Rmu_sc0000441.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000441.1
OG0002389
Physical Location & Seq
Forward (+)
78300 .. 83751
5452 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1464 bp
atggtaactgtctgtctaacatgtggtgatagaggcttcgaaaaggttacggtaaactgttcaaagtgtcaagatagtccacaacatatttattgccttgacgtgacaccagaaaaatattttgagaaagattttacttgggtttgtgacgagtgtaaaccagtctctatcccttcgaaaagtcatcataacgaaaactctgagaagaagaagaggaagaagttgaaaaagaagagtaatagaaagaaattcactgggtctgtggctaaaacgaaggttcagatatgtgaaggtagccctcctgaacacgaggctaagggcagtgaaaattgtgataatgttctaaagattggtaatcggtcgggacaggttcttgaagatcaggtcaattcctcccatgatctggccgcatctttaaagacccctcaaatagcggctagtgaccctttgaaaatcaatgaagactgttatgttgctgcacagcctattattgatccaacttggaggggaagtctaagcataatgaacaaagacttcagcatcattagtggacttgtagctcatctttcaagcttggcatgtgctaaagtgtttgaagaggcgaaattgctaccaatgctgctgtttccagatttggtttgtagggttgatgtgtggccaaaggcgtttgagagctgcggaccaagtgatcagagtattgctctttatttttttcctgacagcaaaagtaatgagaaggattttgataacctagtggttagcatgatccaagaggatcttgctatgagggcagtgctggataatgctgagcttttagttttcacttcaagtgtactgcccaagcagtttcagagattccagacaaagctttatttgtggggtgcatttagggggaagcagtcttcccccttaacaaatgataatgaccccagaggtgagaaagacctcacaaagcccttaccttgttgtacacagagtccgaaaaagaagagagggagagagtcttcgagtgcgacctctcccaaccgaacgctgctggctccctgccgctgcgttccggtccaggagaggaagttttttcgggctagcggcatggatctctggcggaggcttggttcacgaatggtggaaggtggtttgacgccggacagggcaaatcgggtgagatctcctcctcttgggtcatgggtgagatttgacaaggaacagcgaaggggtgcttgccggcggcaattcctggcttcacggatggttcaaggtacatcaactaggtttgggggtggccggctttgtggtgaggcagtgcggtggcgtaggaatgcgttgctgcaacgtggcggtgcaaggcggcggtgtggtgacgtggagagagagctgacagcaagtttggaggagggaggcgctggctccttgcgggaagtggaggttgggccgggccgctgtgtttggtcaattttttattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

487

Amino Acids

54.51

Weight (kDa)

9.24

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 168 - 296 3.5e-45 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 403
AclWI GGATC 4 cut(s) 488, 760, 783, 1104
AcoI YGGCCR 3 cut(s) 405, 656, 1282
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 1142
AfaI GTAC 3 cut(s) 834, 970, 1261
AfiI CCNNNNNNNGG 2 cut(s) 403, 1178
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 8 cut(s) 63, 226, 377, 451, 570, 596, 828, 1256
AjiI CACGTC 2 cut(s) 103, 1363
AjnI CCWGG 2 cut(s) 1062, 1236
AjuI GAANNNNNNNTTGG 2 cut(s) 1410, 1442
AloI GAACNNNNNNTCC 2 cut(s) 1099, 1131
AluBI AGCT 6 cut(s) 560, 573, 675, 811, 868, 1375
