Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0035011 |
| rosa_multiflora | Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070 |
| rosa_rugosa | Rorug07G0045100 |
| rosa_samantha | Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 514 |
| Acc36I | ACCTGC | 1 cut(s) | 514 |
| AccI | GTMKAC | 2 cut(s) | 154, 465 |
| AclWI | GGATC | 1 cut(s) | 198 |
| AcsI | RAATTY | 1 cut(s) | 217 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 228, 269 |
| AgsI | TTSAA | 3 cut(s) | 86, 383, 508 |
| AluBI | AGCT | 1 cut(s) | 329 |
| AluI | AGCT | 1 cut(s) | 329 |
| Alw21I | GWGCWC | 1 cut(s) | 145 |
| AlwI | GGATC | 1 cut(s) | 198 |
| AoxI | GGCC | 3 cut(s) | 210, 244, 298 |
| ApeKI | GCWGC | 1 cut(s) | 310 |
| ApoI | RAATTY | 1 cut(s) | 217 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 45, 438 |
| AspLEI | GCGC | 1 cut(s) | 242 |
| AspS9I | GGNCC | 3 cut(s) | 201, 245, 298 |
| AsuC2I | CCSGG | 1 cut(s) | 205 |
| AsuHPI | GGTGA | 2 cut(s) | 110, 538 |
| AvaII | GGWCC | 1 cut(s) | 201 |
| AxyI | CCTNAGG | 1 cut(s) | 294 |
| Bbv12I | GWGCWC | 1 cut(s) | 145 |
| BbvI | GCAGC | 1 cut(s) | 322 |
| BccI | CCATC | 1 cut(s) | 481 |
| BcnI | CCSGG | 1 cut(s) | 205 |
| BfaI | CTAG | 2 cut(s) | 150, 483 |
| BfmI | CTRYAG | 1 cut(s) | 185 |
| BfuAI | ACCTGC | 1 cut(s) | 514 |
| BisI | GCNGC | 1 cut(s) | 311 |
| BlsI | GCNGC | 1 cut(s) | 312 |
| Bme1390I | CCNGG | 1 cut(s) | 205 |
| Bme18I | GGWCC | 1 cut(s) | 201 |
| BmgT120I | GGNCC | 3 cut(s) | 201, 245, 298 |
| BmiI | GGNNCC | 3 cut(s) | 202, 203, 247 |
| BmrFI | CCNGG | 1 cut(s) | 205 |
| BmsI | GCATC | 2 cut(s) | 396, 549 |
| BpuEI | CTTGAG | 2 cut(s) | 179, 249 |
| BpuMI | CCSGG | 1 cut(s) | 205 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 155, 185, 353, 383 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 228, 269 |
| Bse118I | RCCGGY | 1 cut(s) | 242 |
| Bse21I | CCTNAGG | 1 cut(s) | 294 |
| BseGI | GGATG | 2 cut(s) | 478, 492 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 228, 269 |
| BseMII | CTCAG | 1 cut(s) | 308 |
| BseRI | GAGGAG | 2 cut(s) | 138, 176 |
| BseXI | GCAGC | 1 cut(s) | 322 |
| BshFI | GGCC | 3 cut(s) | 212, 246, 300 |
| BsiHKAI | GWGCWC | 1 cut(s) | 145 |
| BsiSI | CCGG | 2 cut(s) | 205, 243 |
| BslFI | GGGAC | 1 cut(s) | 187 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 228, 269 |
| BsmFI | GGGAC | 1 cut(s) | 187 |
| BsnI | GGCC | 3 cut(s) | 212, 246, 300 |
| Bsp1286I | GDGCHC | 1 cut(s) | 145 |
| Bsp143I | GATC | 2 cut(s) | 190, 544 |
| BspANI | GGCC | 3 cut(s) | 212, 246, 300 |
| BspCNI | CTCAG | 1 cut(s) | 307 |
| BspLI | GGNNCC | 3 cut(s) | 202, 203, 247 |
| BspMAI | CTGCAG | 1 cut(s) | 189 |
| BspMI | ACCTGC | 1 cut(s) | 514 |
| BspPI | GGATC | 1 cut(s) | 198 |
| BsrFI | RCCGGY | 1 cut(s) | 242 |
| BssAI | RCCGGY | 1 cut(s) | 242 |
| BssMI | GATC | 2 cut(s) | 190, 544 |
| BssNAI | GTATAC | 1 cut(s) | 155 |
