Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010625

Physical Location & Seq

Genomic Coordinates Forward (+)

10405357 .. 10422016

Gene Structure 16660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTGCTCACCGAGGAAGGGAAGCCATATGCTGTTCATGGAATGCCGAAGTGCGGCCTCTCATGAAGCTCTCAACGTTATTGACTCGGGTCCCGAAGGCCATAAATTCCGAGTTATGGCATGCCTGCGCCGGCCCCCTTGTTTGTTTGCCTCAAGTGGGGAGTCTTGCTTATTACTTCCCTCGTGGCCACAGCGAGCAGCACAAATCCAACTTATCAAAAAACACCTCATCTTGCTTGCTTTTGGCGAAGCTTCTAGCACTAGATAACAAAAAAAGAAAGCTGCAGCTGCAGCTCGTCCTTCCGAAATCTGTTTTCTGCATTTCCTTCTCAAGACCATATCTCCCTCCACAGACCTCTGATCGACTTGATTCCAAAAGCATTTTCATTCGTCTTGAAGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009908 GO:0009942 GO:0010033 GO:0010051 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

135

Amino Acids

15.2

Weight (kDa)

9.77

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010625)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035011
rosa_multiflora	Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070
rosa_rugosa	Rorug07G0045100
rosa_samantha	Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	55
AclI	AACGTT	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	106
AfiI	CCNNNNNNNGG	4 cut(s)	19, 54, 117, 158
AgsI	TTSAA	1 cut(s)	398
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	5 cut(s)	70, 253, 283, 289, 295
AluI	AGCT	5 cut(s)	70, 253, 283, 289, 295
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	4 cut(s)	56, 99, 133, 187
ApeKI	GCWGC	5 cut(s)	199, 283, 286, 289, 292
ApoI	RAATTY	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	91, 134
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	189
BauI	CACGAG	1 cut(s)	183
BbvI	GCAGC	5 cut(s)	211, 270, 276, 298, 304
BfaI	CTAG	2 cut(s)	257, 263
BfmI	CTRYAG	2 cut(s)	284, 290
BisI	GCNGC	6 cut(s)	56, 200, 284, 287, 290, 293
BlsI	GCNGC	6 cut(s)	57, 201, 285, 288, 291, 294
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	2 cut(s)	91, 134
BmiI	GGNNCC	3 cut(s)	92, 93, 136
BoxI	GACNNNNGTC	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	138, 316
BsaJI	CCNNGG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 54, 117, 158
Bse118I	RCCGGY	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	4 cut(s)	19, 54, 117, 158
BseXI	GCAGC	5 cut(s)	211, 270, 276, 298, 304
BshFI	GGCC	4 cut(s)	58, 101, 135, 189
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	4 cut(s)	19, 54, 117, 158
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	4 cut(s)	58, 101, 135, 189
BsoBI	CYCGRG	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	4 cut(s)	58, 101, 135, 189
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	92, 93, 136
BspMAI	CTGCAG	2 cut(s)	288, 294
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	361
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
BstC8I	GCNNGC	5 cut(s)	123, 127, 133, 197, 239
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 292
BstNSI	RCATGY	1 cut(s)	125
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSFI	CTRYAG	2 cut(s)	284, 290
BstV1I	GCAGC	5 cut(s)	211, 270, 276, 298, 304
BsuRI	GGCC	4 cut(s)	58, 101, 135, 189
Cac8I	GCNNGC	5 cut(s)	123, 127, 133, 197, 239
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	91, 134
CviAII	CATG	3 cut(s)	39, 64, 122
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	91
FaeI	CATG	3 cut(s)	42, 67, 125
FaiI	YATR	8 cut(s)	29, 31, 40, 65, 104, 118, 123, 340
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	38, 63, 121
FauNDI	CATATG	1 cut(s)	29
Fnu4HI	GCNGC	6 cut(s)	56, 200, 284, 287, 290, 293
Fsp4HI	GCNGC	6 cut(s)	56, 200, 284, 287, 290, 293
FspBI	CTAG	2 cut(s)	257, 263
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	6 cut(s)	56, 200, 284, 287, 290, 293
HaeIII	GGCC	4 cut(s)	58, 101, 135, 189
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	42, 67, 125
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	85, 163, 371
HpaII	CCGG	1 cut(s)	132
Hpy188I	TCNGA	3 cut(s)	112, 306, 361
Hpy188III	TCNNGA	4 cut(s)	64, 94, 333, 395
HpyAV	CCTTC	4 cut(s)	12, 91, 311, 337
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	3 cut(s)	286, 292, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 292
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	42, 67, 125
HspAI	GCGC	1 cut(s)	129
KflI	GGGWCCC	1 cut(s)	91
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	361
LpnPI	CCDG	2 cut(s)	139, 145
Lsp1109I	GCAGC	5 cut(s)	211, 270, 276, 298, 304
MaeI	CTAG	2 cut(s)	257, 263
MaeII	ACGT	1 cut(s)	77
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	2 cut(s)	106, 403
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	2 cut(s)	79, 172
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	7 cut(s)	8, 69, 162, 192, 238, 357, 367
Mox20I	TGGCCA	1 cut(s)	189
MroNI	GCCGGC	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	406
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	289, 292
NaeI	GCCGGC	1 cut(s)	133
NdeI	CATATG	1 cut(s)	29
NdeII	GATC	1 cut(s)	361
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	3 cut(s)	42, 67, 125
NlaIV	GGNNCC	3 cut(s)	92, 93, 136
NspI	RCATGY	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	125
PagI	TCATGA	1 cut(s)	63
PctI	GAATGC	1 cut(s)	49
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	6 cut(s)	57, 201, 285, 288, 291, 294
PleI	GAGTC	2 cut(s)	79, 171
PpsI	GAGTC	2 cut(s)	79, 171
PpuMI	RGGWCCY	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	89
Psp1406I	AACGTT	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	92, 93, 136
PspPI	GGNCC	2 cut(s)	91, 134
PspPPI	RGGWCCY	1 cut(s)	91
PstI	CTGCAG	2 cut(s)	288, 294
PvuII	CAGCTG	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	6 cut(s)	56, 200, 284, 287, 290, 293
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	2 cut(s)	91, 134
SchI	GAGTC	2 cut(s)	79, 172
SetI	ASST	8 cut(s)	72, 80, 230, 255, 285, 291, 297, 359
SfcI	CTRYAG	2 cut(s)	284, 290
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	153, 331
SmoI	CTYRAG	2 cut(s)	153, 331
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	2 cut(s)	106, 403
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	257, 263
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	364
TasI	AATT	2 cut(s)	106, 403
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TseI	GCWGC	5 cut(s)	199, 283, 286, 289, 292
TspDTI	ATGAA	3 cut(s)	27, 80, 376
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	1 cut(s)	125
XspI	CTAG	2 cut(s)	257, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.