AluI AGCT 6 cut(s) 560, 573, 675, 811, 868, 1375
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 4 cut(s) 488, 760, 783, 1104
AoxI GGCC 5 cut(s) 405, 656, 1282, 1430, 1435
ApeKI GCWGC 6 cut(s) 476, 619, 675, 1033, 1050, 1327
ApoI RAATTY 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 1369, 1401
AspLEI GCGC 1 cut(s) 1403
AspS9I GGNCC 4 cut(s) 680, 1060, 1430, 1435
AsuC2I CCSGG 1 cut(s) 1434
AsuHPI GGTGA 6 cut(s) 38, 947, 1174, 1201, 1307, 1370
AsuII TTCGAA 2 cut(s) 39, 176
AsuNHI GCTAGC 1 cut(s) 1085
AvaII GGWCC 2 cut(s) 680, 1060
BalI TGGCCA 1 cut(s) 658
BauI CACGAG 1 cut(s) 308
BbsI GAAGAC 3 cut(s) 468, 894, 996
BbvI GCAGC 6 cut(s) 463, 606, 662, 1020, 1037, 1314
BccI CCATC 1 cut(s) 1243
BciT130I CCWGG 2 cut(s) 1064, 1238
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 1 cut(s) 1434
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 4 cut(s) 438, 752, 1086, 1269
BfoI RGCGCY 1 cut(s) 1404
BglII AGATCT 1 cut(s) 1166
BlpI GCTNAGC 1 cut(s) 807
Bme1390I CCNGG 3 cut(s) 1064, 1238, 1434
Bme18I GGWCC 2 cut(s) 680, 1060
BmgBI CACGTC 2 cut(s) 103, 1363
BmgT120I GGNCC 4 cut(s) 680, 1060, 1430, 1435
BmiI GGNNCC 2 cut(s) 1041, 1408
BmrFI CCNGG 3 cut(s) 1064, 1238, 1434
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 419, 549
BmtI GCTAGC 1 cut(s) 1089
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 3 cut(s) 468, 894, 996
BplI GAGNNNNNCTC 4 cut(s) 685, 717, 1156, 1188
Bpu10I CCTNAGC 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 807
Bpu14I TTCGAA 2 cut(s) 39, 176
BpuMI CCSGG 1 cut(s) 1434
BsaHI GRCGYC 1 cut(s) 1142
BsaWI WCCGGW 1 cut(s) 1057
BsaXI ACNNNNNCTCC 6 cut(s) 496, 526, 1058, 1088, 1099, 1129
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 1178
Bse118I RCCGGY 2 cut(s) 1224, 1284
Bse1I ACTGG 2 cut(s) 161, 259
BseBI CCWGG 2 cut(s) 1064, 1238
BseGI GGATG 1 cut(s) 1254
BseLI CCNNNNNNNGG 2 cut(s) 403, 1178
BseMII CTCAG 2 cut(s) 192, 798
BseNI ACTGG 2 cut(s) 161, 259
BseRI GAGGAG 3 cut(s) 1161, 1164, 1406
BseXI GCAGC 6 cut(s) 463, 606, 662, 1020, 1037, 1314
BsgI GTGCAG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 362
BshFI GGCC 5 cut(s) 407, 658, 1284, 1432, 1437
BsiEI CGRYCG 1 cut(s) 362
BsiSI CCGG 5 cut(s) 1058, 1145, 1225, 1285, 1433
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 2 cut(s) 403, 1178
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 378
