Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000334.1

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Reverse (-)

59230 .. 61605

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgatgaggttggcgcgcgattgtgactctgccccctgttccatcattggttgtggcggaggacatgggcccaatcctgcaagcttgggtgggtttagagggacacttatctatattactagcattgaccttatccttatcccagcgtttagactgactcttgaactttgtgagttccagcttcacgccgggttggcattcgcctttagcgccctctttaggtcgttaaattttgatagcagtgtggccacttgtttctgggtttcttgctctcattctctatttgccttgctctcgttctttcttgctagtgccaattctagtttagcggcaagtgggttagggattgacaaactggtccgcttgctcgtcgaccatttccccgctaccgttagtcattgtggattatggtgggatgaccctctgcccaaagatttccacagacgacgccaatgcgtcggagaaccccatgagggaaatcaaggtctagaagctcgtcctcaacatcttcgtctgcgagagcggcgatcgtctcaccaaggccgccaaggtcttggagcaactcagcggccagactcctctcggtacactgtgaggtctttcagaatcatgcgtaatgagaagatcgcttgctatgttactgttaggggagagaaggcaatgtcactgttggagagtgggctgaaggtgaaggagtatgagcttttgagtaagaacttcagtgatactggctgctttggattcgttattcaggagcatattgatcttggaattaaatttcttcaactcttcaaaaaaggtgacattgagctcccacaacttcaggctgccattgagctgctagatgctttctgttatgctatttgggttgggaaagggtggcgtgtggggcccacacgcagtcacctgttgcggcggatgggggctcgtccggccattccaagcattctagtttggttgagtatattgttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

324

Amino Acids

36.08

Weight (kDa)

