Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000785.1

Orthogroup ID

OG0004527

Physical Location & Seq

Genomic Coordinates Forward (+)

124100 .. 125077

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgctgacactaatgccacctccaagcccagagtccccatggaccctctcccctcaccaaaccccatccccttcacttctttaccactgcattgcctccctctttcgccgcgaaggctccatcttctccattgcagtctcaaagcagcaaggagtagtcttcactggctcagagagtacccgagttcgtgaagtacgagctattgcaactcatggtaatatgcttttcacctcacacaaagaccacaaaattcgaatgtggaacttcacggtcacagaacacaatttcaagtccaaaaaggtttcttctctccccaaaacaagctctttccctttattttcaagatttaaaaacaccaaacaacaacacaaagaatgcatttcctgcctggcatattatcaaacagatggtctgttgtatactggctcccatgacagaacagtcaaagaatggcggcttataaccaatcactgtgtggactcatttgtggcacatgaagatgatgtgaatgcaatggtggtgaaccaagatgatgggtgcgttttcacttgctcctcagatggttctgtcaaactgtggagaagggttttcagagaaaactctcacactctcaccatgactctcaaatcccaattcccaaattccaactaccctgtaaacgccatagccttaaacacatcatccaactcttgcttcctctactctggttcttcagacggaaccattagtttctgggagaaggagaaactgacccacaggtttaaacatggtgggtttttacagggccaccatttttcagttctgtgtttagtggccatcgagaagttgattttcagtggatcagaggatactacaattagggtttggaggagggaagaagggggttgttttcatgaatgtttggctgtgttggaggggcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005874 GO:0005875 GO:0005938 GO:0007154 GO:0007165 GO:0008017 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0017016 GO:0017048 GO:0019899 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0031267 GO:0031592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035556 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044380 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044877 GO:0045504 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051179 GO:0051640 GO:0051641 GO:0051642 GO:0051645 GO:0051716 GO:0061842 GO:0065007 GO:0070727 GO:0070840 GO:0071539 GO:0071944 GO:0072698 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1905508

KEGG Pathways

Metabolic & Signaling

ko04114 ko04120 ko04218 ko04310 ko04340 ko04341 ko04390 ko04624 ko04710 ko05131 map04114 map04120 map04218 map04310 map04340 map04341 map04390 map04624 map04710 map05131

Pfam Domains

Protein Families

WD40

Protein Analysis

307

Amino Acids

34.82

Weight (kDa)

