Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010625

Physical Location & Seq

Genomic Coordinates Forward (+)

6682041 .. 6684443

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG085800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTTCCGGTCCATTGCCATCCCTAGTTACTCCATTCTGGTCCGGCCGTCTGGGTCAACTGGTCAACTGATTTTTATGGATTTTGGGGGGGACTTACTCGAAATGGACATCACGTGCGATACGCGTGAGGTAAATCCCCAGTTGCCTCCATTTCTAACAGTCTACTTTTCCCGCTCCCAAAAACCCTTTCCCGAACAACCAACCAGTCCCTCTACCCGAACAACTCGAAATGGACATCACGTAGATAAACTGGCGTCGATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATTTACCTGGTTTCTAGCAAAGAAGAGGTGGGCGCGCGCTTCAAACAGTTTTTGTTTAGATCCAGTTGACTTGAATAACTTTTTTGAGGGAGATGGGAAGATATATGGTTACAAAGGATTGAAGATTACCATATGGGTTAGCAGTATATCATTTGATGCATATGCTGATATTGCATTTGAGAGCACAGCTGATGCAGGCAAACGGATCACAGATTTGAAATCAGCTCTTGATCTTGCTAGTGTTCTCCAGAAAGTTTTTGGTGAGACCCTTGTTGACAGTCAAGAGGAGAGTTCCTTCAAACCATCCATTATCTCAGATGGGGAGGTGTTGCAGCACAAGGCTTCATCTACTTCTGATGTAGAGGTTATTCGCATGGTTGTGGGCAAGACAGCTGCTGGACCCCTTTACAGTCACTTGATTCATCTTGTTGATGGTGCCAGTCCAATTGATCTTCTGGATCCAAGTTGGGAGTTGTATCTCCTGGTCGAGAAGAAAACAGATGAGCAAGGGGGCATCTACAATATATTGCTTGGCTTTACAGCTCTGTATCGTTTTTATCATTATCCTGACAGTTCTCGGTTGCGACTTAGCCAGATCCTGGTATTGCCTCCTTACCAGCATAAGGGTTATGGACGGTACATTCTAGAAGTTCTCAATCATGTTGCAGTATCAGAAGACATCTATGACTTCACAGTAGAAGAACCATTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031974 GO:0031981 GO:0034212 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0061733 GO:0070013 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko05034 map05034

Pfam Domains

Protein Families

Acetyltransf_1 Hat1_N

Protein Analysis

334

Amino Acids

37.61

Weight (kDa)

