Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000660.1

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Reverse (-)

87780 .. 90887

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgcagaccgcagtggaggtaactcggtggacggtggcggaggaggtagaggtggctcggtgcctcgtggagagagtgagagtatctgagagtatggagtcggtgcctcggtgctgtttctggtgcactagttactccaggatatcgggatggtgctcaatcacagctttggttacaagacacagaggaaatggaacgaacatgttgcagtcctctgatatcagaatgagaggaatcaaagagaactcaatcttctccttcaatactgctgctcaattcccaattgattttgttgagttcgacgttcaggtggccaaagatgactgtccagtaattttccatgacaactttatcgtcagtgaggacaaggatgttttcattgagaagagagttacagaccttaagctaccaaaatttctttcctatggaccccagaaacagcttggagaggtcatcatcaatgttgattggtctcaaatgtatgatgatgttagaaagaactctttggaagaagcagttaagatgtgcatggcaggtgctctctctctctctctctcctccccttctacctccaaagaagtagccgcagcagcagcccaagaggcggagctgcaaaccccaactgagcccgccacaattgttaaagaaccaagcccgccgcaatttccaaaacgccatcgccgctcttcaagaagcctttctcaccttctgcttcccgatccaggcccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

243

Amino Acids

27.27

Weight (kDa)

5.68

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	61 - 142	5.2e-15	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	524
AccB1I	GGYRCC	2 cut(s)	60, 103
AccBSI	CCGCTC	1 cut(s)	684
AciI	CCGC	8 cut(s)	9, 38, 585, 605, 630, 656, 659, 682
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	604, 722
AflII	CTTAAG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	262, 690
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	2 cut(s)	137, 721
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	4 cut(s)	167, 406, 442, 610
AluI	AGCT	4 cut(s)	167, 406, 442, 610
Alw21I	GWGCWC	3 cut(s)	128, 158, 541
Alw26I	GTCTC	1 cut(s)	477
Alw44I	GTGCAC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	713
AoxI	GGCC	2 cut(s)	312, 724
ApaLI	GTGCAC	1 cut(s)	124
ApeKI	GCWGC	5 cut(s)	269, 587, 590, 593, 610
ApoI	RAATTY	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	697
AspS9I	GGNCC	2 cut(s)	428, 725
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	2 cut(s)	60, 103
BanII	GRGCYC	1 cut(s)	630
BauI	CACGAG	1 cut(s)	65
Bbv12I	GWGCWC	3 cut(s)	128, 158, 541
BbvI	GCAGC	5 cut(s)	256, 597, 599, 602, 605
BccI	CCATC	2 cut(s)	144, 684
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	2 cut(s)	139, 723
BcoDI	GTCTC	1 cut(s)	477
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	1 cut(s)	129
BfrI	CTTAAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	524
BglI	GCCNNNNNGGC	1 cut(s)	602
BisI	GCNGC	8 cut(s)	270, 585, 588, 591, 594, 611, 659, 682
BlsI	GCNGC	8 cut(s)	271, 586, 589, 592, 595, 612, 660, 683
Bme1390I	CCNGG	2 cut(s)	139, 723
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	2 cut(s)	428, 725
BmiI	GGNNCC	3 cut(s)	62, 105, 430
BmrFI	CCNGG	2 cut(s)	139, 723
BpmI	CTGGAG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	604, 722
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	2 cut(s)	139, 723
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	155, 376
BseLI	CCNNNNNNNGG	2 cut(s)	604, 722
BseMII	CTCAG	2 cut(s)	78, 615
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	2 cut(s)	56, 547
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	5 cut(s)	256, 597, 599, 602, 605
BshFI	GGCC	2 cut(s)	314, 726
BshNI	GGYRCC	2 cut(s)	60, 103
BsiHKAI	GWGCWC	3 cut(s)	128, 158, 541
BslI	CCNNNNNNNGG	2 cut(s)	604, 722
BsmAI	GTCTC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	314, 726
Bso31I	GGTCTC	1 cut(s)	477
Bsp1286I	GDGCHC	4 cut(s)	128, 158, 541, 630
Bsp143I	GATC	1 cut(s)	718
BspACI	CCGC	8 cut(s)	9, 38, 585, 605, 630, 656, 659, 682
BspANI	GGCC	2 cut(s)	314, 726
BspCNI	CTCAG	2 cut(s)	79, 616
BspLI	GGNNCC	3 cut(s)	62, 105, 430
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	713
BspQI	GCTCTTC	1 cut(s)	691
BspT107I	GGYRCC	2 cut(s)	60, 103
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	477
BsrBI	CCGCTC	1 cut(s)	684
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	718
BssSI	CACGAG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	65
Bst2UI	CCWGG	2 cut(s)	139, 723
Bst4CI	ACNGT	2 cut(s)	34, 326
Bst6I	CTCTTC	2 cut(s)	380, 691
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	630, 656
BstDEI	CTNAG	2 cut(s)	87, 624
BstF5I	GGATG	2 cut(s)	155, 376
BstKTI	GATC	1 cut(s)	721
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	1 cut(s)	718
BstMWI	GCNNNNNNNGC	4 cut(s)	590, 593, 602, 681
BstNI	CCWGG	2 cut(s)	139, 723
