Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000946.1

Orthogroup ID

OG0002307

Physical Location & Seq

Genomic Coordinates Forward (+)

101714 .. 106374

Gene Structure 4661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

atgaagtatgtgaagttggcttcccatttcttgacaaccaacctcttgaaactcttgttaattcttgtaatagcagtcattgtaattgaagcctctcagatgaatctagatcacattcatcagctccgactccaactctgttataatctggttagtgtcatcactagctctgctattcttgttttggcttccaccatttacattatgactcgacccaaatcggcttacctcgtagactactcgtgctataagccccctaacaatttgaaaatgaactaccagaagtttattaatcagtccagattgaccggggcctttgatgagtcctccctcgagtttcagcacaagattcttgagcggtctggccttggagagcagacatatctccctgaagcaatgcatttcattccgccgaggctgtcaatggcggcagcgcgtgagaaggcggagcaggtgatttttggagcgttggataatctatttgcaaatactaatgtcaatcctaaagacattgggattgttgttatgaattctagtctgtttaatccaattccttcattatcttctatgattgttaataagtacaaattgaggggaagtattaagagttataatttgggaggtatgggatgtagtgctggagttatagctgtagatcttgctaaggacctgttgcaagttcaaaagaacacttatgcagttgttgttagcactgagaatattactaaaaatgggtaccttgggaacaagaaatccatgttagtacaaaattgtttgtttcgtgtgggtgggtctgcggttttgctctcgaacaaatcatctgatatgtgtagggccaagtacaagcttgtgcatatcgtgaggaatcatatgggctcgaatgatagggcatataggtgtgcttatcaagaggaggacgatgctggcaaagctggggtttcgttgtcgaaggagctcatggcgattgctggtgtagcgctcaagactaatatcacagctttgctcggtcctcttgtcctacctataagcgaccagcttctcttcattgctactgtccttgcaaacaagttgttcaatgcgaaagtcaacccttacatcccgaatttcaaactcgttttcgatcatttttgcatccatgctggtggaaggtctgtgattgatgaccttgagaagaatttgaagcttctaccagttcatgttgaggcgtcacggatgacactccacaggtttgctaacacctcctctagctcgatttggtatgagttggcttacaccgaggcaaaggggaggatacaaaaggggaaccgtgtgtggcagattgcgctcggaagtggattcaagtgtaacagtgtagtctgggaggctctccggaaagcgaaaccttctcccagtagcccttgggaagattgcattcatagccccaccctccttgcaacagcccctgtcgtgaagctccacagccagccagaccagcacaccaggtcgagcgttgcccagcctcacccagtctcttgccttgcccaattgctgcccagcctcacccagtctctttccttgcccaattgctgcccagcctcacccagtcgccctccgcactactgcccccgcatcagcagccccgtgtccagcgcctgcgcagctcacccaacgcagcaagcctgcagcttgcccaccagcgtagaattaccatacaactccttatcactccgattccgacccacaacccgcttctggctctaccacccctgctccatcaacgcctccggtgacgtcgacccgcgagaaaagctctccatctcaaaacccgtctccggcgacgaaatcacccccatcgccccgtcaacttcatcctcagtcttcacggaagccgtcgcccccatccccgatgatgacgtggacgacgtggacgctatcaccaaccgacgcttcttgtccccccaaaccctccgcgagtctcctgtccttctccagcatcatacgtggcaaaatctcaggatcctcagcgactctctgaagaaacgccatcatctgctacgcctcgctatctccgtcactatttcttcgtcgtcaagctcctccaacttcccatacgctgtcgtcgtgttgagcaccgtcgtgagagtccaccaccgccttatccattctcaccatttggggaagaatttgcaggtcgcattgactgagcgagtgaccaccatctctgtcgactcgaagaggcagagttcactaccatcttcgctggacgcagattggactgcggttcgtcaggagttaggcgttggggactggacggcggcgtccatccatggaggtcattcctcaacagatctgcaaccgacctgtacggccggtgtggctgacccgaaattgcagcaatcagagtcgacgctggagcttcttcagcctccaagaaagtcaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0012505 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

807

Amino Acids

88.64

Weight (kDa)

9.19

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	67 - 356	1e-130	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	374 - 454	2.3e-09	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	376 - 434	9.5e-07	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16280 AT4G34510
fragaria_vesca	FvH4_2g08940 FvH4_2g08940
malus_domestica	MD05G1065300.v1.1 MD10G1075000.v1.1
prunus_persica	Prupe.8G096100_v2.0.a1
pyrus_communis	pycom05g05670 pycom10g05860
rosa_chinensis	RchiOBHm_Chr2g0164781 RchiOBHm_Chr6g0264551 RchiOBHm_Chr6g0266411 RchiOBHm_Chr6g0266471 RchiOBHm_Chr6g0266501
rosa_laevigata	RLG00000014100 RLG00000014245
rosa_multiflora	Rmu_co8165060.1_g000001 Rmu_sc0000578.1_g000014 Rmu_sc0000946.1_g000023 Rmu_sc0002235.1_g000037 Rmu_sc0003605.1_g000018 Rmu_sc0003859.1_g000044 Rmu_sc0008317.1_g000012
rosa_roxburghii	Rroxscaffold_175G00431910 Rroxscaffold_7G00201710
rosa_rugosa	Rorug06G0015600
rosa_samantha	Rh2BG589600 Rh2CG560200 Rh6AG133300 Rh6AG145800 Rh6AG146600 Rh6BG130800 Rh6BG146200 Rh6BG146600 Rh6CG129000 Rh6CG142700 Rh6DG116200 Rh6DG130800 Rh6DG131300
rosa_wichuraiana	Rw0G009730 Rw2G048020 Rw6G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	144, 612
AarI	CACCTGC	1 cut(s)	442
AasI	GACNNNNNNGTC	1 cut(s)	2296
AatII	GACGTC	1 cut(s)	1773
Acc16I	TGCGCA	1 cut(s)	1636
Acc36I	ACCTGC	2 cut(s)	442, 2158
Acc65I	GGTACC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	735
AccBSI	CCGCTC	1 cut(s)	358
AccI	GTMKAC	4 cut(s)	234, 1773, 2205, 2384
AccII	CGCG	3 cut(s)	436, 1780, 1950
AccIII	TCCGGA	1 cut(s)	1368
AclWI	GGATC	2 cut(s)	1990, 2003
AcoI	YGGCCR	1 cut(s)	2346
AcsI	RAATTY	4 cut(s)	529, 1102, 1174, 2161
AcuI	CTGAAG	3 cut(s)	411, 2033, 2384
