Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0035011 |
| rosa_multiflora | Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070 |
| rosa_rugosa | Rorug07G0045100 |
| rosa_samantha | Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 52, 114 |
| AclWI | GGATC | 1 cut(s) | 96 |
| AcsI | RAATTY | 1 cut(s) | 196 |
| AfaI | GTAC | 3 cut(s) | 122, 137, 315 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 207, 248 |
| AluBI | AGCT | 1 cut(s) | 130 |
| AluI | AGCT | 1 cut(s) | 130 |
| Alw21I | GWGCWC | 1 cut(s) | 43 |
| Alw26I | GTCTC | 1 cut(s) | 316 |
| AlwI | GGATC | 1 cut(s) | 96 |
| AoxI | GGCC | 3 cut(s) | 189, 223, 277 |
| ApeKI | GCWGC | 2 cut(s) | 99, 289 |
| ApoI | RAATTY | 1 cut(s) | 196 |
| AspS9I | GGNCC | 3 cut(s) | 180, 224, 277 |
| AsuC2I | CCSGG | 1 cut(s) | 184 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| AvaII | GGWCC | 1 cut(s) | 180 |
| AxyI | CCTNAGG | 1 cut(s) | 273 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 96, 129 |
| Bbv12I | GWGCWC | 1 cut(s) | 43 |
| BbvI | GCAGC | 2 cut(s) | 111, 301 |
| BccI | CCATC | 1 cut(s) | 167 |
| BcnI | CCSGG | 1 cut(s) | 184 |
| BcoDI | GTCTC | 1 cut(s) | 316 |
| BfaI | CTAG | 2 cut(s) | 48, 125 |
| BfmI | CTRYAG | 1 cut(s) | 83 |
| BisI | GCNGC | 2 cut(s) | 100, 290 |
| BlsI | GCNGC | 2 cut(s) | 101, 291 |
| Bme1390I | CCNGG | 1 cut(s) | 184 |
| Bme18I | GGWCC | 1 cut(s) | 180 |
| BmgT120I | GGNCC | 3 cut(s) | 180, 224, 277 |
| BmiI | GGNNCC | 2 cut(s) | 182, 226 |
| BmrFI | CCNGG | 1 cut(s) | 184 |
| BpuEI | CTTGAG | 2 cut(s) | 77, 228 |
| BpuMI | CCSGG | 1 cut(s) | 184 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 53, 83 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 207, 248 |
| Bse1I | ACTGG | 1 cut(s) | 118 |
| Bse21I | CCTNAGG | 1 cut(s) | 273 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 207, 248 |
| BseMII | CTCAG | 1 cut(s) | 287 |
| BseNI | ACTGG | 1 cut(s) | 118 |
| BseRI | GAGGAG | 1 cut(s) | 74 |
| BseXI | GCAGC | 2 cut(s) | 111, 301 |
| BshFI | GGCC | 3 cut(s) | 191, 225, 279 |
| BsiHKAI | GWGCWC | 1 cut(s) | 43 |
| BsiSI | CCGG | 1 cut(s) | 184 |
| BslFI | GGGAC | 1 cut(s) | 166 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 207, 248 |
| BsmAI | GTCTC | 1 cut(s) | 316 |
| BsmFI | GGGAC | 1 cut(s) | 166 |
| BsmI | GAATGC | 1 cut(s) | 292 |
| BsnI | GGCC | 3 cut(s) | 191, 225, 279 |
| Bsp1286I | GDGCHC | 1 cut(s) | 43 |
| Bsp1407I | TGTACA | 1 cut(s) | 135 |
| Bsp143I | GATC | 1 cut(s) | 88 |
| BspANI | GGCC | 3 cut(s) | 191, 225, 279 |
| BspCNI | CTCAG | 1 cut(s) | 286 |
| BspLI | GGNNCC | 2 cut(s) | 182, 226 |
| BspMAI | CTGCAG | 1 cut(s) | 87 |
| BspPI | GGATC | 1 cut(s) | 96 |
| BsrGI | TGTACA | 1 cut(s) | 135 |
| BsrI | ACTGG | 1 cut(s) | 118 |
| BssMI | GATC | 1 cut(s) | 88 |
| BssNAI | GTATAC | 1 cut(s) | 53 |
| Bst1107I | GTATAC | 1 cut(s) | 53 |
| Bst4CI | ACNGT | 2 cut(s) | 45, 180 |
| BstAUI | TGTACA | 1 cut(s) | 135 |
| BstC8I | GCNNGC | 2 cut(s) | 213, 217 |
| BstDEI | CTNAG | 2 cut(s) | 32, 273 |
| BstKTI | GATC | 1 cut(s) | 91 |
| BstMAI | GTCTC | 1 cut(s) | 316 |
| BstMBI | GATC | 1 cut(s) | 88 |
| BstNSI | RCATGY | 1 cut(s) | 215 |
| BstSCI | CCNGG | 1 cut(s) | 182 |
| BstSFI | CTRYAG | 1 cut(s) | 83 |
| BstV1I | GCAGC | 2 cut(s) | 111, 301 |
| BstZ17I | GTATAC | 1 cut(s) | 53 |
| Bsu36I | CCTNAGG | 1 cut(s) | 273 |
| BsuRI | GGCC | 3 cut(s) | 191, 225, 279 |
| Cac8I | GCNNGC | 2 cut(s) | 213, 217 |
| Cfr13I | GGNCC | 3 cut(s) | 180, 224, 277 |
| CseI | GACGC | 1 cut(s) | 208 |
| Csp6I | GTAC | 3 cut(s) | 121, 136, 314 |
| CviAII | CATG | 2 cut(s) | 212, 351 |
| CviJI | RGCY | 5 cut(s) | 130, 170, 191, 225, 279 |
| CviKI_1 | RGCY | 5 cut(s) | 130, 170, 191, 225, 279 |
| CviQI | GTAC | 3 cut(s) | 121, 136, 314 |
| DdeI | CTNAG | 2 cut(s) | 32, 273 |
| DpnI | GATC | 1 cut(s) | 90 |
| DpnII | GATC | 1 cut(s) | 88 |
| Eco47I | GGWCC | 1 cut(s) | 180 |
| Eco81I | CCTNAGG | 1 cut(s) | 273 |
| FaeI | CATG | 2 cut(s) | 215, 354 |
| FaiI | YATR | 6 cut(s) | 53, 194, 208, 213, 339, 352 |
| FaqI | GGGAC | 1 cut(s) | 166 |
| FatI | CATG | 2 cut(s) | 211, 350 |
| FblI | GTMKAC | 2 cut(s) | 52, 114 |
| Fnu4HI | GCNGC | 2 cut(s) | 100, 290 |
| Fsp4HI | GCNGC | 2 cut(s) | 100, 290 |
| FspBI | CTAG | 2 cut(s) | 48, 125 |
| GluI | GCNGC | 2 cut(s) | 100, 290 |
| HaeIII | GGCC | 3 cut(s) | 191, 225, 279 |
| HapII | CCGG | 1 cut(s) | 184 |
| HgaI | GACGC | 1 cut(s) | 208 |
| Hin1II | CATG | 2 cut(s) | 215, 354 |
| HinfI | GANTC | 1 cut(s) | 253 |
| HpaII | CCGG | 1 cut(s) | 184 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 2 cut(s) | 53, 115 |
| Hpy188I | TCNGA | 3 cut(s) | 150, 202, 305 |
| Hpy8I | GTNNAC | 2 cut(s) | 53, 115 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 1 cut(s) | 181 |
| HpyCH4III | ACNGT | 2 cut(s) | 45, 180 |