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	137, 721
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	5 cut(s)	256, 597, 599, 602, 605
BsuRI	GGCC	2 cut(s)	314, 726
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	155, 376
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 364
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	2 cut(s)	630, 656
Cfr13I	GGNCC	2 cut(s)	428, 725
CviAII	CATG	3 cut(s)	202, 341, 529
DdeI	CTNAG	2 cut(s)	87, 624
DpnI	GATC	1 cut(s)	720
DpnII	GATC	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	380, 691
EarI	CTCTTC	2 cut(s)	380, 691
EciI	GGCGGA	2 cut(s)	53, 620
Eco24I	GRGCYC	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	477
Eco32I	GATATC	2 cut(s)	144, 220
Eco47I	GGWCC	1 cut(s)	428
EcoRII	CCWGG	2 cut(s)	137, 721
EcoRV	GATATC	2 cut(s)	144, 220
EcoT38I	GRGCYC	1 cut(s)	630
FaeI	CATG	3 cut(s)	205, 344, 532
FaiI	YATR	6 cut(s)	95, 203, 342, 426, 483, 530
FatI	CATG	3 cut(s)	201, 340, 528
FauI	CCCGC	2 cut(s)	637, 663
Fnu4HI	GCNGC	8 cut(s)	270, 585, 588, 591, 594, 611, 659, 682
FokI	GGATG	2 cut(s)	162, 383
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	8 cut(s)	270, 585, 588, 591, 594, 611, 659, 682
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	8 cut(s)	270, 585, 588, 591, 594, 611, 659, 682
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	314, 726
Hin1II	CATG	3 cut(s)	205, 344, 532
HinfI	GANTC	2 cut(s)	98, 234
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	2 cut(s)	30, 126
Hpy188I	TCNGA	3 cut(s)	88, 217, 224
Hpy188III	TCNNGA	3 cut(s)	147, 690, 716
Hpy8I	GTNNAC	2 cut(s)	30, 126
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	3 cut(s)	268, 573, 716
HpyCH4III	ACNGT	2 cut(s)	34, 326
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	5 cut(s)	4, 126, 208, 528, 613
HpyF10VI	GCNNNNNNNGC	4 cut(s)	590, 593, 602, 681
HpyF3I	CTNAG	2 cut(s)	87, 624
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	205, 344, 532
Kzo9I	GATC	1 cut(s)	718
LguI	GCTCTTC	1 cut(s)	691
LmnI	GCTCC	1 cut(s)	607
LpnPI	CCDG	8 cut(s)	106, 124, 151, 293, 342, 446, 519, 708
Lsp1109I	GCAGC	5 cut(s)	256, 597, 599, 602, 605
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	4 cut(s)	19, 131, 172, 391
MalI	GATC	1 cut(s)	720
MbiI	CCGCTC	1 cut(s)	684
MboI	GATC	1 cut(s)	718
MboII	GAAGA	4 cut(s)	244, 397, 521, 678
MfeI	CAATTG	2 cut(s)	282, 636
MhlI	GDGCHC	4 cut(s)	128, 158, 541, 630
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	6 cut(s)	275, 282, 333, 413, 636, 662
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	107
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	697
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	3 cut(s)	402, 519, 642
Msp20I	TGGCCA	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	139, 723
MunI	CAATTG	2 cut(s)	282, 636
MvaI	CCWGG	2 cut(s)	139, 723
MwoI	GCNNNNNNNGC	4 cut(s)	590, 593, 602, 681
NdeII	GATC	1 cut(s)	718
NlaIII	CATG	3 cut(s)	205, 344, 532
NlaIV	GGNNCC	3 cut(s)	62, 105, 430
NspI	RCATGY	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	524
PciI	ACATGT	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	234
PfoI	TCCNGGA	1 cut(s)	137
PkrI	GCNGC	8 cut(s)	271, 586, 589, 592, 595, 612, 660, 683
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PscI	ACATGT	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	137, 721
PspGI	CCWGG	2 cut(s)	137, 721
PspN4I	GGNNCC	3 cut(s)	62, 105, 430
PspPI	GGNCC	2 cut(s)	428, 725
SapI	GCTCTTC	1 cut(s)	691
SaqAI	TTAA	3 cut(s)	402, 519, 642
SatI	GCNGC	8 cut(s)	270, 585, 588, 591, 594, 611, 659, 682
Sau3AI	GATC	1 cut(s)	718
Sau96I	GGNCC	2 cut(s)	428, 725
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	139, 723
SduI	GDGCHC	4 cut(s)	128, 158, 541, 630
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	6 cut(s)	275, 282, 333, 413, 636, 662
SsiI	CCGC	8 cut(s)	9, 38, 585, 605, 630, 656, 659, 682
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	137, 721
TaaI	ACNGT	2 cut(s)	34, 326
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	300
TasI	AATT	6 cut(s)	275, 282, 333, 413, 636, 662
TauI	GCSGC	3 cut(s)	587, 661, 684
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	3 cut(s)	402, 519, 642
Tru9I	TTAA	3 cut(s)	402, 519, 642
TscAI	CASTG	2 cut(s)	18, 364
TseI	GCWGC	5 cut(s)	269, 587, 590, 593, 610
TspDTI	ATGAA	1 cut(s)	367
TspRI	CASTG	2 cut(s)	18, 364
Vha464I	CTTAAG	1 cut(s)	401
VneI	GTGCAC	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.