Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010625

Physical Location & Seq

Genomic Coordinates Forward (+)

7333605 .. 7334664

Gene Structure 1060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG087200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATTTACCTGGTTTCTAGCAAACAAGAGGTGGGAGCGCGCTTCAAACAGTTTTTGTTTACATCCACTTGACTTGAATAACTTTTTTGAGGAAGATGGGAAGATATATGGTTACAAAGGATTGAAGATTACCATATGGGTTAGCAGTATATCATTTGATGCATATGCTGATCTTGCATTTGAGAGCACAGCTGATGCAGGCAAACGGATCACAGATTTGAAATCAGCTCTTGAGGTATGGATTGATTACCAGTTTATATCACCAGTTCTGTTTACTATGTTGTTAGTTCTAATGATTAGTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031974 GO:0031981 GO:0034212 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0061733 GO:0070013 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko05034 map05034

Pfam Domains

Protein Families

Acetyltransf_1 Hat1_N

Protein Analysis

111

Amino Acids

13.01

Weight (kDa)

5.75

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hat1_N	PF10394	22 - 94	4.1e-14	Histone acetyl transferase HAT1 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010625)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035011
rosa_multiflora	Rmu_co8511997.1_g000001 Rmu_sc0001362.1_g000014 Rmu_sc0010150.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124430 Rroxscaffold_4G00289780 Rroxscaffold_4G00312070
rosa_rugosa	Rorug07G0045100
rosa_samantha	Rh1AG348800 Rh1CG225700 Rh2AG087200 Rh2DG085800 Rh2DG094600 Rh4AG035100 Rh4AG055900 Rh4AG165800 Rh4BG054200 Rh7AG188300 Rh7CG325800 Rh7DG293800 Rh7DG422400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AclWI	GGATC	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	75, 106, 154, 250
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	221, 257
AluI	AGCT	2 cut(s)	221, 257
Alw21I	GWGCWC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	69, 71
AsuHPI	GGTGA	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	218
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	3 cut(s)	35, 178, 214
BpmI	CTGGAG	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	280, 293
BseBI	CCWGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	91
BseNI	ACTGG	2 cut(s)	280, 293
BsePI	GCGCGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	2 cut(s)	199, 237
BspANI	GGCC	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	69
BspPI	GGATC	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	280, 293
BssHII	GCGCGC	1 cut(s)	67
BssMI	GATC	2 cut(s)	199, 237
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	69, 229
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	69, 71
BstKTI	GATC	2 cut(s)	202, 240
BstMBI	GATC	2 cut(s)	199, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstUI	CGCG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	69, 229
CfoI	GCGC	2 cut(s)	69, 71
CsiI	ACCWGGT	1 cut(s)	38
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviJI	RGCY	3 cut(s)	16, 221, 257
CviKI_1	RGCY	3 cut(s)	16, 221, 257
DpnI	GATC	2 cut(s)	201, 239
DpnII	GATC	2 cut(s)	199, 237
EcoRII	CCWGG	1 cut(s)	38
EcoT22I	ATGCAT	1 cut(s)	193
FauNDI	CATATG	2 cut(s)	164, 193
FokI	GGATG	1 cut(s)	78
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	2 cut(s)	68, 70
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	69, 71
Hin6I	GCGC	2 cut(s)	67, 69
HinP1I	GCGC	2 cut(s)	67, 69
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	89, 303
Hpy188III	TCNNGA	2 cut(s)	30, 260
Hpy8I	GTNNAC	2 cut(s)	89, 303
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	4 cut(s)	26, 191, 206, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HspAI	GCGC	2 cut(s)	67, 69
Kzo9I	GATC	2 cut(s)	199, 237
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	25, 52, 213, 293, 306
LweI	GCATC	3 cut(s)	35, 178, 214
MabI	ACCWGGT	1 cut(s)	38
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	201, 239
MboI	GATC	2 cut(s)	199, 237
MboII	GAAGA	3 cut(s)	134, 142, 166
MhlI	GDGCHC	1 cut(s)	218
MnlI	CCTC	4 cut(s)	6, 51, 112, 256
Mph1103I	ATGCAT	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeI	CATATG	2 cut(s)	164, 193
NdeII	GATC	2 cut(s)	199, 237
NsiI	ATGCAT	1 cut(s)	193
PauI	GCGCGC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PteI	GCGCGC	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	221
Sau3AI	GATC	2 cut(s)	199, 237
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	5 cut(s)	41, 62, 223, 259, 267
SexAI	ACCWGGT	1 cut(s)	38
SfaNI	GCATC	3 cut(s)	35, 178, 214
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	250
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.