| HpyCH4V | TGCA | 1 cut(s) | 85 |
| HpyF3I | CTNAG | 2 cut(s) | 32, 273 |
| Hsp92II | CATG | 2 cut(s) | 215, 354 |
| Kzo9I | GATC | 1 cut(s) | 88 |
| LmnI | GCTCC | 1 cut(s) | 38 |
| LpnPI | CCDG | 6 cut(s) | 71, 81, 131, 197, 229, 260 |
| Lsp1109I | GCAGC | 2 cut(s) | 111, 301 |
| MaeI | CTAG | 2 cut(s) | 48, 125 |
| MalI | GATC | 1 cut(s) | 90 |
| MboI | GATC | 1 cut(s) | 88 |
| MboII | GAAGA | 3 cut(s) | 17, 22, 320 |
| MhlI | GDGCHC | 1 cut(s) | 43 |
| MluCI | AATT | 3 cut(s) | 18, 164, 196 |
| MlyI | GAGTC | 1 cut(s) | 262 |
| MnlI | CCTC | 5 cut(s) | 17, 52, 252, 282, 299 |
| MseI | TTAA | 1 cut(s) | 74 |
| MspI | CCGG | 1 cut(s) | 184 |
| MspR9I | CCNGG | 1 cut(s) | 184 |
| Mva1269I | GAATGC | 1 cut(s) | 292 |
| NciI | CCSGG | 1 cut(s) | 184 |
| NdeII | GATC | 1 cut(s) | 88 |
| NlaIII | CATG | 2 cut(s) | 215, 354 |
| NlaIV | GGNNCC | 2 cut(s) | 182, 226 |
| NspI | RCATGY | 1 cut(s) | 215 |
| PaeI | GCATGC | 1 cut(s) | 215 |
| PctI | GAATGC | 1 cut(s) | 292 |
| PfoI | TCCNGGA | 1 cut(s) | 182 |
| PkrI | GCNGC | 2 cut(s) | 101, 291 |
| PleI | GAGTC | 1 cut(s) | 261 |
| PpsI | GAGTC | 1 cut(s) | 261 |
| PspN4I | GGNNCC | 2 cut(s) | 182, 226 |
| PspPI | GGNCC | 3 cut(s) | 180, 224, 277 |
| PstI | CTGCAG | 1 cut(s) | 87 |
| RsaI | GTAC | 3 cut(s) | 122, 137, 315 |
| RsaNI | GTAC | 3 cut(s) | 121, 136, 314 |
| SaqAI | TTAA | 1 cut(s) | 74 |
| SatI | GCNGC | 2 cut(s) | 100, 290 |
| Sau3AI | GATC | 1 cut(s) | 88 |
| Sau96I | GGNCC | 3 cut(s) | 180, 224, 277 |
| SchI | GAGTC | 1 cut(s) | 262 |
| ScrFI | CCNGG | 1 cut(s) | 184 |
| SduI | GDGCHC | 1 cut(s) | 43 |
| SetI | ASST | 3 cut(s) | 126, 132, 310 |
| SfcI | CTRYAG | 1 cut(s) | 83 |
| SinI | GGWCC | 1 cut(s) | 180 |
| SmlI | CTYRAG | 2 cut(s) | 56, 243 |
| SmoI | CTYRAG | 2 cut(s) | 56, 243 |
| SphI | GCATGC | 1 cut(s) | 215 |
| Sse9I | AATT | 3 cut(s) | 18, 164, 196 |
| SspMI | CTAG | 2 cut(s) | 48, 125 |
| StyD4I | CCNGG | 1 cut(s) | 182 |
| TaaI | ACNGT | 2 cut(s) | 45, 180 |
| TasI | AATT | 3 cut(s) | 18, 164, 196 |
| TatI | WGTACW | 1 cut(s) | 135 |
| Tru1I | TTAA | 1 cut(s) | 74 |
| Tru9I | TTAA | 1 cut(s) | 74 |
| TseI | GCWGC | 2 cut(s) | 99, 289 |
| TspDTI | ATGAA | 2 cut(s) | 80, 326 |
| VpaK11BI | GGWCC | 1 cut(s) | 180 |
| XapI | RAATTY | 1 cut(s) | 196 |
| XceI | RCATGY | 1 cut(s) | 215 |
| XmiI | GTMKAC | 2 cut(s) | 52, 114 |
| XspI | CTAG | 2 cut(s) | 48, 125 |