Rmu_sc0000554.1_g000033

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000554.1
OG0006192
Physical Location & Seq
Forward (+)
149504 .. 151512
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
atggacgacgaagaaatgatggagtttgttaaggaggctttcgagggtgaagaaattgacatggattatgagttcgacgcgcctaggttctatgattttacaacgcttgaaaccgattgggaggctgaagtggctgaagattggttcagatacgccggaagttatccttcgtctcgtaagcaatttacagagctcgttaaatatttgatcacatttctagaaatggaattggatgattttgaatcactagcaatatcctattgtctgcttgagaagaagctagggaaagtcgcggagaattcaccgagttctccattattcgatagtgtagcaactaaaagacagaagttggaggctggctatgtgcggaaggttggaactgctgtaacgtcaccaaatggtagacctaaagtcaccattcctagagaaccaaacttggaaacagcacaaagggcacaaagacgtaggtataagactattgcgaaagatggagaacaagcaaaagtaagtgtctattcccttaacgctcctttagcagaaacgtttgtgcttcaagtcaatagtatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

189

Amino Acids

21.73

Weight (kDa)

4.67

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 137 - 172 7.9e-06 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 403
AccII CGCG 2 cut(s) 80, 293
AciI CCGC 2 cut(s) 293, 367
AclI AACGTT 1 cut(s) 542
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 2 cut(s) 147, 156
AgsI TTSAA 3 cut(s) 110, 242, 554
AhdI GACNNNNNGTC 1 cut(s) 410
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 2 cut(s) 193, 280
AluI AGCT 2 cut(s) 193, 280
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 298
AspA2I CCTAGG 1 cut(s) 83
AspLEI GCGC 1 cut(s) 82
AsuHPI GGTGA 4 cut(s) 59, 294, 384, 406
AvrII CCTAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BccI CCATC 2 cut(s) 13, 482
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 5 cut(s) 84, 218, 248, 281, 423
BlnI CCTAGG 1 cut(s) 83
BmeRI GACNNNNNGTC 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 457
Bsh1236I CGCG 2 cut(s) 80, 293
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 195, 457
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 2 cut(s) 293, 367
BspFNI CGCG 2 cut(s) 80, 293
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 358
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 2 cut(s) 80, 293
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 3 cut(s) 131, 452, 533
BstSLI GKGCMC 1 cut(s) 457
BstUI CGCG 2 cut(s) 80, 293
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 358
CfoI GCGC 1 cut(s) 82
CseI GACGC 1 cut(s) 86
CviAII CATG 1 cut(s) 61
CviJI RGCY 7 cut(s) 38, 125, 134, 193, 280, 356, 360
CviKI_1 RGCY 7 cut(s) 38, 125, 134, 193, 280, 356, 360
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
DriI GACNNNNNGTC 1 cut(s) 410
Eam1105I GACNNNNNGTC 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 147, 156
EcoICRI GAGCTC 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 83
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 1 cut(s) 64
FaiI YATR 5 cut(s) 62, 69, 93, 363, 471
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 1 cut(s) 60
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 403
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 195
FspBI CTAG 5 cut(s) 84, 218, 248, 281, 423
GlaI GCGC 1 cut(s) 81
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 82
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 1 cut(s) 242
HpaII CCGG 1 cut(s) 156
HphI GGTGA 4 cut(s) 59, 294, 384, 406
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 404
Hpy99I CGWCG 2 cut(s) 11, 80
HpyAV CCTTC 2 cut(s) 177, 364
HpyCH4IV ACGT 3 cut(s) 389, 463, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 452, 533
HpySE526I ACGT 3 cut(s) 389, 463, 542
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 2 cut(s) 169, 342
MaeI CTAG 5 cut(s) 84, 218, 248, 281, 423
MaeII ACGT 3 cut(s) 389, 463, 542
MaeIII GTNAC 3 cut(s) 385, 390, 412
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 4 cut(s) 23, 62, 149, 286
MhlI GDGCHC 2 cut(s) 195, 457
MluCI AATT 4 cut(s) 54, 182, 227, 298
MmeI TCCRAC 2 cut(s) 330, 355
MnlI CCTC 4 cut(s) 28, 37, 115, 346
MseI TTAA 3 cut(s) 30, 198, 522
MspI CCGG 1 cut(s) 156
MvnI CGCG 2 cut(s) 80, 293
MwoI GCNNNNNNNGC 3 cut(s) 131, 452, 533
NdeII GATC 1 cut(s) 207
NlaIII CATG 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 390, 412
PfeI GAWTC 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 195
Psp1406I AACGTT 1 cut(s) 542
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 3 cut(s) 30, 198, 522
Sau3AI GATC 1 cut(s) 207
SduI GDGCHC 2 cut(s) 195, 457
SetI ASST 9 cut(s) 89, 195, 282, 375, 392, 409, 466, 470, 545
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 4 cut(s) 54, 182, 227, 298
SsiI CCGC 2 cut(s) 293, 367
SspI AATATT 1 cut(s) 203
SspMI CTAG 5 cut(s) 84, 218, 248, 281, 423
SstI GAGCTC 1 cut(s) 195
StyI CCWWGG 1 cut(s) 83
TaiI ACGT 3 cut(s) 392, 466, 545
TaqI TCGA 3 cut(s) 42, 75, 321
TasI AATT 4 cut(s) 54, 182, 227, 298
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 3 cut(s) 30, 198, 522
Tru9I TTAA 3 cut(s) 30, 198, 522
TseFI GTSAC 2 cut(s) 390, 412
Tsp45I GTSAC 2 cut(s) 390, 412
XapI RAATTY 1 cut(s) 298
XbaI TCTAGA 1 cut(s) 217
XmaJI CCTAGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 403
XspI CTAG 5 cut(s) 84, 218, 248, 281, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.