672789 .. 59675001
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG422400.1

Sequence Viewer

Length: 414 bp
ATGGGCAGAGCCAAAGCCAGACGAGACCCAAAGCTGAAGGTGAAGCAGCCCTACTTGGGAAAAAAAGAGCCTTTGTGCAGATATGTTCGGGTACTTGGTGCATTTTACTTGCGTATCACAGGCAGCGATACTGATGTCTACCAGTACCTAGAGCCTCTGTACAATGACTATCGGAAGTTGAGAAGTAAATTGGCTGATGGACGTTTCTCTTTGACTCATGTGGATAAGCTTATTGATGAACTTCTGACAAAGGACTACTCATGCGACATTGCCATGCCACGAATCAAGAAAAGGGTCCCGGAAGGCCATAAATTCCGAGTTATGGCATGCCTGCGTCGGCCCCCTTGTCTTTCAACACGTCTTTTGGTGAGGAATGTTACAAGCAAGGAGGATACTGAGTTTGTGTATATGTAA

Protein Analysis

137

Amino Acids

16.13

Weight (kDa)

9.84

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP38 PF03371 26 - 99 5.5e-25 PRP38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 3 cut(s) 93, 146, 161
AfiI CCNNNNNNNGG 2 cut(s) 56, 322
AflIII ACRYGT 1 cut(s) 356
AgsI TTSAA 1 cut(s) 354
AjiI CACGTC 1 cut(s) 359
AluBI AGCT 2 cut(s) 34, 229
AluI AGCT 2 cut(s) 34, 229
Alw26I GTCTC 1 cut(s) 18
AoxI GGCC 2 cut(s) 304, 338
ApeKI GCWGC 2 cut(s) 46, 123
ApoI RAATTY 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 295, 339
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 52, 379
AvaII GGWCC 1 cut(s) 295
BaeI ACNNNNGTAYC 4 cut(s) 97, 120, 130, 153
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbvI GCAGC 2 cut(s) 58, 135
BccI CCATC 1 cut(s) 191
BciVI GTATCC 1 cut(s) 385
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 385
BisI GCNGC 2 cut(s) 47, 124
BlsI GCNGC 2 cut(s) 48, 125
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 295
BmgBI CACGTC 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 295, 339
BmiI GGNNCC 3 cut(s) 296, 297, 341
BmrFI CCNGG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 322
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 56, 322
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 58, 135
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 2 cut(s) 306, 340
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 56, 322
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 2 cut(s) 306, 340
Bso31I GGTCTC 1 cut(s) 18
Bsp1407I TGTACA 1 cut(s) 159
BspANI GGCC 2 cut(s) 306, 340
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 3 cut(s) 296, 297, 341
BspTNI GGTCTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 1 cut(s) 142
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 328, 332
BstDEI CTNAG 1 cut(s) 396
BstMAI GTCTC 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 58, 135
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 2 cut(s) 306, 340
BtrI CACGTC 1 cut(s) 359
Cac8I GCNNGC 2 cut(s) 328, 332
Cfr13I GGNCC 2 cut(s) 295, 339
CseI GACGC 1 cut(s) 323
Csp6I GTAC 3 cut(s) 92, 145, 160
CviAII CATG 4 cut(s) 218, 261, 274, 327
CviQI GTAC 3 cut(s) 92, 145, 160
DdeI CTNAG 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 295
FaeI CATG 4 cut(s) 221, 264, 277, 330
FaiI YATR 9 cut(s) 84, 219, 262, 275, 309, 323, 328, 408, 410
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 217, 260, 273, 326
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 47, 124
Fsp4HI GCNGC 2 cut(s) 47, 124
FspBI CTAG 1 cut(s) 149
GluI GCNGC 2 cut(s) 47, 124
HaeIII GGCC 2 cut(s) 306, 340
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 323
Hin1II CATG 4 cut(s) 221, 264, 277, 330
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 2 cut(s) 214, 282
HpaII CCGG 1 cut(s) 299
HphI GGTGA 2 cut(s) 52, 379
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 174, 246, 317
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 2 cut(s) 31, 296
HpyCH4IV ACGT 2 cut(s) 202, 358
HpyCH4V TGCA 2 cut(s) 78, 101
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 2 cut(s) 202, 358
Hsp92II CATG 4 cut(s) 221, 264, 277, 330
KflI GGGWCCC 1 cut(s) 295
LpnPI CCDG 5 cut(s) 31, 105, 155, 312, 344
Lsp1109I GCAGC 2 cut(s) 58, 135
MaeI CTAG 1 cut(s) 149
MaeII ACGT 2 cut(s) 202, 358
MaeIII GTNAC 1 cut(s) 376
MluCI AATT 2 cut(s) 188, 311
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 3 cut(s) 165, 363, 382
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 299
NciI CCSGG 1 cut(s) 299
NlaIII CATG 4 cut(s) 221, 264, 277, 330
NlaIV GGNNCC 3 cut(s) 296, 297, 341
NspI RCATGY 1 cut(s) 330
PaeI GCATGC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 282
PfoI TCCNGGA 1 cut(s) 297
PkrI GCNGC 2 cut(s) 48, 125
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
PspN4I GGNNCC 3 cut(s) 296, 297, 341
PspPI GGNCC 2 cut(s) 295, 339
PspPPI RGGWCCY 1 cut(s) 295
RsaI GTAC 3 cut(s) 93, 146, 161
RsaNI GTAC 3 cut(s) 92, 145, 160
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 2 cut(s) 47, 124
Sau96I GGNCC 2 cut(s) 295, 339
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 299
SetI ASST 6 cut(s) 36, 42, 150, 205, 231, 361
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 272
SphI GCATGC 1 cut(s) 330
Sse9I AATT 2 cut(s) 188, 311
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 297
TaiI ACGT 2 cut(s) 205, 361
TasI AATT 2 cut(s) 188, 311
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 282
TseI GCWGC 2 cut(s) 46, 123
TspDTI ATGAA 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.