Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010625

Physical Location & Seq

Genomic Coordinates Forward (+)

58483456 .. 58483869

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG348800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGACGAGAAGATGAGAATTGGAGGAGGGTTGCTTAGTGAAGCACAGTCTAGTATACTTGAGGAGATGAAGTTGTTAAAAGAACTGCAGGATCATTCTGGGTCCCGGAAGGCCATAAATTCCGAGTTATGGCATGCCTGCGCCGGCCCCCTTGTTTGTTTGCTTCAAGTGGGGAGTCTTGCTTATTACTTCTCTCAGGGCCACAGCGAGCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009908 GO:0009942 GO:0010033 GO:0010051 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

71

Amino Acids

7.82

Weight (kDa)

5.45

Isoelectric Point (pI)

73.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010625)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035011
rosa_multiflora	Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070
rosa_rugosa	Rorug07G0045100
rosa_samantha	Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	167
AlwI	GGATC	1 cut(s)	99
AoxI	GGCC	3 cut(s)	111, 145, 199
ApoI	RAATTY	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	3 cut(s)	102, 146, 199
AsuC2I	CCSGG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	106
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	3 cut(s)	102, 146, 199
BmiI	GGNNCC	3 cut(s)	103, 104, 148
BmrFI	CCNGG	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	39, 77
BshFI	GGCC	3 cut(s)	113, 147, 201
BsiSI	CCGG	2 cut(s)	106, 144
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	3 cut(s)	113, 147, 201
Bsp143I	GATC	1 cut(s)	91
BspANI	GGCC	3 cut(s)	113, 147, 201
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	103, 104, 148
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssMI	GATC	1 cut(s)	91
BssNAI	GTATAC	1 cut(s)	56
Bst1107I	GTATAC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	48
BstC8I	GCNNGC	4 cut(s)	135, 139, 145, 209
BstDEI	CTNAG	2 cut(s)	35, 195
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	113, 147, 201
Cac8I	GCNNGC	4 cut(s)	135, 139, 145, 209
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	102, 146, 199
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	3 cut(s)	113, 147, 201
CviKI_1	RGCY	3 cut(s)	113, 147, 201
DdeI	CTNAG	2 cut(s)	35, 195
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	102
FaeI	CATG	1 cut(s)	137
FaiI	YATR	4 cut(s)	56, 116, 130, 135
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	113, 147, 201
HapII	CCGG	2 cut(s)	106, 144
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	106, 144
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	35, 195
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	141
KflI	GGGWCCC	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	6 cut(s)	74, 84, 119, 151, 157, 182
MaeI	CTAG	1 cut(s)	51
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	1 cut(s)	22
MluCI	AATT	2 cut(s)	18, 118
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	3 cut(s)	17, 20, 55
MroNI	GCCGGC	1 cut(s)	143
MseI	TTAA	1 cut(s)	77
MspI	CCGG	2 cut(s)	106, 144
MspR9I	CCNGG	1 cut(s)	106
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	1 cut(s)	91
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	3 cut(s)	103, 104, 148
NspI	RCATGY	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	104
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	103, 104, 148
PspPI	GGNCC	3 cut(s)	102, 146, 199
PspPPI	RGGWCCY	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	3 cut(s)	102, 146, 199
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SphI	GCATGC	1 cut(s)	137
Sse9I	AATT	2 cut(s)	18, 118
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	2 cut(s)	18, 118
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.