AcyI	GRCGYC	3 cut(s)	1205, 1770, 2297
AfaI	GTAC	5 cut(s)	584, 737, 765, 842, 2344
AfeI	AGCGCT	1 cut(s)	978
AfiI	CCNNNNNNNGG	2 cut(s)	1731, 1811
AgsI	TTSAA	8 cut(s)	49, 89, 268, 683, 1075, 1108, 1180, 1339
AjiI	CACGTC	2 cut(s)	1894, 1903
AjnI	CCWGG	1 cut(s)	1478
AjuI	GAANNNNNNNTTGG	2 cut(s)	1910, 1942
AleI	CACNNNNGTG	1 cut(s)	2114
AloI	GAACNNNNNNTCC	2 cut(s)	737, 769
Alw21I	GWGCWC	2 cut(s)	957, 2111
Alw26I	GTCTC	4 cut(s)	1513, 1551, 1813, 1959
AlwI	GGATC	2 cut(s)	1990, 2003
AlwNI	CAGNNNCTG	2 cut(s)	1442, 1632
Ama87I	CYCGRG	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	1368
Aor51HI	AGCGCT	1 cut(s)	978
AoxI	GGCC	4 cut(s)	312, 364, 834, 2346
ApeKI	GCWGC	8 cut(s)	431, 1528, 1566, 1614, 1637, 1651, 1662, 2371
ApoI	RAATTY	4 cut(s)	529, 1102, 1174, 2161
AseI	ATTAAT	1 cut(s)	291
Asp718I	GGTACC	1 cut(s)	735
AspLEI	GCGC	5 cut(s)	436, 979, 1324, 1631, 1637
AspS9I	GGNCC	4 cut(s)	312, 667, 834, 1007
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	9 cut(s)	466, 1493, 1531, 1569, 1634, 1778, 1816, 1906, 2138
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	667, 1007
BamHI	GGATCC	1 cut(s)	1995
BanI	GGYRCC	1 cut(s)	735
BanII	GRGCYC	2 cut(s)	878, 957
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	1849
Bbv12I	GWGCWC	2 cut(s)	957, 2111
BbvCI	CCTCAGC	1 cut(s)	2000
BbvI	GCAGC	8 cut(s)	443, 1515, 1553, 1626, 1649, 1663, 1674, 2383
BccI	CCATC	8 cut(s)	1760, 1802, 1838, 1886, 2031, 2204, 2239, 2309
BceAI	ACGGC	3 cut(s)	1853, 2307, 2361
BciT130I	CCWGG	1 cut(s)	1480
BciVI	GTATCC	1 cut(s)	1284
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	4 cut(s)	1513, 1551, 1813, 1959
BfaI	CTAG	4 cut(s)	107, 165, 534, 1245
BfmI	CTRYAG	2 cut(s)	651, 1660
BfoI	RGCGCY	2 cut(s)	980, 1632
BfuAI	ACCTGC	2 cut(s)	442, 2158
BfuI	GTATCC	1 cut(s)	1284
BglI	GCCNNNNNGGC	1 cut(s)	2354
BglII	AGATCT	2 cut(s)	655, 2326
Bme1390I	CCNGG	2 cut(s)	310, 1480
Bme18I	GGWCC	2 cut(s)	667, 1007
BmeT110I	CYCGRG	1 cut(s)	332
BmgBI	CACGTC	2 cut(s)	1894, 1903
BmgT120I	GGNCC	4 cut(s)	312, 667, 834, 1007
BmiI	GGNNCC	4 cut(s)	313, 737, 1304, 1997
BmrFI	CCNGG	2 cut(s)	310, 1480
BmrI	ACTGGG	4 cut(s)	1383, 1499, 1537, 1575
BmsI	GCATC	4 cut(s)	910, 1140, 1617, 1981
BmuI	ACTGGG	4 cut(s)	1383, 1499, 1537, 1575
BpiI	GAAGAC	1 cut(s)	1849
BplI	GAGNNNNNCTC	2 cut(s)	1773, 1805
