Rmu_sc0000694.1_g000009

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000694.1
OG0003334
Physical Location & Seq
Forward (+)
47580 .. 50250
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 846 bp
atggtgcgcttagtttccagtactggaattcataatccagaggaggaagatgactatcaagtagaagaaggatataatgatgagtcagagcagccttctttgcccccttcttttcctaaacttgagttggagattaaggaatccattgcatcgcttggaggtgctgtgttcccgaagctaaactggagtgcaccaaaagtttctgcttggattagcacaactgggactcttagatgctcttccttcagtgagattgcactgttgctacgatcatctgactcactggtgcatgatttgtgtcatgcttatgattcctgcaatgacaagacctcctcacggcccaagagcttcttccttgctctccgtaaatggtacccatcccttcagccagagatggaattccgctgctttgtgaggaatcagaatttagttggaatttcccagcgcgaggccacaaccttctacccttctctgcttgaaagcaaagagcatctgggagagttgattgaagagttctttatggaaaatttaaggtcaagattcgagtcggaaaattatacctttgatgtatacgtgacgaaggacgagcgagttaaggttatggatttcaacccttggagtgcatttacactgcctctgatgtttacatgggagaaactggaacagagtgataatgaacaaggggatggtgtggacttcagaattgtggagagccagtgtggtgttaggccaggtttgaagacagcagtgccctacgattatgtggacactagctctgggagtggctgggaccagtttttcaggaacgcggatgaagagttactgcggaaaagtaggtctccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
D123

Protein Analysis

281

Amino Acids

32.25

Weight (kDa)