9.11

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5_C	PF00673	208 - 260	2.5e-07	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccBSI	CCGCTC	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	2 cut(s)	16, 18
AciI	CCGC	9 cut(s)	57, 329, 361, 384, 523, 544, 568, 913, 916
AcoI	YGGCCR	3 cut(s)	246, 569, 933
AcsI	RAATTY	2 cut(s)	229, 776
AcuI	CTGAAG	3 cut(s)	703, 704, 806
AcyI	GRCGYC	1 cut(s)	448
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	2 cut(s)	219, 473
AgsI	TTSAA	3 cut(s)	164, 785, 793
AluBI	AGCT	6 cut(s)	84, 181, 494, 703, 811, 838
AluI	AGCT	6 cut(s)	84, 181, 494, 703, 811, 838
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	1 cut(s)	537
AoxI	GGCC	6 cut(s)	68, 246, 541, 569, 890, 933
ApaI	GGGCCC	2 cut(s)	72, 894
ApeKI	GCWGC	3 cut(s)	732, 827, 838
ApoI	RAATTY	2 cut(s)	229, 776
AspLEI	GCGC	3 cut(s)	16, 18, 212
AspS9I	GGNCC	5 cut(s)	68, 69, 358, 890, 891
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	4 cut(s)	527, 700, 812, 896
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	2 cut(s)	72, 894
BalI	TGGCCA	1 cut(s)	248
BanII	GRGCYC	4 cut(s)	72, 813, 894, 928
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	3 cut(s)	719, 814, 825
BccI	CCATC	2 cut(s)	50, 913
BcgI	CGANNNNNNTGC	2 cut(s)	435, 469
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	6 cut(s)	120, 309, 321, 488, 842, 950
BfoI	RGCGCY	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	194
BisI	GCNGC	8 cut(s)	330, 524, 544, 569, 733, 828, 839, 914
BlsI	GCNGC	8 cut(s)	331, 525, 545, 570, 734, 829, 840, 915
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	5 cut(s)	68, 69, 358, 890, 891
BmiI	GGNNCC	3 cut(s)	70, 891, 892
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	835
BpuMI	CCSGG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	448
BsaJI	CCNNGG	2 cut(s)	538, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 473
Bse1I	ACTGG	2 cut(s)	360, 733
Bse3DI	GCAATG	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	538, 547
BseGI	GGATG	2 cut(s)	421, 924
BseLI	CCNNNNNNNGG	2 cut(s)	219, 473
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	2 cut(s)	360, 733
BsePI	GCGCGC	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	568
BseSI	GKGCMC	2 cut(s)	72, 894
BseXI	GCAGC	3 cut(s)	719, 814, 825
BseYI	CCCAGC	1 cut(s)	142
Bsh1236I	CGCG	2 cut(s)	16, 18
Bsh1285I	CGRYCG	1 cut(s)	530
BshFI	GGCC	6 cut(s)	70, 248, 543, 571, 892, 935
BsiEI	CGRYCG	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	813
BsiSI	CCGG	2 cut(s)	189, 932
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	219, 473
BsmAI	GTCTC	1 cut(s)	537
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	2 cut(s)	197, 945
BsnI	GGCC	6 cut(s)	70, 248, 543, 571, 892, 935
Bsp120I	GGGCCC	2 cut(s)	68, 890
Bsp1286I	GDGCHC	4 cut(s)	72, 813, 894, 928
Bsp143I	GATC	3 cut(s)	527, 624, 763
BspACI	CCGC	9 cut(s)	57, 329, 361, 384, 523, 544, 568, 913, 916
BspANI	GGCC	6 cut(s)	70, 248, 543, 571, 892, 935
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	2 cut(s)	16, 18
BspLI	GGNNCC	3 cut(s)	70, 891, 892
BsrBI	CCGCTC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	360, 733
BssECI	CCNNGG	2 cut(s)	538, 547
BssHII	GCGCGC	1 cut(s)	14
BssMI	GATC	3 cut(s)	527, 624, 763
BssNI	GRCGYC	1 cut(s)	448
BssT1I	CCWWGG	2 cut(s)	538, 547
Bst4CI	ACNGT	4 cut(s)	391, 592, 643, 669
Bst6I	CTCTTC	1 cut(s)	794
BstACI	GRCGYC	1 cut(s)	448
BstC8I	GCNNGC	4 cut(s)	16, 82, 365, 631
BstDEI	CTNAG	1 cut(s)	564
BstF5I	GGATG	2 cut(s)	421, 924
BstFNI	CGCG	2 cut(s)	16, 18
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	3 cut(s)	16, 18, 212
BstKTI	GATC	3 cut(s)	530, 627, 766
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	3 cut(s)	527, 624, 763
BstMCI	CGRYCG	1 cut(s)	530
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 209, 523, 889, 932
BstSCI	CCNGG	1 cut(s)	188
BstSLI	GKGCMC	2 cut(s)	72, 894
BstUI	CGCG	2 cut(s)	16, 18
BstV1I	GCAGC	3 cut(s)	719, 814, 825
BstXI	CCANNNNNNTGG	1 cut(s)	554
BsuRI	GGCC	6 cut(s)	70, 248, 543, 571, 892, 935
BtsCI	GGATG	2 cut(s)	421, 924
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	4 cut(s)	247, 588, 665, 727
Cac8I	GCNNGC	4 cut(s)	16, 82, 365, 631
CfoI	GCGC	3 cut(s)	16, 18, 212
Cfr13I	GGNCC	5 cut(s)	68, 69, 358, 890, 891
CseI	GACGC	2 cut(s)	445, 456
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	3 cut(s)	65, 470, 610
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	3 cut(s)	529, 626, 765
DpnII	GATC	3 cut(s)	527, 624, 763
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	3 cut(s)	246, 569, 933
Eam1104I	CTCTTC	1 cut(s)	794
EarI	CTCTTC	1 cut(s)	794
EciI	GGCGGA	2 cut(s)	72, 931
Ecl136II	GAGCTC	1 cut(s)	811
Eco130I	CCWWGG	2 cut(s)	538, 547
Eco24I	GRGCYC	4 cut(s)	72, 813, 894, 928