BpmI	CTGGAG	3 cut(s)	660, 1952, 2411
Bpu10I	CCTNAGC	2 cut(s)	663, 2000
BpuEI	CTTGAG	3 cut(s)	374, 965, 1187
BpuMI	CCSGG	1 cut(s)	310
BsaAI	YACGTR	1 cut(s)	1980
BsaHI	GRCGYC	3 cut(s)	1205, 1770, 2297
BsaJI	CCNNGG	7 cut(s)	309, 367, 413, 739, 1275, 1397, 2305
BsaWI	WCCGGW	2 cut(s)	1368, 1763
BsaXI	ACNNNNNCTCC	2 cut(s)	1733, 1763
Bsc4I	CCNNNNNNNGG	2 cut(s)	1731, 1811
Bse118I	RCCGGY	1 cut(s)	2348
Bse1I	ACTGG	6 cut(s)	1190, 1389, 1505, 1543, 1581, 2291
Bse3DI	GCAATG	2 cut(s)	402, 1044
BseAI	TCCGGA	1 cut(s)	1368
BseBI	CCWGG	1 cut(s)	1480
BseDI	CCNNGG	7 cut(s)	309, 367, 413, 739, 1275, 1397, 2305
BseGI	GGATG	7 cut(s)	635, 1095, 1131, 1218, 1847, 1878, 2301
BseLI	CCNNNNNNNGG	2 cut(s)	1731, 1811
BseMI	GCAATG	2 cut(s)	402, 1044
BseMII	CTCAG	6 cut(s)	110, 705, 1866, 2005, 2014, 2172
BseNI	ACTGG	6 cut(s)	1190, 1389, 1505, 1543, 1581, 2291
BseRI	GAGGAG	3 cut(s)	926, 1231, 2065
BseX3I	CGGCCG	1 cut(s)	2346
BseXI	GCAGC	8 cut(s)	443, 1515, 1553, 1626, 1649, 1663, 1674, 2383
BseYI	CCCAGC	4 cut(s)	932, 1494, 1532, 1570
Bsh1236I	CGCG	3 cut(s)	436, 1780, 1950
Bsh1285I	CGRYCG	1 cut(s)	2349
BshFI	GGCC	4 cut(s)	314, 366, 836, 2348
BshNI	GGYRCC	1 cut(s)	735
BsiEI	CGRYCG	1 cut(s)	2349
BsiHKAI	GWGCWC	2 cut(s)	957, 2111
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	5 cut(s)	309, 1369, 1764, 1812, 2349
BslFI	GGGAC	2 cut(s)	1918, 2297
BslI	CCNNNNNNNGG	2 cut(s)	1731, 1811
BsmAI	GTCTC	4 cut(s)	1513, 1551, 1813, 1959
BsmBI	CGTCTC	1 cut(s)	1813
BsmFI	GGGAC	2 cut(s)	1918, 2297
BsmI	GAATGC	1 cut(s)	1410
BsnI	GGCC	4 cut(s)	314, 366, 836, 2348
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	878, 957, 2111
Bsp13I	TCCGGA	1 cut(s)	1368
Bsp143I	GATC	5 cut(s)	109, 655, 1120, 1995, 2326
Bsp19I	CCATGG	1 cut(s)	2305
BspANI	GGCC	4 cut(s)	314, 366, 836, 2348
BspCNI	CTCAG	6 cut(s)	109, 706, 1865, 2004, 2013, 2173
BspEI	TCCGGA	1 cut(s)	1368
BspFNI	CGCG	3 cut(s)	436, 1780, 1950
BspLI	GGNNCC	4 cut(s)	313, 737, 1304, 1997
BspMAI	CTGCAG	1 cut(s)	1664
BspMI	ACCTGC	2 cut(s)	442, 2158
BspPI	GGATC	2 cut(s)	1990, 2003
BspT107I	GGYRCC	1 cut(s)	735
BsrBI	CCGCTC	1 cut(s)	358
BsrDI	GCAATG	2 cut(s)	402, 1044
BsrFI	RCCGGY	1 cut(s)	2348
BsrI	ACTGG	6 cut(s)	1190, 1389, 1505, 1543, 1581, 2291
BssAI	RCCGGY	1 cut(s)	2348
BssECI	CCNNGG	7 cut(s)	309, 367, 413, 739, 1275, 1397, 2305
