Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010625

Physical Location & Seq

Genomic Coordinates Forward (+)

47850367 .. 47850652

Gene Structure 286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG225700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGCCTTAGCTTCATTTTTTGCAAGTGCATGTGCCAAATATGTAGATGAGACTAATGACCTGTTTGCCTTAGTAGCTCCTCAGAATGCTGTCGAGAATTGTATTATTGAGGATTTGCAAGCTATGACTGATGCTGCTGGGGACCGACCAGTAATTCTTATCAATCCTAGGCATAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0050145 GO:0055035 GO:0055086 GO:0071704 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK DUF1995

Protein Analysis

60

Amino Acids

6.49

Weight (kDa)

4.45

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1995	PF09353	13 - 57	6.1e-08	Domain of unknown function (DUF1995)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010625)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035011
rosa_multiflora	Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070
rosa_rugosa	Rorug07G0045100
rosa_samantha	Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	3 cut(s)	11, 77, 122
AluI	AGCT	3 cut(s)	11, 77, 122
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	134
AspA2I	CCTAGG	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
AvrII	CCTAGG	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	135
BlnI	CCTAGG	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	143
BmsI	GCATC	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	7, 70, 81
BstMAI	GTCTC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	4 cut(s)	5, 11, 77, 122
CviKI_1	RGCY	4 cut(s)	5, 11, 77, 122
DdeI	CTNAG	3 cut(s)	7, 70, 81
Eco130I	CCWWGG	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	33
FaiI	YATR	4 cut(s)	31, 42, 125, 174
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	23, 29, 118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	3 cut(s)	7, 70, 81
Hsp92II	CATG	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	3 cut(s)	74, 123, 162
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	168
MluCI	AATT	2 cut(s)	97, 153
MnlI	CCTC	2 cut(s)	90, 103
Mva1269I	GAATGC	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	33
PctI	GAATGC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	142
SetI	ASST	5 cut(s)	13, 63, 79, 124, 180
SfaNI	GCATC	1 cut(s)	121
SgeI	CNNG	7 cut(s)	36, 42, 73, 106, 131, 150, 161
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	2 cut(s)	97, 153
SspMI	CTAG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	167
TaqI	TCGA	1 cut(s)	93
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	97, 153
TseI	GCWGC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	142
XceI	RCATGY	1 cut(s)	33
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.