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	811
Eco57I	CTGAAG	3 cut(s)	703, 704, 806
EcoICRI	GAGCTC	1 cut(s)	811
EcoO109I	RGGNCCY	1 cut(s)	890
EcoT14I	CCWWGG	2 cut(s)	538, 547
EcoT38I	GRGCYC	4 cut(s)	72, 813, 894, 928
ErhI	CCWWGG	2 cut(s)	538, 547
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	3 cut(s)	68, 473, 613
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	3 cut(s)	64, 469, 609
FauI	CCCGC	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	8 cut(s)	330, 524, 544, 569, 733, 828, 839, 914
FokI	GGATG	2 cut(s)	428, 931
FriOI	GRGCYC	4 cut(s)	72, 813, 894, 928
Fsp4HI	GCNGC	8 cut(s)	330, 524, 544, 569, 733, 828, 839, 914
FspBI	CTAG	6 cut(s)	120, 309, 321, 488, 842, 950
GlaI	GCGC	3 cut(s)	15, 17, 211
GluI	GCNGC	8 cut(s)	330, 524, 544, 569, 733, 828, 839, 914
GsaI	CCCAGC	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	6 cut(s)	70, 248, 543, 571, 892, 935
HapII	CCGG	2 cut(s)	189, 932
HgaI	GACGC	2 cut(s)	445, 456
HhaI	GCGC	3 cut(s)	16, 18, 212
Hin1I	GRCGYC	1 cut(s)	448
Hin1II	CATG	3 cut(s)	68, 473, 613
Hin6I	GCGC	3 cut(s)	14, 16, 210
HinP1I	GCGC	3 cut(s)	14, 16, 210
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	5 cut(s)	26, 157, 575, 606, 741
HpaII	CCGG	2 cut(s)	189, 932
HphI	GGTGA	4 cut(s)	527, 700, 812, 896
Hpy166II	GTNNAC	2 cut(s)	373, 588
Hpy188I	TCNGA	2 cut(s)	461, 605
Hpy188III	TCNNGA	3 cut(s)	161, 488, 752
Hpy8I	GTNNAC	2 cut(s)	373, 588
Hpy99I	CGWCG	3 cut(s)	374, 450, 461
HpyAV	CCTTC	3 cut(s)	649, 679, 685
HpyCH4III	ACNGT	4 cut(s)	391, 592, 643, 669
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 209, 523, 889, 932
HpyF3I	CTNAG	1 cut(s)	564
Hsp92I	GRCGYC	1 cut(s)	448
Hsp92II	CATG	3 cut(s)	68, 473, 613
HspAI	GCGC	3 cut(s)	14, 16, 210
Kzo9I	GATC	3 cut(s)	527, 624, 763
LmnI	GCTCC	3 cut(s)	557, 754, 816
Lsp1109I	GCAGC	3 cut(s)	719, 814, 825
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	6 cut(s)	120, 309, 321, 488, 842, 950
MaeIII	GTNAC	5 cut(s)	23, 637, 663, 800, 902
MalI	GATC	3 cut(s)	529, 626, 765
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	3 cut(s)	527, 624, 763
MboII	GAAGA	4 cut(s)	500, 634, 773, 781
MhlI	GDGCHC	4 cut(s)	72, 813, 894, 928
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	4 cut(s)	229, 316, 771, 776
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	3 cut(s)	20, 151, 569
MmeI	TCCRAC	2 cut(s)	439, 651
MnlI	CCTC	8 cut(s)	53, 92, 224, 432, 466, 510, 588, 589
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	2 cut(s)	227, 774
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	568
MspI	CCGG	2 cut(s)	189, 932
MspR9I	CCNGG	1 cut(s)	190
Mva1269I	GAATGC	2 cut(s)	197, 945
MvnI	CGCG	2 cut(s)	16, 18
MwoI	GCNNNNNNNGC	5 cut(s)	194, 209, 523, 889, 932
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	3 cut(s)	527, 624, 763
NlaIII	CATG	3 cut(s)	68, 473, 613
NlaIV	GGNNCC	3 cut(s)	70, 891, 892
NmuCI	GTSAC	4 cut(s)	23, 663, 800, 902
PauI	GCGCGC	1 cut(s)	14
PctI	GAATGC	2 cut(s)	197, 945
PfeI	GAWTC	2 cut(s)	606, 741
PkrI	GCNGC	8 cut(s)	331, 525, 545, 570, 734, 829, 840, 915
Ple19I	CGATCG	1 cut(s)	530
PleI	GAGTC	3 cut(s)	20, 151, 569
PpsI	GAGTC	3 cut(s)	20, 151, 569
Psp124BI	GAGCTC	1 cut(s)	813
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	70, 891, 892
PspOMI	GGGCCC	2 cut(s)	68, 890
PspPI	GGNCC	5 cut(s)	68, 69, 358, 890, 891
PteI	GCGCGC	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	530
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SacI	GAGCTC	1 cut(s)	813
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	227, 774
SatI	GCNGC	8 cut(s)	330, 524, 544, 569, 733, 828, 839, 914
Sau3AI	GATC	3 cut(s)	527, 624, 763
Sau96I	GGNCC	5 cut(s)	68, 69, 358, 890, 891
SchI	GAGTC	3 cut(s)	20, 151, 569
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	4 cut(s)	72, 813, 894, 928
SfaNI	GCATC	1 cut(s)	835
SinI	GGWCC	1 cut(s)	358
Sse9I	AATT	4 cut(s)	229, 316, 771, 776
SsiI	CCGC	9 cut(s)	57, 329, 361, 384, 523, 544, 568, 913, 916
SspMI	CTAG	6 cut(s)	120, 309, 321, 488, 842, 950
SstI	GAGCTC	1 cut(s)	813
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	2 cut(s)	538, 547
TaaI	ACNGT	4 cut(s)	391, 592, 643, 669
TaqI	TCGA	1 cut(s)	372
TasI	AATT	4 cut(s)	229, 316, 771, 776
TauI	GCSGC	5 cut(s)	332, 526, 546, 571, 916
TfiI	GAWTC	2 cut(s)	606, 741
Tru1I	TTAA	2 cut(s)	227, 774
Tru9I	TTAA	2 cut(s)	227, 774
TscAI	CASTG	4 cut(s)	247, 595, 672, 727
TseFI	GTSAC	4 cut(s)	23, 663, 800, 902
TseI	GCWGC	3 cut(s)	732, 827, 838
Tsp45I	GTSAC	4 cut(s)	23, 663, 800, 902
TspRI	CASTG	4 cut(s)	247, 595, 672, 727
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	2 cut(s)	229, 776
XbaI	TCTAGA	1 cut(s)	487
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	6 cut(s)	120, 309, 321, 488, 842, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.