BssMI	GATC	5 cut(s)	109, 655, 1120, 1995, 2326
BssNI	GRCGYC	3 cut(s)	1205, 1770, 2297
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	4 cut(s)	367, 739, 1397, 2305
Bst2BI	CACGAG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	1480
Bst4CI	ACNGT	4 cut(s)	1054, 1307, 1349, 2113
Bst6I	CTCTTC	2 cut(s)	1046, 2207
BstACI	GRCGYC	3 cut(s)	1205, 1770, 2297
BstBAI	YACGTR	1 cut(s)	1980
BstC8I	GCNNGC	6 cut(s)	925, 1463, 1633, 1656, 1660, 1667
BstDEI	CTNAG	7 cut(s)	96, 663, 714, 1852, 1991, 2000, 2181
BstDSI	CCRYGG	1 cut(s)	2305
BstF5I	GGATG	7 cut(s)	635, 1095, 1131, 1218, 1847, 1878, 2301
BstFNI	CGCG	3 cut(s)	436, 1780, 1950
BstH2I	RGCGCY	2 cut(s)	980, 1632
BstHHI	GCGC	5 cut(s)	436, 979, 1324, 1631, 1637
BstKTI	GATC	5 cut(s)	112, 658, 1123, 1998, 2329
BstMAI	GTCTC	4 cut(s)	1513, 1551, 1813, 1959
BstMBI	GATC	5 cut(s)	109, 655, 1120, 1995, 2326
BstMCI	CGRYCG	1 cut(s)	2349
BstNI	CCWGG	1 cut(s)	1480
BstSCI	CCNGG	2 cut(s)	308, 1478
BstSFI	CTRYAG	2 cut(s)	651, 1660
BstUI	CGCG	3 cut(s)	436, 1780, 1950
BstV1I	GCAGC	8 cut(s)	443, 1515, 1553, 1626, 1649, 1663, 1674, 2383
BstV2I	GAAGAC	1 cut(s)	1849
BstX2I	RGATCY	3 cut(s)	655, 1995, 2326
BstXI	CCANNNNNNTGG	1 cut(s)	1142
BstYI	RGATCY	3 cut(s)	655, 1995, 2326
BstZI	CGGCCG	1 cut(s)	2346
BsuI	GTATCC	1 cut(s)	1284
BsuRI	GGCC	4 cut(s)	314, 366, 836, 2348
BtgI	CCRYGG	1 cut(s)	2305
BtgZI	GCGATG	1 cut(s)	1816
BtrI	CACGTC	2 cut(s)	1894, 1903
BtsCI	GGATG	7 cut(s)	635, 1095, 1131, 1218, 1847, 1878, 2301
BtsIMutI	CAGTG	2 cut(s)	711, 1354
BveI	ACCTGC	2 cut(s)	442, 2158
Cac8I	GCNNGC	6 cut(s)	925, 1463, 1633, 1656, 1660, 1667
CaiI	CAGNNNCTG	2 cut(s)	1442, 1632
CfoI	GCGC	5 cut(s)	436, 979, 1324, 1631, 1637
Cfr10I	RCCGGY	1 cut(s)	2348
Cfr13I	GGNCC	4 cut(s)	312, 667, 834, 1007
CseI	GACGC	6 cut(s)	1194, 1916, 1932, 2252, 2286, 2395
CsiI	ACCWGGT	1 cut(s)	1478
Csp6I	GTAC	5 cut(s)	583, 736, 764, 841, 2343
CspCI	CAANNNNNGTGG	2 cut(s)	1411, 1446
CviAII	CATG	5 cut(s)	757, 958, 1136, 1196, 2306
CviQI	GTAC	5 cut(s)	583, 736, 764, 841, 2343
DdeI	CTNAG	7 cut(s)	96, 663, 714, 1852, 1991, 2000, 2181
DpnI	GATC	5 cut(s)	111, 657, 1122, 1997, 2328
DpnII	GATC	5 cut(s)	109, 655, 1120, 1995, 2326
DrdI	GACNNNNNNGTC	1 cut(s)	2296
DseDI	GACNNNNNNGTC	1 cut(s)	2296
EaeI	YGGCCR	1 cut(s)	2346
