Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010625

Physical Location & Seq

Genomic Coordinates Forward (+)

41812177 .. 41814631

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG165800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTGGAGTGGAGGCCAAAGATTGCTTCCAGATTTATCTGGATTACCATATGGGTTAGCAGTATATCGTTTGATACATATGCTGATATTGCATCTGAGGACACAACTGATAGCTTGAGTAGGAGGGTAAATCAGCAGCAAAACAACAGGCTGAATTACAAGCAATTGAGGGGGCGGTTTGCTGTGAAAGCCATTGCAAAAGACATAGCCTTTGACCAGGAGTTGAGGCGTGCTATGCAAGCCGACATTGATAAGCTCTTGGTCCCAGAGATTGACAGAGGATATATCTCCCTTCAATTTGTTACAAACCCAGAGAAATTGATTGTTGAGTTTGAGAATGCAAGAGTCTTGATTATAGACCAGAAGATTTCAGCTATCAAGGACATAATTCCCCTGTTTGAAAAGACCACTCAGTTGAGAAGCCCTCTGCTTATTATTCCTGAGGATGTCTCTGGGGAGGCTTTGGCAACTCTTGTTGTCAACCAGTTGAGGGGTATCCTTAATGTTGCTGCCATCAAAGCTCCAGGTTTTGGTGAGCGCAGAAAGGCTCTACTCCAAGATATTTCCATTTTGACTGGTACTGAGTTTCAAGCCAGTGATCTTGGTCTACTGATTGAGAACACCACAGTTGAGCAGTTTGGAATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

216

Amino Acids

24.43

Weight (kDa)

5.4

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010625)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035011
rosa_multiflora	Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070
rosa_rugosa	Rorug07G0045100
rosa_samantha	Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	530
AccI	GTMKAC	1 cut(s)	607
AciI	CCGC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	2 cut(s)	490, 530
AgsI	TTSAA	3 cut(s)	296, 401, 590
AjnI	CCWGG	2 cut(s)	216, 523
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AluBI	AGCT	4 cut(s)	114, 256, 374, 521
AluI	AGCT	4 cut(s)	114, 256, 374, 521
Alw26I	GTCTC	1 cut(s)	454
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	136, 509
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	148, 496
BccI	CCATC	1 cut(s)	521
BciT130I	CCWGG	2 cut(s)	218, 525
BciVI	GTATCC	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	2 cut(s)	137, 510
BlsI	GCNGC	2 cut(s)	138, 511
Bme1390I	CCNGG	2 cut(s)	218, 525
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	218, 525
BmsI	GCATC	1 cut(s)	101
BplI	GAGNNNNNCTC	4 cut(s)	409, 441, 434, 466
BpmI	CTGGAG	2 cut(s)	26, 507
BpuEI	CTTGAG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 530
Bse1I	ACTGG	3 cut(s)	484, 580, 594
Bse21I	CCTNAGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	218, 525
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	490, 530
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	4 cut(s)	87, 425, 432, 573
BseNI	ACTGG	3 cut(s)	484, 580, 594
BseXI	GCAGC	2 cut(s)	148, 496
BshFI	GGCC	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	490, 530
BsmAI	GTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	598
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	4 cut(s)	88, 424, 433, 574
BspLI	GGNNCC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	484, 580, 594
BssMI	GATC	1 cut(s)	598
Bst2UI	CCWGG	2 cut(s)	218, 525
Bst4CI	ACNGT	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	231, 240
BstDEI	CTNAG	4 cut(s)	96, 411, 441, 582
BstF5I	GGATG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 188, 235, 239, 518
BstNI	CCWGG	2 cut(s)	218, 525
BstSCI	CCNGG	2 cut(s)	216, 523
BstV1I	GCAGC	2 cut(s)	148, 496
Bsu36I	CCTNAGG	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	2 cut(s)	231, 240
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	579
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	4 cut(s)	96, 411, 441, 582
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	216, 523
FaqI	GGGAC	1 cut(s)	248
FauNDI	CATATG	2 cut(s)	50, 79
FblI	GTMKAC	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	137, 510
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	2 cut(s)	137, 510
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	2 cut(s)	137, 510
GsuI	CTGGAG	2 cut(s)	26, 507
HaeIII	GGCC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	540
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	1 cut(s)	345
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	2 cut(s)	481, 608
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	4 cut(s)	30, 40, 349, 440
Hpy8I	GTNNAC	2 cut(s)	481, 608
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4V	TGCA	4 cut(s)	92, 197, 238, 341
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 188, 235, 239, 518
HpyF3I	CTNAG	4 cut(s)	96, 411, 441, 582
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	2 cut(s)	148, 496
LweI	GCATC	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	1 cut(s)	376
MfeI	CAATTG	1 cut(s)	164
MluCI	AATT	6 cut(s)	154, 164, 296, 317, 387, 642
MlyI	GAGTC	1 cut(s)	354
MseI	TTAA	2 cut(s)	501, 649
MspR9I	CCNGG	2 cut(s)	218, 525
MunI	CAATTG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	2 cut(s)	218, 525
MwoI	GCNNNNNNNGC	5 cut(s)	89, 188, 235, 239, 518
NdeI	CATATG	2 cut(s)	50, 79
NdeII	GATC	1 cut(s)	598
NlaIV	GGNNCC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	343
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	2 cut(s)	138, 511
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	216, 523
PspGI	CCWGG	2 cut(s)	216, 523
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	501, 649
SatI	GCNGC	2 cut(s)	137, 510
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	218, 525
SetI	ASST	5 cut(s)	116, 258, 376, 523, 529
SfaNI	GCATC	1 cut(s)	101
SinI	GGWCC	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	6 cut(s)	154, 164, 296, 317, 387, 642
SsiI	CCGC	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	216, 523
TaaI	ACNGT	1 cut(s)	628
TasI	AATT	6 cut(s)	154, 164, 296, 317, 387, 642
Tru1I	TTAA	2 cut(s)	501, 649
Tru9I	TTAA	2 cut(s)	501, 649
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	2 cut(s)	136, 509
TspRI	CASTG	1 cut(s)	601
Van91I	CCANNNNNTGG	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.