5.43

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hat1_N	PF10394	111 - 239	1.3e-14	Histone acetyl transferase HAT1 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010625)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035011
rosa_multiflora	Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070
rosa_rugosa	Rorug07G0045100
rosa_samantha	Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	889
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	3 cut(s)	124, 325, 327
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	5 cut(s)	344, 503, 743, 756, 880
AcoI	YGGCCR	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	929
AfiI	CCNNNNNNNGG	2 cut(s)	889, 913
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	333, 364, 412, 508, 589
AjnI	CCWGG	3 cut(s)	296, 771, 888
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	4 cut(s)	479, 515, 683, 833
AluI	AGCT	4 cut(s)	479, 515, 683, 833
Alw21I	GWGCWC	1 cut(s)	476
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	5 cut(s)	344, 503, 743, 756, 880
AlwNI	CAGNNNCTG	2 cut(s)	686, 889
AoxI	GGCC	2 cut(s)	44, 272
ApeKI	GCWGC	2 cut(s)	622, 683
AspLEI	GCGC	3 cut(s)	325, 327, 329
AspS9I	GGNCC	3 cut(s)	9, 40, 689
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	3 cut(s)	9, 40, 689
BamHI	GGATCC	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	725
BbrPI	CACGTG	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	634, 670
BccI	CCATC	5 cut(s)	26, 377, 601, 602, 716
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	3 cut(s)	298, 773, 890
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	4 cut(s)	24, 305, 528, 935
BisI	GCNGC	2 cut(s)	623, 684
BlsI	GCNGC	2 cut(s)	624, 685
Bme1390I	CCNGG	3 cut(s)	298, 773, 890
Bme18I	GGWCC	3 cut(s)	9, 40, 689
BmgT120I	GGNCC	3 cut(s)	9, 40, 689
BmiI	GGNNCC	3 cut(s)	691, 727, 750
BmrFI	CCNGG	3 cut(s)	298, 773, 890
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	5 cut(s)	249, 293, 436, 472, 813
BmuI	ACTGGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	972
BpmI	CTGGAG	2 cut(s)	284, 521
BsaAI	YACGTR	2 cut(s)	114, 241
BsaHI	GRCGYC	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	2 cut(s)	889, 913
Bse1I	ACTGG	6 cut(s)	64, 139, 204, 255, 353, 729
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	298, 773, 890
BseGI	GGATG	2 cut(s)	18, 593
BseLI	CCNNNNNNNGG	2 cut(s)	889, 913
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	6 cut(s)	64, 139, 204, 255, 353, 729
BsePI	GCGCGC	2 cut(s)	323, 325
BseRI	GAGGAG	1 cut(s)	590
BseX3I	CGGCCG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	634, 670
Bsh1236I	CGCG	3 cut(s)	124, 325, 327
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	46, 274
BshNI	GGYRCC	1 cut(s)	725
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	476
BsiSI	CCGG	2 cut(s)	7, 43
BslFI	GGGAC	2 cut(s)	104, 192
BslI	CCNNNNNNNGG	2 cut(s)	889, 913
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	2 cut(s)	104, 192
BsnI	GGCC	2 cut(s)	46, 274
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	6 cut(s)	349, 495, 520, 739, 748, 885
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	46, 274
BspCNI	CTCAG	1 cut(s)	617
BspFNI	CGCG	3 cut(s)	124, 325, 327
BspLI	GGNNCC	3 cut(s)	691, 727, 750
BspPI	GGATC	5 cut(s)	344, 503, 743, 756, 880
BspT107I	GGYRCC	1 cut(s)	725
BspTNI	GGTCTC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	6 cut(s)	64, 139, 204, 255, 353, 729
BssHII	GCGCGC	2 cut(s)	323, 325
BssMI	GATC	6 cut(s)	349, 495, 520, 739, 748, 885
BssNI	GRCGYC	1 cut(s)	254
Bst2UI	CCWGG	3 cut(s)	298, 773, 890
Bst4CI	ACNGT	7 cut(s)	160, 338, 569, 701, 863, 927, 985
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	254
BstBAI	YACGTR	2 cut(s)	114, 241
BstC8I	GCNNGC	3 cut(s)	325, 327, 487
BstDEI	CTNAG	2 cut(s)	604, 878
BstF5I	GGATG	2 cut(s)	18, 593
BstFNI	CGCG	3 cut(s)	124, 325, 327
BstHHI	GCGC	3 cut(s)	325, 327, 329
BstKTI	GATC	6 cut(s)	352, 498, 523, 742, 751, 888
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	6 cut(s)	349, 495, 520, 739, 748, 885
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	3 cut(s)	298, 773, 890
BstSCI	CCNGG	3 cut(s)	296, 771, 888
BstUI	CGCG	3 cut(s)	124, 325, 327
BstV1I	GCAGC	2 cut(s)	634, 670
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	3 cut(s)	349, 748, 885
BstYI	RGATCY	3 cut(s)	349, 748, 885
BstZI	CGGCCG	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	46, 274
BtsCI	GGATG	2 cut(s)	18, 593
Cac8I	GCNNGC	3 cut(s)	325, 327, 487
CaiI	CAGNNNCTG	2 cut(s)	686, 889
CfoI	GCGC	3 cut(s)	325, 327, 329
Cfr13I	GGNCC	3 cut(s)	9, 40, 689
CseI	GACGC	1 cut(s)	243
CsiI	ACCWGGT	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	928
CviAII	CATG	2 cut(s)	664, 950
CviJI	RGCY	9 cut(s)	46, 274, 479, 515, 632, 683, 825, 833, 882