EagI	CGGCCG	1 cut(s)	2346
Eam1104I	CTCTTC	2 cut(s)	1046, 2207
EarI	CTCTTC	2 cut(s)	1046, 2207
EciI	GGCGGA	2 cut(s)	399, 461
Ecl136II	GAGCTC	1 cut(s)	955
EclXI	CGGCCG	1 cut(s)	2346
Eco130I	CCWWGG	4 cut(s)	367, 739, 1397, 2305
Eco24I	GRGCYC	2 cut(s)	878, 957
Eco47I	GGWCC	2 cut(s)	667, 1007
Eco47III	AGCGCT	1 cut(s)	978
Eco52I	CGGCCG	1 cut(s)	2346
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	3 cut(s)	411, 2033, 2384
Eco88I	CYCGRG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	955
EcoO109I	RGGNCCY	2 cut(s)	312, 667
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	1478
EcoT14I	CCWWGG	4 cut(s)	367, 739, 1397, 2305
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	2 cut(s)	878, 957
ErhI	CCWWGG	4 cut(s)	367, 739, 1397, 2305
Esp3I	CGTCTC	1 cut(s)	1813
FaeI	CATG	5 cut(s)	760, 961, 1139, 1199, 2309
FaqI	GGGAC	2 cut(s)	1918, 2297
FatI	CATG	5 cut(s)	756, 957, 1135, 1195, 2305
FauI	CCCGC	3 cut(s)	1613, 1733, 1785
FauNDI	CATATG	1 cut(s)	870
FblI	GTMKAC	4 cut(s)	234, 1773, 2205, 2384
FokI	GGATG	7 cut(s)	642, 1082, 1118, 1225, 1834, 1865, 2288
FriOI	GRGCYC	2 cut(s)	878, 957
FspBI	CTAG	4 cut(s)	107, 165, 534, 1245
FspI	TGCGCA	1 cut(s)	1636
GlaI	GCGC	5 cut(s)	435, 978, 1323, 1630, 1636
GsaI	CCCAGC	4 cut(s)	936, 1498, 1536, 1574
GsuI	CTGGAG	3 cut(s)	660, 1952, 2411
HaeII	RGCGCY	2 cut(s)	980, 1632
HaeIII	GGCC	4 cut(s)	314, 366, 836, 2348
HapII	CCGG	5 cut(s)	309, 1369, 1764, 1812, 2349
HgaI	GACGC	6 cut(s)	1194, 1916, 1932, 2252, 2286, 2395
HhaI	GCGC	5 cut(s)	436, 979, 1324, 1631, 1637
Hin1I	GRCGYC	3 cut(s)	1205, 1770, 2297
Hin1II	CATG	5 cut(s)	760, 961, 1139, 1199, 2309
Hin6I	GCGC	5 cut(s)	434, 977, 1322, 1629, 1635
HinP1I	GCGC	5 cut(s)	434, 977, 1322, 1629, 1635
HincII	GTYRAC	5 cut(s)	1087, 1774, 1842, 2206, 2385
HindII	GTYRAC	5 cut(s)	1087, 1774, 1842, 2206, 2385
HindIII	AAGCTT	2 cut(s)	845, 1181
HpaII	CCGG	5 cut(s)	309, 1369, 1764, 1812, 2349
HphI	GGTGA	9 cut(s)	466, 1493, 1531, 1569, 1634, 1778, 1816, 1906, 2138
Hpy188I	TCNGA	8 cut(s)	99, 128, 823, 1328, 1709, 1715, 2013, 2380
Hpy99I	CGWCG	9 cut(s)	1775, 1820, 1874, 1904, 1926, 2068, 2102, 2117, 2389
HpyAV	CCTTC	6 cut(s)	436, 564, 943, 1140, 1392, 1973
HpyCH4III	ACNGT	4 cut(s)	1054, 1307, 1349, 2113
HpyCH4IV	ACGT	4 cut(s)	1770, 1893, 1902, 1979