4.72

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
D123 PF07065 11 - 258 1.2e-84 D123
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AccI GTMKAC 1 cut(s) 570
AccII CGCG 2 cut(s) 447, 809
AciI CCGC 3 cut(s) 403, 809, 826
AcsI RAATTY 5 cut(s) 27, 398, 424, 435, 526
AcuI CTGAAG 3 cut(s) 229, 368, 682
AfaI GTAC 2 cut(s) 22, 374
AfiI CCNNNNNNNGG 2 cut(s) 336, 448
AgsI TTSAA 4 cut(s) 479, 509, 610, 739
AjnI CCWGG 1 cut(s) 730
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 3 cut(s) 178, 348, 774
AluI AGCT 3 cut(s) 178, 348, 774
Alw21I GWGCWC 1 cut(s) 193
Alw44I GTGCAC 1 cut(s) 189
AoxI GGCC 3 cut(s) 338, 450, 728
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 91, 405
ApoI RAATTY 5 cut(s) 27, 398, 424, 435, 526
Asp718I GGTACC 1 cut(s) 372
AspLEI GCGC 2 cut(s) 9, 447
AspS9I GGNCC 2 cut(s) 339, 790
AvaII GGWCC 1 cut(s) 790
BaeGI GKGCMC 2 cut(s) 193, 753
BanI GGYRCC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 746
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 103, 392
BccI CCATC 3 cut(s) 385, 388, 680
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 732
BfaI CTAG 1 cut(s) 771
BisI GCNGC 2 cut(s) 92, 406
BlsI GCNGC 2 cut(s) 93, 407
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 732
Bme18I GGWCC 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 339, 790
BmiI GGNNCC 2 cut(s) 374, 791
BmrFI CCNGG 1 cut(s) 732
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 3 cut(s) 158, 224, 499
BmuI ACTGGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 746
BpmI CTGGAG 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 574
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 614
BsaXI ACNNNNNCTCC 6 cut(s) 150, 180, 314, 344, 701, 731
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 448
Bse1I ACTGG 8 cut(s) 18, 28, 188, 226, 288, 663, 715, 793
Bse3DI GCAATG 2 cut(s) 144, 325
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 732
BseDI CCNNGG 1 cut(s) 614
BseGI GGATG 3 cut(s) 377, 691, 817
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 336, 448
BseMI GCAATG 2 cut(s) 144, 325
BseNI ACTGG 8 cut(s) 18, 28, 188, 226, 288, 663, 715, 793
BseRI GAGGAG 2 cut(s) 56, 322
BseSI GKGCMC 2 cut(s) 193, 753
BseXI GCAGC 2 cut(s) 103, 392
BseYI CCCAGC 2 cut(s) 441, 786
Bsh1236I CGCG 2 cut(s) 447, 809
BshFI GGCC 3 cut(s) 340, 452, 730
BshNI GGYRCC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 193
BslFI GGGAC 2 cut(s) 238, 803
BslI CCNNNNNNNGG 2 cut(s) 336, 448
BsmFI GGGAC 2 cut(s) 238, 803
BsnI GGCC 3 cut(s) 340, 452, 730
Bsp1286I GDGCHC 2 cut(s) 193, 753
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 3 cut(s) 403, 809, 826
BspANI GGCC 3 cut(s) 340, 452, 730
BspFNI CGCG 2 cut(s) 447, 809
BspLI GGNNCC 2 cut(s) 374, 791
BspQI GCTCTTC 1 cut(s) 244
BspT107I GGYRCC 1 cut(s) 372
BsrDI GCAATG 2 cut(s) 144, 325
BsrI ACTGG 8 cut(s) 18, 28, 188, 226, 288, 663, 715, 793
BssECI CCNNGG 1 cut(s) 614
BssMI GATC 1 cut(s) 269
BssNAI GTATAC 1 cut(s) 571
BssT1I CCWWGG 1 cut(s) 614
Bst1107I GTATAC 1 cut(s) 571
Bst2UI CCWGG 1 cut(s) 732
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 3 cut(s) 244, 504, 810
BstBAI YACGTR 1 cut(s) 574
BstDEI CTNAG 2 cut(s) 10, 230
BstF5I GGATG 3 cut(s) 377, 691, 817
BstFNI CGCG 2 cut(s) 447, 809
BstHHI GCGC 2 cut(s) 9, 447
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 732
BstSCI CCNGG 1 cut(s) 730
BstSLI GKGCMC 2 cut(s) 193, 753
BstUI CGCG 2 cut(s) 447, 809
BstV1I GCAGC 2 cut(s) 103, 392
BstV2I GAAGAC 1 cut(s) 746
BstZ17I GTATAC 1 cut(s) 571
BsuRI GGCC 3 cut(s) 340, 452, 730
BtgZI GCGATG 1 cut(s) 135
BtsCI GGATG 3 cut(s) 377, 691, 817
BtsI GCAGTG 2 cut(s) 629, 753
BtsIMutI CAGTG 6 cut(s) 253, 257, 281, 629, 722, 753
CfoI GCGC 2 cut(s) 9, 447
Cfr13I GGNCC 2 cut(s) 339, 790
Csp6I GTAC 2 cut(s) 21, 373
CviAII CATG 3 cut(s) 290, 302, 648
CviQI GTAC 2 cut(s) 21, 373
DdeI CTNAG 2 cut(s) 10, 230
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
Eam1104I CTCTTC 3 cut(s) 244, 504, 810
EarI CTCTTC 3 cut(s) 244, 504, 810
Eco130I CCWWGG 1 cut(s) 614
Eco47I GGWCC 1 cut(s) 790