BsmI GAATGC 1 cut(s) 1324
BsnI GGCC 5 cut(s) 407, 658, 1284, 1432, 1437
Bsp119I TTCGAA 2 cut(s) 39, 176
Bsp1407I TGTACA 1 cut(s) 968
Bsp143I GATC 8 cut(s) 379, 400, 493, 688, 765, 775, 1096, 1166
Bsp1720I GCTNAGC 1 cut(s) 807
BspANI GGCC 5 cut(s) 407, 658, 1284, 1432, 1437
BspCNI CTCAG 2 cut(s) 193, 799
BspLI GGNNCC 2 cut(s) 1041, 1408
BspOI GCTAGC 1 cut(s) 1089
BspPI GGATC 4 cut(s) 488, 760, 783, 1104
BspT104I TTCGAA 2 cut(s) 39, 176
BsrFI RCCGGY 2 cut(s) 1224, 1284
BsrGI TGTACA 1 cut(s) 968
BsrI ACTGG 2 cut(s) 161, 259
BssAI RCCGGY 2 cut(s) 1224, 1284
BssMI GATC 8 cut(s) 379, 400, 493, 688, 765, 775, 1096, 1166
BssNI GRCGYC 1 cut(s) 1142
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 1064, 1238
Bst4CI ACNGT 4 cut(s) 10, 52, 59, 467
Bst6I CTCTTC 4 cut(s) 206, 227, 591, 983
BstACI GRCGYC 1 cut(s) 1142
BstAUI TGTACA 1 cut(s) 968
BstBI TTCGAA 2 cut(s) 39, 176
BstC8I GCNNGC 6 cut(s) 1038, 1087, 1222, 1226, 1286, 1405
BstDEI CTNAG 4 cut(s) 201, 315, 515, 807
BstF5I GGATG 1 cut(s) 1254
BstH2I RGCGCY 1 cut(s) 1404
BstHHI GCGC 1 cut(s) 1403
BstKTI GATC 8 cut(s) 382, 403, 496, 691, 768, 778, 1099, 1169
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 8 cut(s) 379, 400, 493, 688, 765, 775, 1096, 1166
BstMCI CGRYCG 1 cut(s) 362
BstMWI GCNNNNNNNGC 2 cut(s) 616, 788
BstNI CCWGG 2 cut(s) 1064, 1238
BstNSI RCATGY 2 cut(s) 24, 582
BstSCI CCNGG 3 cut(s) 1062, 1236, 1432
BstV1I GCAGC 6 cut(s) 463, 606, 662, 1020, 1037, 1314
BstV2I GAAGAC 3 cut(s) 468, 894, 996
BstX2I RGATCY 3 cut(s) 775, 1096, 1166
BstYI RGATCY 3 cut(s) 775, 1096, 1166
BsuRI GGCC 5 cut(s) 407, 658, 1284, 1432, 1437
BtrI CACGTC 2 cut(s) 103, 1363
BtsCI GGATG 1 cut(s) 1254
BtsI GCAGTG 3 cut(s) 328, 798, 1308
BtsIMutI CAGTG 4 cut(s) 252, 328, 798, 1308
Cac8I GCNNGC 6 cut(s) 1038, 1087, 1222, 1226, 1286, 1405
CfoI GCGC 1 cut(s) 1403
Cfr10I RCCGGY 2 cut(s) 1224, 1284
Cfr13I GGNCC 4 cut(s) 680, 1060, 1430, 1435
CseI GACGC 1 cut(s) 1150
Csp6I GTAC 3 cut(s) 833, 969, 1260
CviAII CATG 6 cut(s) 21, 398, 579, 763, 1093, 1185
CviQI GTAC 3 cut(s) 833, 969, 1260
DdeI CTNAG 4 cut(s) 201, 315, 515, 807
DpnI GATC 8 cut(s) 381, 402, 495, 690, 767, 777, 1098, 1168
DpnII GATC 8 cut(s) 379, 400, 493, 688, 765, 775, 1096, 1166
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 3 cut(s) 405, 656, 1282
Eam1104I CTCTTC 4 cut(s) 206, 227, 591, 983
EarI CTCTTC 4 cut(s) 206, 227, 591, 983
EciI GGCGGA 1 cut(s) 1120
