Rmu_sc0000112.1_g000009

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000112.1
OG0005021
Physical Location & Seq
Reverse (-)
53630 .. 56280
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1443 bp
atgaagcgtcgattcaaaatgtgcagcgattcaaatctgacgaagctccaccctctgatcgacgattctctccgtccgtacacagtgatttgtgatcagggagtggtgattggattggattttgagaatgagttggagagtcaatatgtgaagcatctggcctgcaatgttctagctgctgtctccgaattcgtggcggcttcgggaagccactgggatgcctttattcgtttgttgtgtgattgtatggatttggcaatcactgcggcagtttcatgttctacatcgactttggcaactggagctagtgatctttgttctagttcattgagtttaattctcgtgctgaaacctaaggtgaaaaatggtgactggtctgtagcggctggtgttgtttgggtgctacgtgatatactgaagtatttgaagtctgaggatgatgacgagcttgttgaagtgttcattgaggctgttctaatgatcaggctcattgtccaaacttgtccagaatcctcaattcttgtttcatggttgcaacttatccattattactttgaagagcttttgcggcaacccatttctactctggagtgtaatcaggaagattgtttggaaggctctccatttctatccagtgtttctgattcagaagtaaatagtctgtcttctcgccatctgcaaagacaggctgtgttcctttttctgaggtgttcttttagtttgattaactcaaatggaggcactaacagaaaatgtgcttgtgcaagttggaatttatgcttggactatgactcaaatgcagagttgcagtgttgtggaagaaaggaaggactattggagcttaataactggcttcaaggacatcttccaactgatatgtttgtggaccatgaaatgtattttgaaaaatgtgcagactttgccaaatccttcctccaactacatatcaaagaggtgccccattctcatctgaattcactctatagttttgaaattttaagctatgaccatcaggtgcttcttgattaccttattacaaaagatactggaatcagttgtgcagaatatcttttaaggtgcttgcgtaaagtgtgtgattcatggagcttatttgtggaatttccaccgagtggacaagctattaatcgatcatcttgcaagaaaagaaaagtttcattgaatgggtcgagtttctgtggagcagatttgtttgcgctagtgaaagactctggaggtttgtttcttgaagatgaatgtgacgatgaaaacaaatatgatttcaagcacactcgagagaatttccaaaaagccaaagagtgcttaatttcgttgaaaaattcgattgaaagtctccaccaaaagaatctatttccctacaatcctaatgctcttttgaaccgcttaatgaggtttcaggaactctgtttcgaggaggaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LINES_C LINES_N

Protein Analysis

480

Amino Acids

54.4

Weight (kDa)