8.65

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIF3I	PF24805	37 - 194	2.2e-06	EIF3I
Beta-prop_TEP1_2nd	PF25047	60 - 195	3.7e-08	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	69 - 207	2.5e-16	WDR5 beta-propeller domain
WDR55	PF24796	77 - 288	1e-13	WDR55
Beta-prop_ACSF4	PF13570	120 - 289	3.5e-06	Beta-alanine-activating enzyme, beta-propeller
WD40_CDC20-Fz	PF24807	121 - 298	1.1e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	122 - 194	1.1e-13	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	122 - 299	1.3e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	123 - 247	1.6e-10	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	123 - 248	1.4e-12	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	123 - 217	6e-09	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	128 - 289	5.4e-07	G protein beta WD-40 repeat protein
Beta-prop_EML_2	PF23414	129 - 290	2.2e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40	PF00400	157 - 193	9.3e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	217 - 299	4.1e-09	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	218 - 294	2.8e-07	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	219 - 299	7.5e-06	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	224 - 299	5.6e-07	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	231 - 292	2.5e-06	TEP-1 second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35690 FvH4_6g31961
malus_domestica	MD08G1115200.v1.1 MD09G1207500.v1.1 MD17G1188800.v1.1
prunus_persica	Prupe.1G449400_v2.0.a1 Prupe.3G063300_v2.0.a1
pyrus_communis	pycom09g12370
rosa_chinensis	RchiOBHm_Chr2g0139471 RchiOBHm_Chr6g0306111
rosa_laevigata	RLG00000010824 RLG00000019813
rosa_multiflora	Rmu_sc0000785.1_g000023 Rmu_sc0000903.1_g000022 Rmu_sc0001983.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105410 Rroxscaffold_7G00162050
rosa_rugosa	Rorug06G0282100 Rorug06G0346800
rosa_samantha	Rh2AG407500 Rh2BG418100 Rh2CG393500 Rh2DG426900 Rh6AG459200 Rh6BG441700 Rh6CG473700 Rh6DG459900
rosa_wichuraiana	Rw2G033010 Rw2G033270 Rw6G006540 Rw6G040030 Rw7G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AasI	GACNNNNNNGTC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	419
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	109, 454
AclWI	GGATC	1 cut(s)	847
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	2 cut(s)	249, 640
AcuI	CTGAAG	1 cut(s)	696
AdeI	CACNNNGTG	1 cut(s)	475
AfaI	GTAC	2 cut(s)	178, 195
AgsI	TTSAA	2 cut(s)	289, 342
AjnI	CCWGG	1 cut(s)	387
AjuI	GAANNNNNNNTTGG	2 cut(s)	677, 709
AluBI	AGCT	2 cut(s)	200, 324
AluI	AGCT	2 cut(s)	200, 324
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	847
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	2 cut(s)	784, 813
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	2 cut(s)	249, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
AspS9I	GGNCC	2 cut(s)	42, 784
AsuHPI	GGTGA	4 cut(s)	47, 220, 532, 604
AsuII	TTCGAA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	815
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	6 cut(s)	73, 128, 401, 527, 554, 824
BciT130I	CCWGG	1 cut(s)	389
BciVI	GTATCC	1 cut(s)	841
BcoDI	GTCTC	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	841
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	3 cut(s)	109, 146, 455
BlsI	GCNGC	3 cut(s)	110, 147, 456
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	42
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	42, 784
BmiI	GGNNCC	4 cut(s)	44, 118, 427, 721
BmrFI	CCNGG	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	169, 427
Bse3DI	GCAATG	3 cut(s)	90, 129, 519
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	65, 680
BseMI	GCAATG	3 cut(s)	90, 129, 519
BseMII	CTCAG	2 cut(s)	183, 570
BseNI	ACTGG	2 cut(s)	169, 427
BseRI	GAGGAG	2 cut(s)	544, 883
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	786, 815
BsiHKCI	CYCGRG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	2 cut(s)	380, 514
BsnI	GGCC	2 cut(s)	786, 815
BsoBI	CYCGRG	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	839
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	2 cut(s)	109, 454
BspANI	GGCC	2 cut(s)	786, 815
BspCNI	CTCAG	2 cut(s)	182, 569
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	4 cut(s)	44, 118, 427, 721
BspPI	GGATC	1 cut(s)	847
BspT104I	TTCGAA	1 cut(s)	253
BsrDI	GCAATG	3 cut(s)	90, 129, 519
BsrI	ACTGG	2 cut(s)	169, 427
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	839
BssNAI	GTATAC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	38