| Bst1107I | GTATAC | 1 cut(s) | 155 |
| Bst4CI | ACNGT | 2 cut(s) | 147, 463 |
| Bst6I | CTCTTC | 2 cut(s) | 312, 359 |
| BstC8I | GCNNGC | 4 cut(s) | 234, 238, 244, 308 |
| BstDEI | CTNAG | 2 cut(s) | 134, 294 |
| BstF5I | GGATG | 2 cut(s) | 478, 492 |
| BstHHI | GCGC | 1 cut(s) | 242 |
| BstKTI | GATC | 2 cut(s) | 193, 547 |
| BstMBI | GATC | 2 cut(s) | 190, 544 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstSCI | CCNGG | 1 cut(s) | 203 |
| BstSFI | CTRYAG | 1 cut(s) | 185 |
| BstV1I | GCAGC | 1 cut(s) | 322 |
| BstZ17I | GTATAC | 1 cut(s) | 155 |
| Bsu36I | CCTNAGG | 1 cut(s) | 294 |
| BsuRI | GGCC | 3 cut(s) | 212, 246, 300 |
| BtsCI | GGATG | 2 cut(s) | 478, 492 |
| BveI | ACCTGC | 1 cut(s) | 514 |
| Cac8I | GCNNGC | 4 cut(s) | 234, 238, 244, 308 |
| CfoI | GCGC | 1 cut(s) | 242 |
| Cfr10I | RCCGGY | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 3 cut(s) | 201, 245, 298 |
| CviAII | CATG | 1 cut(s) | 233 |
| CviJI | RGCY | 8 cut(s) | 7, 17, 53, 212, 246, 300, 313, 329 |
| CviKI_1 | RGCY | 8 cut(s) | 7, 17, 53, 212, 246, 300, 313, 329 |
| DdeI | CTNAG | 2 cut(s) | 134, 294 |
| DpnI | GATC | 2 cut(s) | 192, 546 |
| DpnII | GATC | 2 cut(s) | 190, 544 |
| Eam1104I | CTCTTC | 2 cut(s) | 312, 359 |
| EarI | CTCTTC | 2 cut(s) | 312, 359 |
| Eco47I | GGWCC | 1 cut(s) | 201 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| Eco81I | CCTNAGG | 1 cut(s) | 294 |
| EcoO109I | RGGNCCY | 1 cut(s) | 201 |
| FaeI | CATG | 1 cut(s) | 236 |
| FaiI | YATR | 5 cut(s) | 155, 215, 229, 234, 568 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 428, 460 |
| FaqI | GGGAC | 1 cut(s) | 187 |
| FatI | CATG | 1 cut(s) | 232 |
| FblI | GTMKAC | 2 cut(s) | 154, 465 |
| Fnu4HI | GCNGC | 1 cut(s) | 311 |
| FokI | GGATG | 2 cut(s) | 485, 499 |
| Fsp4HI | GCNGC | 1 cut(s) | 311 |
| FspBI | CTAG | 2 cut(s) | 150, 483 |
| GlaI | GCGC | 1 cut(s) | 241 |
| GluI | GCNGC | 1 cut(s) | 311 |
| HaeIII | GGCC | 3 cut(s) | 212, 246, 300 |
| HapII | CCGG | 2 cut(s) | 205, 243 |
| HhaI | GCGC | 1 cut(s) | 242 |
| Hin1II | CATG | 1 cut(s) | 236 |
| Hin6I | GCGC | 1 cut(s) | 240 |
| HinP1I | GCGC | 1 cut(s) | 240 |
| HincII | GTYRAC | 2 cut(s) | 409, 466 |
| HindII | GTYRAC | 2 cut(s) | 409, 466 |
| HinfI | GANTC | 3 cut(s) | 41, 274, 410 |
| HpaII | CCGG | 2 cut(s) | 205, 243 |
| HphI | GGTGA | 2 cut(s) | 110, 538 |
| Hpy166II | GTNNAC | 3 cut(s) | 155, 409, 466 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 223 |
| Hpy188III | TCNNGA | 1 cut(s) | 548 |
| Hpy8I | GTNNAC | 3 cut(s) | 155, 409, 466 |
| HpyAV | CCTTC | 3 cut(s) | 202, 352, 377 |
| HpyCH4III | ACNGT | 2 cut(s) | 147, 463 |
| HpyCH4V | TGCA | 2 cut(s) | 81, 187 |
| HpyF3I | CTNAG | 2 cut(s) | 134, 294 |
| Hsp92II | CATG | 1 cut(s) | 236 |
| HspAI | GCGC | 1 cut(s) | 240 |
| KflI | GGGWCCC | 1 cut(s) | 201 |
| KroI | GCCGGC | 1 cut(s) | 242 |
| KroNI | GCCGGC | 1 cut(s) | 244 |
| Kzo9I | GATC | 2 cut(s) | 190, 544 |
