Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0035011 |
| rosa_multiflora | Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070 |
| rosa_rugosa | Rorug07G0045100 |
| rosa_samantha | Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 55 |
| AciI | CCGC | 1 cut(s) | 105 |
| AclWI | GGATC | 1 cut(s) | 99 |
| AluBI | AGCT | 1 cut(s) | 152 |
| AluI | AGCT | 1 cut(s) | 152 |
| Alw21I | GWGCWC | 1 cut(s) | 46 |
| AlwI | GGATC | 1 cut(s) | 99 |
| ApeKI | GCWGC | 1 cut(s) | 117 |
| Bbv12I | GWGCWC | 1 cut(s) | 46 |
| BbvI | GCAGC | 1 cut(s) | 104 |
| BfaI | CTAG | 1 cut(s) | 51 |
| BfmI | CTRYAG | 1 cut(s) | 86 |
| BglII | AGATCT | 1 cut(s) | 133 |
| BisI | GCNGC | 1 cut(s) | 118 |
| BlsI | GCNGC | 1 cut(s) | 119 |
| BpuEI | CTTGAG | 1 cut(s) | 80 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 56, 86 |
| Bse3DI | GCAATG | 1 cut(s) | 127 |
| BseMI | GCAATG | 1 cut(s) | 127 |
| BseRI | GAGGAG | 2 cut(s) | 39, 77 |
| BseXI | GCAGC | 1 cut(s) | 104 |
| BsiHKAI | GWGCWC | 1 cut(s) | 46 |
| Bsp1286I | GDGCHC | 1 cut(s) | 46 |
| Bsp143I | GATC | 2 cut(s) | 91, 133 |
| BspACI | CCGC | 1 cut(s) | 105 |
| BspMAI | CTGCAG | 1 cut(s) | 90 |
| BspPI | GGATC | 1 cut(s) | 99 |
| BsrDI | GCAATG | 1 cut(s) | 127 |
| BssMI | GATC | 2 cut(s) | 91, 133 |
| BssNAI | GTATAC | 1 cut(s) | 56 |
| Bst1107I | GTATAC | 1 cut(s) | 56 |
| Bst4CI | ACNGT | 1 cut(s) | 48 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 1 cut(s) | 35 |
| BstKTI | GATC | 2 cut(s) | 94, 136 |
| BstMBI | GATC | 2 cut(s) | 91, 133 |
| BstSFI | CTRYAG | 1 cut(s) | 86 |
| BstV1I | GCAGC | 1 cut(s) | 104 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BstZ17I | GTATAC | 1 cut(s) | 56 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| CviAII | CATG | 2 cut(s) | 126, 139 |
| CviJI | RGCY | 2 cut(s) | 117, 152 |
| CviKI_1 | RGCY | 2 cut(s) | 117, 152 |
| DdeI | CTNAG | 1 cut(s) | 35 |
| DpnI | GATC | 2 cut(s) | 93, 135 |
| DpnII | GATC | 2 cut(s) | 91, 133 |
| EcoT22I | ATGCAT | 1 cut(s) | 127 |
| FaeI | CATG | 2 cut(s) | 129, 142 |
| FaiI | YATR | 4 cut(s) | 56, 111, 127, 140 |
| FatI | CATG | 2 cut(s) | 125, 138 |
| FblI | GTMKAC | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 1 cut(s) | 118 |
| Fsp4HI | GCNGC | 1 cut(s) | 118 |
| FspBI | CTAG | 1 cut(s) | 51 |
| GluI | GCNGC | 1 cut(s) | 118 |
| Hin1II | CATG | 2 cut(s) | 129, 142 |
| HindIII | AAGCTT | 1 cut(s) | 150 |
| HinfI | GANTC | 1 cut(s) | 101 |
| Hpy166II | GTNNAC | 1 cut(s) | 56 |
| Hpy188I | TCNGA | 1 cut(s) | 100 |
| Hpy188III | TCNNGA | 1 cut(s) | 156 |
| Hpy8I | GTNNAC | 1 cut(s) | 56 |
| HpyCH4III | ACNGT | 1 cut(s) | 48 |
| HpyCH4V | TGCA | 3 cut(s) | 88, 120, 125 |
| HpyF3I | CTNAG | 1 cut(s) | 35 |
| Hsp92II | CATG | 2 cut(s) | 129, 142 |
| Kzo9I | GATC | 2 cut(s) | 91, 133 |
| LmnI | GCTCC | 1 cut(s) | 41 |
| LpnPI | CCDG | 1 cut(s) | 74 |
| Lsp1109I | GCAGC | 1 cut(s) | 104 |
| MaeI | CTAG | 1 cut(s) | 51 |
| MalI | GATC | 2 cut(s) | 93, 135 |
| MboI | GATC | 2 cut(s) | 91, 133 |
| MboII | GAAGA | 2 cut(s) | 17, 22 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 46 |
| MluCI | AATT | 1 cut(s) | 18 |
| MlyI | GAGTC | 1 cut(s) | 95 |
| MnlI | CCTC | 3 cut(s) | 17, 20, 55 |
| Mph1103I | ATGCAT | 1 cut(s) | 127 |
| MseI | TTAA | 1 cut(s) | 77 |
| NdeII | GATC | 2 cut(s) | 91, 133 |
| NlaIII | CATG | 2 cut(s) | 129, 142 |
| NsiI | ATGCAT | 1 cut(s) | 127 |
| PkrI | GCNGC | 1 cut(s) | 119 |
| PleI | GAGTC | 1 cut(s) | 95 |
| PpsI | GAGTC | 1 cut(s) | 95 |
| PstI | CTGCAG | 1 cut(s) | 90 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| SaqAI | TTAA | 1 cut(s) | 77 |
| SatI | GCNGC | 1 cut(s) | 118 |
| Sau3AI | GATC | 2 cut(s) | 91, 133 |
| SchI | GAGTC | 1 cut(s) | 95 |
| SduI | GDGCHC | 1 cut(s) | 46 |
| SetI | ASST | 1 cut(s) | 154 |
| SfcI | CTRYAG | 1 cut(s) | 86 |
| SgeI | CNNG | 7 cut(s) | 63, 71, 101, 138, 143, 151, 155 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| Sse9I | AATT | 1 cut(s) | 18 |
| SsiI | CCGC | 1 cut(s) | 105 |
| SspMI | CTAG | 1 cut(s) | 51 |
| TaaI | ACNGT | 1 cut(s) | 48 |
| TasI | AATT | 1 cut(s) | 18 |
| Tru1I | TTAA | 1 cut(s) | 77 |
| Tru9I | TTAA | 1 cut(s) | 77 |
| TseI | GCWGC | 1 cut(s) | 117 |
| TspDTI | ATGAA | 1 cut(s) | 83 |
| XmiI | GTMKAC | 1 cut(s) | 55 |
| XspI | CTAG | 1 cut(s) | 51 |
| Zsp2I | ATGCAT | 1 cut(s) | 127 |