Eco47I GGWCC 2 cut(s) 680, 1060
Eco57I CTGAAG 1 cut(s) 520
EcoRII CCWGG 2 cut(s) 1062, 1236
FaeI CATG 6 cut(s) 24, 401, 582, 766, 1096, 1188
FalI AAGNNNNNCTT 4 cut(s) 762, 794, 1204, 1236
FaqI GGGAC 1 cut(s) 378
FatI CATG 6 cut(s) 20, 397, 578, 762, 1092, 1184
FauI CCCGC 1 cut(s) 1407
FbaI TGATCA 1 cut(s) 688
FokI GGATG 1 cut(s) 1261
FspBI CTAG 4 cut(s) 438, 752, 1086, 1269
GlaI GCGC 1 cut(s) 1402
HaeII RGCGCY 1 cut(s) 1404
HaeIII GGCC 5 cut(s) 407, 658, 1284, 1432, 1437
HapII CCGG 5 cut(s) 1058, 1145, 1225, 1285, 1433
HgaI GACGC 1 cut(s) 1150
HhaI GCGC 1 cut(s) 1403
Hin1I GRCGYC 1 cut(s) 1142
Hin1II CATG 6 cut(s) 24, 401, 582, 766, 1096, 1188
Hin6I GCGC 1 cut(s) 1401
HinP1I GCGC 1 cut(s) 1401
HindIII AAGCTT 2 cut(s) 571, 866
HinfI GANTC 3 cut(s) 855, 976, 1001
HpaII CCGG 5 cut(s) 1058, 1145, 1225, 1285, 1433
HphI GGTGA 6 cut(s) 38, 947, 1174, 1201, 1307, 1370
Hpy166II GTNNAC 7 cut(s) 55, 80, 158, 551, 833, 971, 1118
Hpy188I TCNGA 5 cut(s) 202, 282, 693, 852, 981
Hpy188III TCNNGA 8 cut(s) 71, 302, 363, 374, 629, 716, 859, 1119
Hpy8I GTNNAC 7 cut(s) 55, 80, 158, 551, 833, 971, 1118
HpyAV CCTTC 6 cut(s) 183, 268, 284, 730, 1124, 1206
HpyCH4III ACNGT 4 cut(s) 10, 52, 59, 467
HpyCH4IV ACGT 3 cut(s) 102, 1333, 1362
HpyCH4V TGCA 4 cut(s) 479, 884, 1330, 1343
HpyF10VI GCNNNNNNNGC 2 cut(s) 616, 788
HpyF3I CTNAG 4 cut(s) 201, 315, 515, 807
HpySE526I ACGT 3 cut(s) 102, 1333, 1362
Hsp92I GRCGYC 1 cut(s) 1142
Hsp92II CATG 6 cut(s) 24, 401, 582, 766, 1096, 1188
HspAI GCGC 1 cut(s) 1401
KroI GCCGGC 2 cut(s) 1224, 1284
KroNI GCCGGC 2 cut(s) 1226, 1286
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 8 cut(s) 379, 400, 493, 688, 765, 775, 1096, 1166
LmnI GCTCC 2 cut(s) 1045, 1412
Lsp1109I GCAGC 6 cut(s) 463, 606, 662, 1020, 1037, 1314
LweI GCATC 2 cut(s) 419, 549
MaeI CTAG 4 cut(s) 438, 752, 1086, 1269
MaeII ACGT 3 cut(s) 102, 1333, 1362
MaeIII GTNAC 6 cut(s) 4, 46, 103, 146, 440, 1358
MalI GATC 8 cut(s) 381, 402, 495, 690, 767, 777, 1098, 1168
MboI GATC 8 cut(s) 379, 400, 493, 688, 765, 775, 1096, 1166
MflI RGATCY 3 cut(s) 775, 1096, 1166
MlsI TGGCCA 1 cut(s) 658
MluCI AATT 6 cut(s) 248, 328, 388, 605, 1232, 1452
MluNI TGGCCA 1 cut(s) 658
MlyI GAGTC 2 cut(s) 985, 1010
MmeI TCCRAC 1 cut(s) 521
Mox20I TGGCCA 1 cut(s) 658
MroNI GCCGGC 2 cut(s) 1224, 1284
MscI TGGCCA 1 cut(s) 658
MseI TTAA 2 cut(s) 416, 911
Msp20I TGGCCA 1 cut(s) 658