| LmnI | GCTCC | 1 cut(s) | 140 |
| Lsp1109I | GCAGC | 1 cut(s) | 322 |
| LweI | GCATC | 2 cut(s) | 396, 549 |
| MaeI | CTAG | 2 cut(s) | 150, 483 |
| MaeIII | GTNAC | 1 cut(s) | 457 |
| MalI | GATC | 2 cut(s) | 192, 546 |
| MboI | GATC | 2 cut(s) | 190, 544 |
| MboII | GAAGA | 5 cut(s) | 98, 329, 376, 496, 524 |
| MhlI | GDGCHC | 1 cut(s) | 145 |
| MluCI | AATT | 4 cut(s) | 23, 117, 217, 574 |
| MlyI | GAGTC | 2 cut(s) | 283, 404 |
| MnlI | CCTC | 7 cut(s) | 116, 119, 154, 273, 303, 360, 448 |
| MroNI | GCCGGC | 1 cut(s) | 242 |
| MroXI | GAANNNNTTC | 2 cut(s) | 45, 438 |
| MseI | TTAA | 3 cut(s) | 113, 176, 573 |
| MspI | CCGG | 2 cut(s) | 205, 243 |
| MspR9I | CCNGG | 1 cut(s) | 205 |
| NaeI | GCCGGC | 1 cut(s) | 244 |
| NciI | CCSGG | 1 cut(s) | 205 |
| NdeII | GATC | 2 cut(s) | 190, 544 |
| NgoMIV | GCCGGC | 1 cut(s) | 242 |
| NlaIII | CATG | 1 cut(s) | 236 |
| NlaIV | GGNNCC | 3 cut(s) | 202, 203, 247 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PaeI | GCATGC | 1 cut(s) | 236 |
| PaqCI | CACCTGC | 1 cut(s) | 514 |
| PdiI | GCCGGC | 1 cut(s) | 244 |
| PdmI | GAANNNNTTC | 2 cut(s) | 45, 438 |
| PfeI | GAWTC | 1 cut(s) | 41 |
| PfoI | TCCNGGA | 1 cut(s) | 203 |
| PkrI | GCNGC | 1 cut(s) | 312 |
| PleI | GAGTC | 2 cut(s) | 282, 404 |
| PpsI | GAGTC | 2 cut(s) | 282, 404 |
| PpuMI | RGGWCCY | 1 cut(s) | 201 |
| Psp5II | RGGWCCY | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 3 cut(s) | 202, 203, 247 |
| PspPI | GGNCC | 3 cut(s) | 201, 245, 298 |
| PspPPI | RGGWCCY | 1 cut(s) | 201 |
| PstI | CTGCAG | 1 cut(s) | 189 |
| SalI | GTCGAC | 1 cut(s) | 464 |
| SaqAI | TTAA | 3 cut(s) | 113, 176, 573 |
| SatI | GCNGC | 1 cut(s) | 311 |
| Sau3AI | GATC | 2 cut(s) | 190, 544 |
| Sau96I | GGNCC | 3 cut(s) | 201, 245, 298 |
| SchI | GAGTC | 2 cut(s) | 283, 404 |
| ScrFI | CCNGG | 1 cut(s) | 205 |
| SduI | GDGCHC | 1 cut(s) | 145 |
| SetI | ASST | 6 cut(s) | 100, 331, 371, 441, 459, 528 |
| SfaNI | GCATC | 2 cut(s) | 396, 549 |
| SfcI | CTRYAG | 1 cut(s) | 185 |
| SinI | GGWCC | 1 cut(s) | 201 |
| SmlI | CTYRAG | 2 cut(s) | 158, 264 |
| SmoI | CTYRAG | 2 cut(s) | 158, 264 |
| SphI | GCATGC | 1 cut(s) | 236 |
| Sse9I | AATT | 4 cut(s) | 23, 117, 217, 574 |
| SspMI | CTAG | 2 cut(s) | 150, 483 |
| StyD4I | CCNGG | 1 cut(s) | 203 |
| TaaI | ACNGT | 2 cut(s) | 147, 463 |
| TaqI | TCGA | 1 cut(s) | 465 |
| TasI | AATT | 4 cut(s) | 23, 117, 217, 574 |
| TfiI | GAWTC | 1 cut(s) | 41 |
| Tru1I | TTAA | 3 cut(s) | 113, 176, 573 |
| Tru9I | TTAA | 3 cut(s) | 113, 176, 573 |
| TseI | GCWGC | 1 cut(s) | 310 |
| TspDTI | ATGAA | 2 cut(s) | 54, 182 |
| TspGWI | ACGGA | 1 cut(s) | 567 |
| VpaK11BI | GGWCC | 1 cut(s) | 201 |
| XapI | RAATTY | 1 cut(s) | 217 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XmiI | GTMKAC | 2 cut(s) | 154, 465 |
| XmnI | GAANNNNTTC | 2 cut(s) | 45, 438 |
| XspI | CTAG | 2 cut(s) | 150, 483 |