CviKI_1	RGCY	9 cut(s)	46, 274, 479, 515, 632, 683, 825, 833, 882
CviQI	GTAC	1 cut(s)	928
DdeI	CTNAG	2 cut(s)	604, 878
DpnI	GATC	6 cut(s)	351, 497, 522, 741, 750, 887
DpnII	GATC	6 cut(s)	349, 495, 520, 739, 748, 885
EaeI	YGGCCR	1 cut(s)	44
EagI	CGGCCG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
EclXI	CGGCCG	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	3 cut(s)	9, 40, 689
Eco52I	CGGCCG	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	114
EcoRII	CCWGG	3 cut(s)	296, 771, 888
EcoT22I	ATGCAT	1 cut(s)	451
FaeI	CATG	2 cut(s)	667, 953
FaqI	GGGAC	2 cut(s)	104, 192
FatI	CATG	2 cut(s)	663, 949
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	2 cut(s)	422, 451
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	623, 684
FokI	GGATG	2 cut(s)	5, 580
Fsp4HI	GCNGC	2 cut(s)	623, 684
FspBI	CTAG	4 cut(s)	24, 305, 528, 935
GlaI	GCGC	3 cut(s)	324, 326, 328
GluI	GCNGC	2 cut(s)	623, 684
GsuI	CTGGAG	2 cut(s)	284, 521
HaeIII	GGCC	2 cut(s)	46, 274
HapII	CCGG	2 cut(s)	7, 43
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	3 cut(s)	325, 327, 329
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	667, 953
Hin6I	GCGC	3 cut(s)	323, 325, 327
HinP1I	GCGC	3 cut(s)	323, 325, 327
HincII	GTYRAC	4 cut(s)	57, 65, 358, 565
HindII	GTYRAC	4 cut(s)	57, 65, 358, 565
HinfI	GANTC	1 cut(s)	709
HpaII	CCGG	2 cut(s)	7, 43
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	5 cut(s)	57, 65, 163, 358, 565
Hpy188I	TCNGA	3 cut(s)	607, 646, 964
Hpy188III	TCNNGA	9 cut(s)	191, 288, 518, 538, 572, 746, 778, 857, 935
Hpy8I	GTNNAC	5 cut(s)	57, 65, 163, 358, 565
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	595
HpyCH4III	ACNGT	7 cut(s)	160, 338, 569, 701, 863, 927, 985
HpyCH4IV	ACGT	2 cut(s)	113, 240
HpyCH4V	TGCA	6 cut(s)	284, 449, 464, 485, 622, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	2 cut(s)	604, 878
HpySE526I	ACGT	2 cut(s)	113, 240
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	667, 953
HspAI	GCGC	3 cut(s)	323, 325, 327
Kzo9I	GATC	6 cut(s)	349, 495, 520, 739, 748, 885
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	2 cut(s)	634, 670
LweI	GCATC	5 cut(s)	249, 293, 436, 472, 813
MabI	ACCWGGT	1 cut(s)	296
MaeI	CTAG	4 cut(s)	24, 305, 528, 935
MaeII	ACGT	2 cut(s)	113, 240
MaeIII	GTNAC	3 cut(s)	26, 398, 701
MalI	GATC	6 cut(s)	351, 497, 522, 741, 750, 887
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	6 cut(s)	349, 495, 520, 739, 748, 885
MboII	GAAGA	7 cut(s)	325, 400, 424, 734, 793, 977, 1001
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	3 cut(s)	349, 748, 885
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	1 cut(s)	735
MluI	ACGCGT	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	451
MslI	CAYNNNNRTG	1 cut(s)	668
MspA1I	CMGCKG	2 cut(s)	479, 683
MspI	CCGG	2 cut(s)	7, 43
MspR9I	CCNGG	3 cut(s)	298, 773, 890
MunI	CAATTG	1 cut(s)	735
MvaI	CCWGG	3 cut(s)	298, 773, 890
MvnI	CGCG	3 cut(s)	124, 325, 327
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeI	CATATG	2 cut(s)	422, 451
NdeII	GATC	6 cut(s)	349, 495, 520, 739, 748, 885
NlaIII	CATG	2 cut(s)	667, 953
NlaIV	GGNNCC	3 cut(s)	691, 727, 750
NmuCI	GTSAC	1 cut(s)	701
NsiI	ATGCAT	1 cut(s)	451
PauI	GCGCGC	2 cut(s)	323, 325
PfeI	GAWTC	1 cut(s)	709
PflMI	CCANNNNNTGG	1 cut(s)	889
PkrI	GCNGC	2 cut(s)	624, 685
PmaCI	CACGTG	1 cut(s)	114
PmlI	CACGTG	1 cut(s)	114
Ppu21I	YACGTR	2 cut(s)	114, 241
Psp6I	CCWGG	3 cut(s)	296, 771, 888
PspCI	CACGTG	1 cut(s)	114
PspGI	CCWGG	3 cut(s)	296, 771, 888
PspN4I	GGNNCC	3 cut(s)	691, 727, 750
PspPI	GGNCC	3 cut(s)	9, 40, 689
PstNI	CAGNNNCTG	2 cut(s)	686, 889
PsuI	RGATCY	3 cut(s)	349, 748, 885
PteI	GCGCGC	2 cut(s)	323, 325
PvuII	CAGCTG	2 cut(s)	479, 683
RsaI	GTAC	1 cut(s)	929
RsaNI	GTAC	1 cut(s)	928
RseI	CAYNNNNRTG	1 cut(s)	668
SatI	GCNGC	2 cut(s)	623, 684
Sau3AI	GATC	6 cut(s)	349, 495, 520, 739, 748, 885
Sau96I	GGNCC	3 cut(s)	9, 40, 689
ScrFI	CCNGG	3 cut(s)	298, 773, 890
SduI	GDGCHC	1 cut(s)	476
SexAI	ACCWGGT	1 cut(s)	296
SfaNI	GCATC	5 cut(s)	249, 293, 436, 472, 813
SinI	GGWCC	3 cut(s)	9, 40, 689
SmiMI	CAYNNNNRTG	1 cut(s)	668
Sse9I	AATT	1 cut(s)	735
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	4 cut(s)	24, 305, 528, 935
StyD4I	CCNGG	3 cut(s)	296, 771, 888
TaaI	ACNGT	7 cut(s)	160, 338, 569, 701, 863, 927, 985
TaiI	ACGT	2 cut(s)	116, 243
TaqI	TCGA	4 cut(s)	99, 226, 257, 777
TasI	AATT	1 cut(s)	735
TfiI	GAWTC	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	2 cut(s)	622, 683
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	2 cut(s)	624, 701
TspGWI	ACGGA	1 cut(s)	508
Van91I	CCANNNNNTGG	1 cut(s)	889
VpaK11BI	GGWCC	3 cut(s)	9, 40, 689
XbaI	TCTAGA	1 cut(s)	934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	4 cut(s)	24, 305, 528, 935
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.