HpyF3I	CTNAG	7 cut(s)	96, 663, 714, 1852, 1991, 2000, 2181
HpySE526I	ACGT	4 cut(s)	1770, 1893, 1902, 1979
Hsp92I	GRCGYC	3 cut(s)	1205, 1770, 2297
Hsp92II	CATG	5 cut(s)	760, 961, 1139, 1199, 2309
HspAI	GCGC	5 cut(s)	434, 977, 1322, 1629, 1635
Kpn2I	TCCGGA	1 cut(s)	1368
KpnI	GGTACC	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	109, 655, 1120, 1995, 2326
LmnI	GCTCC	8 cut(s)	129, 448, 464, 952, 1458, 1754, 2078, 2392
Lsp1109I	GCAGC	8 cut(s)	443, 1515, 1553, 1626, 1649, 1663, 1674, 2383
LweI	GCATC	4 cut(s)	910, 1140, 1617, 1981
MabI	ACCWGGT	1 cut(s)	1478
MaeI	CTAG	4 cut(s)	107, 165, 534, 1245
MaeII	ACGT	4 cut(s)	1770, 1893, 1902, 1979
MaeIII	GTNAC	5 cut(s)	1206, 1343, 1766, 2050, 2188
MalI	GATC	5 cut(s)	111, 657, 1122, 1997, 2328
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	5 cut(s)	109, 655, 1120, 1995, 2326
MfeI	CAATTG	2 cut(s)	1523, 1561
MflI	RGATCY	3 cut(s)	655, 1995, 2326
MhlI	GDGCHC	3 cut(s)	878, 957, 2111
MlyI	GAGTC	8 cut(s)	123, 202, 332, 1961, 2000, 2130, 2201, 2390
MmeI	TCCRAC	5 cut(s)	151, 157, 450, 1738, 2103
Mph1103I	ATGCAT	1 cut(s)	402
MroI	TCCGGA	1 cut(s)	1368
MseI	TTAA	6 cut(s)	59, 291, 543, 576, 603, 2422
MslI	CAYNNNNRTG	3 cut(s)	895, 1140, 2114
MspI	CCGG	5 cut(s)	309, 1369, 1764, 1812, 2349
MspR9I	CCNGG	2 cut(s)	310, 1480
MunI	CAATTG	2 cut(s)	1523, 1561
Mva1269I	GAATGC	1 cut(s)	1410
MvaI	CCWGG	1 cut(s)	1480
MvnI	CGCG	3 cut(s)	436, 1780, 1950
NciI	CCSGG	1 cut(s)	310
NcoI	CCATGG	1 cut(s)	2305
NdeI	CATATG	1 cut(s)	870
NdeII	GATC	5 cut(s)	109, 655, 1120, 1995, 2326
NlaIII	CATG	5 cut(s)	760, 961, 1139, 1199, 2309
NlaIV	GGNNCC	4 cut(s)	313, 737, 1304, 1997
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	4 cut(s)	1206, 1766, 2050, 2188
NsbI	TGCGCA	1 cut(s)	1636
NsiI	ATGCAT	1 cut(s)	402
OliI	CACNNNNGTG	1 cut(s)	2114
PaeR7I	CTCGAG	1 cut(s)	332
PaqCI	CACCTGC	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	3 cut(s)	1899, 2046, 2097
PctI	GAATGC	1 cut(s)	1410
PfeI	GAWTC	5 cut(s)	103, 349, 865, 1335, 1710
PleI	GAGTC	8 cut(s)	123, 202, 331, 1960, 2000, 2129, 2201, 2389
PpsI	GAGTC	8 cut(s)	123, 202, 331, 1960, 2000, 2129, 2201, 2389
Ppu21I	YACGTR	1 cut(s)	1980
PpuMI	RGGWCCY	1 cut(s)	667
PshBI	ATTAAT	1 cut(s)	291
PsiI	TTATAA	2 cut(s)	144, 612
Psp124BI	GAGCTC	1 cut(s)	957
Psp5II	RGGWCCY	1 cut(s)	667