5.16

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LINES_C PF14695 437 - 473 2.8e-15 Lines C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 955
AccB7I CCANNNNNTGG 1 cut(s) 1130
AciI CCGC 5 cut(s) 197, 266, 383, 568, 1399
AcsI RAATTY 7 cut(s) 188, 772, 973, 993, 1118, 1297, 1336
AcuI CTGAAG 1 cut(s) 437
AdeI CACNNNGTG 1 cut(s) 1130
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 1130
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AluBI AGCT 9 cut(s) 46, 176, 305, 448, 562, 841, 1002, 1107, 1139
AluI AGCT 9 cut(s) 46, 176, 305, 448, 562, 841, 1002, 1107, 1139
Alw26I GTCTC 2 cut(s) 187, 1355
Ama87I CYCGRG 1 cut(s) 1290
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 2 cut(s) 24, 176
ApoI RAATTY 7 cut(s) 188, 772, 973, 993, 1118, 1297, 1336
AseI ATTAAT 1 cut(s) 1143
Asp700I GAANNNNTTC 1 cut(s) 1171
AspLEI GCGC 1 cut(s) 1216
AspS9I GGNCC 1 cut(s) 886
AsuHPI GGTGA 3 cut(s) 118, 370, 380
AvaI CYCGRG 1 cut(s) 1290
AvaII GGWCC 1 cut(s) 886
AxyI CCTNAGG 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 960
BanI GGYRCC 1 cut(s) 955
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 657
BbvI GCAGC 2 cut(s) 36, 163
BccI CCATC 2 cut(s) 681, 1017
BcgI CGANNNNNNTGC 2 cut(s) 1137, 1171
BclI TGATCA 2 cut(s) 94, 480
BcoDI GTCTC 2 cut(s) 187, 1355
BfaI CTAG 4 cut(s) 173, 306, 321, 1217
BfmI CTRYAG 2 cut(s) 378, 982
BisI GCNGC 6 cut(s) 25, 177, 198, 267, 384, 569
BlsI GCNGC 6 cut(s) 26, 178, 199, 268, 385, 570
Bme18I GGWCC 1 cut(s) 886
BmeT110I CYCGRG 1 cut(s) 1290
BmgT120I GGNCC 1 cut(s) 886
BmiI GGNNCC 1 cut(s) 957
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 163, 208
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 657
BpmI CTGGAG 3 cut(s) 321, 608, 1251
Bsa29I ATCGAT 1 cut(s) 1147
BsaAI YACGTR 1 cut(s) 407
BsaBI GATNNNNATC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 1130
Bse1I ACTGG 6 cut(s) 218, 304, 377, 633, 854, 1051
Bse21I CCTNAGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 1147
BseGI GGATG 2 cut(s) 223, 442
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 1130
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 423, 695
BseNI ACTGG 6 cut(s) 218, 304, 377, 633, 854, 1051
BseSI GKGCMC 1 cut(s) 960
BseXI GCAGC 2 cut(s) 36, 163
BsgI GTGCAG 3 cut(s) 43, 933, 1080
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 955
BshVI ATCGAT 1 cut(s) 1147
BsiHKCI CYCGRG 1 cut(s) 1290
BslI CCNNNNNNNGG 1 cut(s) 1130
BsmAI GTCTC 2 cut(s) 187, 1355
BsnI GGCC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 1290
Bsp1286I GDGCHC 1 cut(s) 960
Bsp143I GATC 5 cut(s) 57, 94, 310, 480, 1148
BspACI CCGC 5 cut(s) 197, 266, 383, 568, 1399
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 424, 696
BspDI ATCGAT 1 cut(s) 1147
BspLI GGNNCC 1 cut(s) 957
BspQI GCTCTTC 1 cut(s) 552
BspT107I GGYRCC 1 cut(s) 955
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 6 cut(s) 218, 304, 377, 633, 854, 1051
BssMI GATC 5 cut(s) 57, 94, 310, 480, 1148
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 552
BstAPI GCANNNNNTGC 2 cut(s) 263, 920
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 163, 1082
BstDEI CTNAG 3 cut(s) 354, 432, 704
BstF5I GGATG 2 cut(s) 223, 442
BstHHI GCGC 1 cut(s) 1216
BstKTI GATC 5 cut(s) 60, 97, 313, 483, 1151
BstMAI GTCTC 2 cut(s) 187, 1355
BstMBI GATC 5 cut(s) 57, 94, 310, 480, 1148
BstMWI GCNNNNNNNGC 4 cut(s) 263, 302, 568, 920
BstSFI CTRYAG 2 cut(s) 378, 982
BstSLI GKGCMC 1 cut(s) 960
BstV1I GCAGC 2 cut(s) 36, 163
BstV2I GAAGAC 1 cut(s) 657
Bsu15I ATCGAT 1 cut(s) 1147
Bsu36I CCTNAGG 1 cut(s) 354
BsuRI GGCC 1 cut(s) 161
BsuTUI ATCGAT 1 cut(s) 1147
BtsCI GGATG 2 cut(s) 223, 442
BtsI GCAGTG 2 cut(s) 261, 815
BtsIMutI CAGTG 5 cut(s) 90, 211, 261, 640, 815
Cac8I GCNNGC 2 cut(s) 163, 1082
CfoI GCGC 1 cut(s) 1216
Cfr13I GGNCC 1 cut(s) 886
ClaI ATCGAT 1 cut(s) 1147
Csp6I GTAC 1 cut(s) 79
CviAII CATG 4 cut(s) 276, 528, 890, 1101
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 3 cut(s) 354, 432, 704
DpnI GATC 5 cut(s) 59, 96, 312, 482, 1150
DpnII GATC 5 cut(s) 57, 94, 310, 480, 1148
DraIII CACNNNGTG 1 cut(s) 1130