MspA1I CMGCKG 2 cut(s) 1050, 1440
MspI CCGG 5 cut(s) 1058, 1145, 1225, 1285, 1433
MspR9I CCNGG 3 cut(s) 1064, 1238, 1434
Mva1269I GAATGC 1 cut(s) 1324
MvaI CCWGG 2 cut(s) 1064, 1238
MwoI GCNNNNNNNGC 2 cut(s) 616, 788
NaeI GCCGGC 2 cut(s) 1226, 1286
NciI CCSGG 1 cut(s) 1434
NdeII GATC 8 cut(s) 379, 400, 493, 688, 765, 775, 1096, 1166
NgoMIV GCCGGC 2 cut(s) 1224, 1284
NheI GCTAGC 1 cut(s) 1085
NlaIII CATG 6 cut(s) 24, 401, 582, 766, 1096, 1188
NlaIV GGNNCC 2 cut(s) 1041, 1408
NmuCI GTSAC 4 cut(s) 103, 146, 440, 1358
NspI RCATGY 2 cut(s) 24, 582
NspV TTCGAA 2 cut(s) 39, 176
PciI ACATGT 1 cut(s) 20
PctI GAATGC 1 cut(s) 1324
PdiI GCCGGC 2 cut(s) 1226, 1286
PfeI GAWTC 1 cut(s) 855
PflMI CCANNNNNTGG 1 cut(s) 403
PfoI TCCNGGA 1 cut(s) 1062
PleI GAGTC 2 cut(s) 984, 1009
PpsI GAGTC 2 cut(s) 984, 1009
PscI ACATGT 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 1062, 1236
PspGI CCWGG 2 cut(s) 1062, 1236
PspN4I GGNNCC 2 cut(s) 1041, 1408
PspPI GGNCC 4 cut(s) 680, 1060, 1430, 1435
PsuI RGATCY 3 cut(s) 775, 1096, 1166
RsaI GTAC 3 cut(s) 834, 970, 1261
RsaNI GTAC 3 cut(s) 833, 969, 1260
SaqAI TTAA 2 cut(s) 416, 911
Sau3AI GATC 8 cut(s) 379, 400, 493, 688, 765, 775, 1096, 1166
Sau96I GGNCC 4 cut(s) 680, 1060, 1430, 1435
SchI GAGTC 2 cut(s) 985, 1010
ScrFI CCNGG 3 cut(s) 1064, 1238, 1434
SfaNI GCATC 2 cut(s) 419, 549
SfuI TTCGAA 2 cut(s) 39, 176
SinI GGWCC 2 cut(s) 680, 1060
Sse9I AATT 6 cut(s) 248, 328, 388, 605, 1232, 1452
SspI AATATT 1 cut(s) 119
SspMI CTAG 4 cut(s) 438, 752, 1086, 1269
StyD4I CCNGG 3 cut(s) 1062, 1236, 1432
TaaI ACNGT 4 cut(s) 10, 52, 59, 467
TaiI ACGT 3 cut(s) 105, 1336, 1365
TaqI TCGA 3 cut(s) 39, 176, 1007
TaqII GACCGA 1 cut(s) 348
TasI AATT 6 cut(s) 248, 328, 388, 605, 1232, 1452
TatI WGTACW 2 cut(s) 832, 968
TauI GCSGC 7 cut(s) 410, 437, 1050, 1092, 1231, 1351, 1440
TfiI GAWTC 1 cut(s) 855
Tru1I TTAA 2 cut(s) 416, 911
Tru9I TTAA 2 cut(s) 416, 911
TscAI CASTG 4 cut(s) 259, 328, 798, 1308
TseFI GTSAC 4 cut(s) 103, 146, 440, 1358
TseI GCWGC 6 cut(s) 476, 619, 675, 1033, 1050, 1327
Tsp45I GTSAC 4 cut(s) 103, 146, 440, 1358
TspDTI ATGAA 2 cut(s) 474, 539
TspGWI ACGGA 1 cut(s) 1261
TspRI CASTG 4 cut(s) 259, 328, 798, 1308
Van91I CCANNNNNTGG 1 cut(s) 403
VpaK11BI GGWCC 2 cut(s) 680, 1060
XapI RAATTY 1 cut(s) 248
XceI RCATGY 2 cut(s) 24, 582
XspI CTAG 4 cut(s) 438, 752, 1086, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.