Bst1107I	GTATAC	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	4 cut(s)	271, 442, 473, 576
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	169, 556
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	65, 680
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	842
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	839
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 384
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	533
BstZ17I	GTATAC	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	841
BsuRI	GGCC	2 cut(s)	786, 815
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	65, 680
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	4 cut(s)	85, 162, 469, 841
CciI	TCATGA	1 cut(s)	892
Cfr13I	GGNCC	2 cut(s)	42, 784
Csp6I	GTAC	2 cut(s)	177, 194
CviAII	CATG	7 cut(s)	39, 212, 431, 494, 616, 767, 893
CviQI	GTAC	2 cut(s)	177, 194
DdeI	CTNAG	2 cut(s)	169, 556
DpnI	GATC	1 cut(s)	841
DpnII	GATC	1 cut(s)	839
DraI	TTTAAA	2 cut(s)	349, 763
DraIII	CACNNNGTG	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	440
DseDI	GACNNNNNNGTC	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	813
Eco130I	CCWWGG	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	38
EcoT22I	ATGCAT	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	7 cut(s)	42, 215, 434, 497, 619, 770, 896
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	7 cut(s)	38, 211, 430, 493, 615, 766, 892
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	3 cut(s)	109, 146, 455
FokI	GGATG	2 cut(s)	52, 667
Fsp4HI	GCNGC	3 cut(s)	109, 146, 455
GluI	GCNGC	3 cut(s)	109, 146, 455
HaeIII	GGCC	2 cut(s)	786, 815
Hin1II	CATG	7 cut(s)	42, 215, 434, 497, 619, 770, 896
HinfI	GANTC	3 cut(s)	32, 479, 619
HphI	GGTGA	4 cut(s)	47, 220, 532, 604
Hpy166II	GTNNAC	4 cut(s)	420, 478, 523, 658
Hpy188I	TCNGA	5 cut(s)	172, 559, 593, 715, 844
Hpy188III	TCNNGA	4 cut(s)	188, 342, 820, 893
Hpy8I	GTNNAC	4 cut(s)	420, 478, 523, 658
HpyAV	CCTTC	5 cut(s)	81, 107, 576, 733, 872
HpyCH4III	ACNGT	4 cut(s)	271, 442, 473, 576
HpyCH4V	TGCA	5 cut(s)	90, 134, 206, 378, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 384
HpyF3I	CTNAG	2 cut(s)	169, 556
Hsp92II	CATG	7 cut(s)	42, 215, 434, 497, 619, 770, 896
Kzo9I	GATC	1 cut(s)	839
LmnI	GCTCC	3 cut(s)	122, 431, 557
Lsp1109I	GCAGC	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	841
MboI	GATC	1 cut(s)	839
MboII	GAAGA	6 cut(s)	115, 151, 297, 509, 702, 887
MlsI	TGGCCA	1 cut(s)	815
MluCI	AATT	5 cut(s)	249, 283, 632, 640, 855
MluNI	TGGCCA	1 cut(s)	815
MlyI	GAGTC	3 cut(s)	41, 473, 613
MmeI	TCCRAC	3 cut(s)	669, 708, 891
Mox20I	TGGCCA	1 cut(s)	815
Mph1103I	ATGCAT	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	815
MseI	TTAA	3 cut(s)	348, 671, 762
MslI	CAYNNNNRTG	1 cut(s)	498
Msp20I	TGGCCA	1 cut(s)	815
MspR9I	CCNGG	1 cut(s)	389
MssI	GTTTAAAC	1 cut(s)	763
Mva1269I	GAATGC	2 cut(s)	380, 514
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	114, 384
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	839
NlaIII	CATG	7 cut(s)	42, 215, 434, 497, 619, 770, 896
NlaIV	GGNNCC	4 cut(s)	44, 118, 427, 721
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	253
PagI	TCATGA	1 cut(s)	892
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PctI	GAATGC	2 cut(s)	380, 514
PkrI	GCNGC	3 cut(s)	110, 147, 456
PleI	GAGTC	3 cut(s)	40, 473, 613
PmeI	GTTTAAAC	1 cut(s)	763
PpsI	GAGTC	3 cut(s)	40, 473, 613
PsiI	TTATAA	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	4 cut(s)	44, 118, 427, 721
PspPI	GGNCC	2 cut(s)	42, 784
RsaI	GTAC	2 cut(s)	178, 195
RsaNI	GTAC	2 cut(s)	177, 194
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	348, 671, 762
SatI	GCNGC	3 cut(s)	109, 146, 455
Sau3AI	GATC	1 cut(s)	839
Sau96I	GGNCC	2 cut(s)	42, 784
SchI	GAGTC	3 cut(s)	41, 473, 613
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	6 cut(s)	22, 202, 233, 303, 326, 761
SfuI	TTCGAA	1 cut(s)	253
SinI	GGWCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	498
Sse9I	AATT	5 cut(s)	249, 283, 632, 640, 855
SsiI	CCGC	2 cut(s)	109, 454
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	4 cut(s)	271, 442, 473, 576
TaqI	TCGA	2 cut(s)	253, 819
TasI	AATT	5 cut(s)	249, 283, 632, 640, 855
TauI	GCSGC	2 cut(s)	111, 457
Tru1I	TTAA	3 cut(s)	348, 671, 762
Tru9I	TTAA	3 cut(s)	348, 671, 762
TscAI	CASTG	4 cut(s)	92, 169, 476, 841
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	510, 881, 909
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	4 cut(s)	92, 169, 476, 841
VpaK11BI	GGWCC	1 cut(s)	42
XapI	RAATTY	2 cut(s)	249, 640
XcmI	CCANNNNNNNNNTGG	2 cut(s)	36, 472
XmiI	GTMKAC	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.