Psp6I	CCWGG	1 cut(s)	1478
PspFI	CCCAGC	4 cut(s)	932, 1494, 1532, 1570
PspGI	CCWGG	1 cut(s)	1478
PspN4I	GGNNCC	4 cut(s)	313, 737, 1304, 1997
PspPI	GGNCC	4 cut(s)	312, 667, 834, 1007
PspPPI	RGGWCCY	1 cut(s)	667
PspXI	VCTCGAGB	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	1664
PstNI	CAGNNNCTG	2 cut(s)	1442, 1632
PsuI	RGATCY	3 cut(s)	655, 1995, 2326
RsaI	GTAC	5 cut(s)	584, 737, 765, 842, 2344
RsaNI	GTAC	5 cut(s)	583, 736, 764, 841, 2343
RseI	CAYNNNNRTG	3 cut(s)	895, 1140, 2114
SacI	GAGCTC	1 cut(s)	957
SalI	GTCGAC	3 cut(s)	1772, 2204, 2383
SaqAI	TTAA	6 cut(s)	59, 291, 543, 576, 603, 2422
Sau3AI	GATC	5 cut(s)	109, 655, 1120, 1995, 2326
Sau96I	GGNCC	4 cut(s)	312, 667, 834, 1007
SchI	GAGTC	8 cut(s)	123, 202, 332, 1961, 2000, 2130, 2201, 2390
ScrFI	CCNGG	2 cut(s)	310, 1480
SduI	GDGCHC	3 cut(s)	878, 957, 2111
SexAI	ACCWGGT	1 cut(s)	1478
SfaNI	GCATC	4 cut(s)	910, 1140, 1617, 1981
SfcI	CTRYAG	2 cut(s)	651, 1660
Sfr274I	CTCGAG	1 cut(s)	332
SinI	GGWCC	2 cut(s)	667, 1007
SlaI	CTCGAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	3 cut(s)	895, 1140, 2114
SmlI	CTYRAG	4 cut(s)	332, 353, 980, 1166
SmoI	CTYRAG	4 cut(s)	332, 353, 980, 1166
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	4 cut(s)	107, 165, 534, 1245
SstI	GAGCTC	1 cut(s)	957
StyD4I	CCNGG	2 cut(s)	308, 1478
StyI	CCWWGG	4 cut(s)	367, 739, 1397, 2305
TaaI	ACNGT	4 cut(s)	1054, 1307, 1349, 2113
TaiI	ACGT	4 cut(s)	1773, 1896, 1905, 1982
TaqII	GACCGA	1 cut(s)	995
TatI	WGTACW	3 cut(s)	582, 763, 840
TauI	GCSGC	2 cut(s)	431, 2297
TfiI	GAWTC	5 cut(s)	103, 349, 865, 1335, 1710
Tru1I	TTAA	6 cut(s)	59, 291, 543, 576, 603, 2422
Tru9I	TTAA	6 cut(s)	59, 291, 543, 576, 603, 2422
TscAI	CASTG	2 cut(s)	718, 1354
TseFI	GTSAC	4 cut(s)	1206, 1766, 2050, 2188
TseI	GCWGC	8 cut(s)	431, 1528, 1566, 1614, 1637, 1651, 1662, 2371
Tsp45I	GTSAC	4 cut(s)	1206, 1766, 2050, 2188
TspGWI	ACGGA	3 cut(s)	1225, 1877, 2038
TspRI	CASTG	2 cut(s)	718, 1354
VpaK11BI	GGWCC	2 cut(s)	667, 1007
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	4 cut(s)	529, 1102, 1174, 2161
XbaI	TCTAGA	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	4 cut(s)	234, 1773, 2205, 2384
XspI	CTAG	4 cut(s)	107, 165, 534, 1245
ZraI	GACGTC	1 cut(s)	1771
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.