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 886
Eco57I CTGAAG 1 cut(s) 437
Eco81I CCTNAGG 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 1290
EcoRI GAATTC 2 cut(s) 188, 973
FaeI CATG 4 cut(s) 279, 531, 893, 1104
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FatI CATG 4 cut(s) 275, 527, 889, 1100
FbaI TGATCA 2 cut(s) 94, 480
Fnu4HI GCNGC 6 cut(s) 25, 177, 198, 267, 384, 569
FokI GGATG 2 cut(s) 230, 449
Fsp4HI GCNGC 6 cut(s) 25, 177, 198, 267, 384, 569
FspBI CTAG 4 cut(s) 173, 306, 321, 1217
GlaI GCGC 1 cut(s) 1215
GluI GCNGC 6 cut(s) 25, 177, 198, 267, 384, 569
GsuI CTGGAG 3 cut(s) 321, 608, 1251
HaeIII GGCC 1 cut(s) 161
HhaI GCGC 1 cut(s) 1216
Hin1II CATG 4 cut(s) 279, 531, 893, 1104
Hin6I GCGC 1 cut(s) 1214
HinP1I GCGC 1 cut(s) 1214
HphI GGTGA 3 cut(s) 118, 370, 380
Hpy166II GTNNAC 3 cut(s) 81, 886, 1133
Hpy188I TCNGA 8 cut(s) 39, 57, 187, 433, 643, 649, 705, 972
Hpy188III TCNNGA 9 cut(s) 204, 506, 587, 599, 1022, 1230, 1244, 1292, 1415
Hpy8I GTNNAC 3 cut(s) 81, 886, 1133
Hpy99I CGWCG 2 cut(s) 12, 65
HpyAV CCTTC 3 cut(s) 608, 821, 940
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 406
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 302, 568, 920
HpyF3I CTNAG 3 cut(s) 354, 432, 704
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 4 cut(s) 279, 531, 893, 1104
HspAI GCGC 1 cut(s) 1214
Ksp22I TGATCA 2 cut(s) 94, 480
Kzo9I GATC 5 cut(s) 57, 94, 310, 480, 1148
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 5 cut(s) 51, 302, 838, 1104, 1199
Lsp1109I GCAGC 2 cut(s) 36, 163
LweI GCATC 2 cut(s) 163, 208
MaeI CTAG 4 cut(s) 173, 306, 321, 1217
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 368, 1256
MalI GATC 5 cut(s) 59, 96, 312, 482, 1150
MboI GATC 5 cut(s) 57, 94, 310, 480, 1148
MboII GAAGA 6 cut(s) 569, 614, 657, 831, 857, 1259
MhlI GDGCHC 1 cut(s) 960
MlyI GAGTC 3 cut(s) 148, 785, 1220
MmeI TCCRAC 4 cut(s) 114, 749, 893, 961
MroXI GAANNNNTTC 1 cut(s) 1171
MseI TTAA 8 cut(s) 335, 726, 843, 998, 1073, 1143, 1322, 1403
MslI CAYNNNNRTG 1 cut(s) 216
MwoI GCNNNNNNNGC 4 cut(s) 263, 302, 568, 920
NdeII GATC 5 cut(s) 57, 94, 310, 480, 1148
NlaIII CATG 4 cut(s) 279, 531, 893, 1104
NlaIV GGNNCC 1 cut(s) 957
NmuCI GTSAC 2 cut(s) 368, 1256
PaeR7I CTCGAG 1 cut(s) 1290
PciSI GCTCTTC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 1171
PfeI GAWTC 8 cut(s) 12, 29, 65, 509, 644, 1050, 1097, 1363
PflMI CCANNNNNTGG 1 cut(s) 1130
PkrI GCNGC 6 cut(s) 26, 178, 199, 268, 385, 570
PleI GAGTC 3 cut(s) 147, 785, 1220
PpsI GAGTC 3 cut(s) 147, 785, 1220
Ppu21I YACGTR 1 cut(s) 407
PshBI ATTAAT 1 cut(s) 1143
PspN4I GGNNCC 1 cut(s) 957
PspPI GGNCC 1 cut(s) 886
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 8 cut(s) 335, 726, 843, 998, 1073, 1143, 1322, 1403
SatI GCNGC 6 cut(s) 25, 177, 198, 267, 384, 569
Sau3AI GATC 5 cut(s) 57, 94, 310, 480, 1148
Sau96I GGNCC 1 cut(s) 886
SchI GAGTC 3 cut(s) 148, 785, 1220
SduI GDGCHC 1 cut(s) 960
SfaNI GCATC 2 cut(s) 163, 208
SfcI CTRYAG 2 cut(s) 378, 982
Sfr274I CTCGAG 1 cut(s) 1290
SinI GGWCC 1 cut(s) 886
SlaI CTCGAG 1 cut(s) 1290
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 1290
SmoI CTYRAG 1 cut(s) 1290
SsiI CCGC 5 cut(s) 197, 266, 383, 568, 1399
SspMI CTAG 4 cut(s) 173, 306, 321, 1217
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 409
TaqI TCGA 8 cut(s) 10, 60, 287, 1147, 1187, 1291, 1340, 1428
TauI GCSGC 4 cut(s) 200, 269, 386, 571
TfiI GAWTC 8 cut(s) 12, 29, 65, 509, 644, 1050, 1097, 1363
Tru1I TTAA 8 cut(s) 335, 726, 843, 998, 1073, 1143, 1322, 1403
Tru9I TTAA 8 cut(s) 335, 726, 843, 998, 1073, 1143, 1322, 1403
TscAI CASTG 5 cut(s) 90, 218, 268, 640, 815
TseFI GTSAC 2 cut(s) 368, 1256
TseI GCWGC 2 cut(s) 24, 176
Tsp45I GTSAC 2 cut(s) 368, 1256
TspGWI ACGGA 2 cut(s) 62, 66
TspRI CASTG 5 cut(s) 90, 218, 268, 640, 815
Van91I CCANNNNNTGG 1 cut(s) 1130
VpaK11BI GGWCC 1 cut(s) 886
VspI ATTAAT 1 cut(s) 1143
XapI RAATTY 7 cut(s) 188, 772, 973, 993, 1118, 1297, 1336
XcmI CCANNNNNNNNNTGG 1 cut(s) 583
XhoI CTCGAG 1 cut(s) 1290
XmnI GAANNNNTTC 1 cut(s) 1171
XspI CTAG 4 cut(s) 173, 306, 321, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.