Eco57I CTGAAG 3 cut(s) 229, 368, 682
EcoRI GAATTC 2 cut(s) 27, 398
EcoRII CCWGG 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 614
FaeI CATG 3 cut(s) 293, 305, 651
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 2 cut(s) 238, 803
FatI CATG 3 cut(s) 289, 301, 647
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 2 cut(s) 92, 406
FokI GGATG 3 cut(s) 364, 698, 824
Fsp4HI GCNGC 2 cut(s) 92, 406
FspBI CTAG 1 cut(s) 771
GlaI GCGC 2 cut(s) 8, 446
GluI GCNGC 2 cut(s) 92, 406
GsaI CCCAGC 2 cut(s) 445, 790
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 3 cut(s) 340, 452, 730
HhaI GCGC 2 cut(s) 9, 447
Hin1II CATG 3 cut(s) 293, 305, 651
Hin6I GCGC 2 cut(s) 7, 445
HinP1I GCGC 2 cut(s) 7, 445
HinfI GANTC 8 cut(s) 83, 140, 226, 278, 311, 418, 540, 545
Hpy166II GTNNAC 5 cut(s) 191, 571, 645, 694, 766
Hpy188I TCNGA 6 cut(s) 88, 277, 423, 550, 639, 701
Hpy188III TCNNGA 4 cut(s) 38, 172, 537, 802
Hpy8I GTNNAC 5 cut(s) 191, 571, 645, 694, 766
HpyAV CCTTC 8 cut(s) 62, 105, 117, 253, 392, 469, 477, 574
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 6 cut(s) 149, 191, 257, 289, 318, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 10, 230
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 3 cut(s) 293, 305, 651
HspAI GCGC 2 cut(s) 7, 445
KpnI GGTACC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 269
LguI GCTCTTC 1 cut(s) 244
Lsp1109I GCAGC 2 cut(s) 103, 392
LweI GCATC 3 cut(s) 158, 224, 499
MaeI CTAG 1 cut(s) 771
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 2 cut(s) 574, 819
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 7 cut(s) 59, 77, 231, 343, 521, 751, 827
MhlI GDGCHC 2 cut(s) 193, 753
MluCI AATT 7 cut(s) 27, 398, 424, 435, 526, 553, 702
MlyI GAGTC 4 cut(s) 92, 220, 272, 554
MmeI TCCRAC 3 cut(s) 108, 412, 528
MnlI CCTC 8 cut(s) 34, 37, 152, 340, 343, 408, 442, 645
MseI TTAA 4 cut(s) 135, 530, 594, 844
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 732
MvaI CCWGG 1 cut(s) 732
MvnI CGCG 2 cut(s) 447, 809
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 1 cut(s) 269
NlaIII CATG 3 cut(s) 293, 305, 651
NlaIV GGNNCC 2 cut(s) 374, 791
NmuCI GTSAC 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 244
PfeI GAWTC 4 cut(s) 140, 311, 418, 540
PkrI GCNGC 2 cut(s) 93, 407
PleI GAGTC 4 cut(s) 91, 220, 272, 553
PpsI GAGTC 4 cut(s) 91, 220, 272, 553
Ppu21I YACGTR 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 730
PspFI CCCAGC 2 cut(s) 441, 786
PspGI CCWGG 1 cut(s) 730
PspN4I GGNNCC 2 cut(s) 374, 791
PspPI GGNCC 2 cut(s) 339, 790
RsaI GTAC 2 cut(s) 22, 374
RsaNI GTAC 2 cut(s) 21, 373
RseI CAYNNNNRTG 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 244
SaqAI TTAA 4 cut(s) 135, 530, 594, 844
SatI GCNGC 2 cut(s) 92, 406
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 2 cut(s) 339, 790
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 4 cut(s) 92, 220, 272, 554
ScrFI CCNGG 1 cut(s) 732
SduI GDGCHC 2 cut(s) 193, 753
SfaNI GCATC 3 cut(s) 158, 224, 499
SinI GGWCC 1 cut(s) 790
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 7 cut(s) 27, 398, 424, 435, 526, 553, 702
SsiI CCGC 3 cut(s) 403, 809, 826
SspMI CTAG 1 cut(s) 771
StyD4I CCNGG 1 cut(s) 730
StyI CCWWGG 1 cut(s) 614
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 576
TaqI TCGA 1 cut(s) 543
TasI AATT 7 cut(s) 27, 398, 424, 435, 526, 553, 702
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 4 cut(s) 140, 311, 418, 540
Tru1I TTAA 4 cut(s) 135, 530, 594, 844
Tru9I TTAA 4 cut(s) 135, 530, 594, 844
TscAI CASTG 6 cut(s) 253, 264, 288, 636, 722, 753
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 2 cut(s) 91, 405
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 3 cut(s) 20, 690, 828
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 6 cut(s) 253, 264, 288, 636, 722, 753
VneI GTGCAC 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 790
XapI RAATTY 5 cut(s) 27, 398, 424, 435, 526
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 1 cut(s) 771
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.