Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000961.1

Orthogroup ID

OG0006076

Physical Location & Seq

Genomic Coordinates Reverse (-)

44673 .. 46258

Gene Structure 1586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgaatcagaagttcggtggagggaagctgccgaccggcactccatcgctggcttggtccagcgtcgtcgtcgtcgtctcacttctcgccggagcctccggttgtgatgcatcaatcttacttgacgatacttcttctatcacaggcgaaaagaacgcactgcctaatcagaactctgtgagaggatatggagtcatagataatgccaaatctgaggtggagaaactatgtccgggtgtagtttcttgtgcagatatcgtcgccgtggctgctagggatgcttcagttgccgttggaggtccagactgggcggtgaagcttggaagaagagattcgaccacagcaagcaaaactctagctgaaagctcgcttcccagtttcttagacagcctcgaaagccttgctgacagattttctggtaatggcctcagtgtcagagatttggttgcactatccggtgcacattcaattggacaagctcagtgcttcacattccgcggtagaatctacagcaacactagtgacattgatgcaaactttgctcgtactcgcggacgtggttgtccagctgcaaataacgttggtaatgcaaatttggcaccacttgatttggtgacacctaatcaattggacaacaactacttcaagaacttgatccagaagaagggtcttcttgcatctgatcaagttctcttcagtggaggatccacagacagcattgtctcggagtatagctcaaaacctgcaaacttcaaggctgattttgccgccgccatgatcaagatgggaaacattaaccctctcactggctcaaatgggcagataagaaagatatgtagtgctctcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0006950 GO:0008150 GO:0009628 GO:0009987 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0050896 GO:0051716 GO:0070482 GO:0070887 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

283

Amino Acids

29.37

Weight (kDa)

8.18

Isoelectric Point (pI)

16.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	17 - 246	1.3e-67	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14540 AT1G14550
fragaria_vesca	FvH4_2g30540 FvH4_4g13860 FvH4_4g36130
malus_domestica	MD13G1011000.v1.1 MD13G1011200.v1.1
prunus_persica	Prupe.1G341900_v2.0.a1
pyrus_communis	pycom13g00920
rosa_chinensis	RchiOBHm_Chr4g0445821 RchiOBHm_Chr4g0445871
rosa_laevigata	RLG00000005706 RLG00000005707
rosa_multiflora	Rmu_co8195238.1_g000001 Rmu_sc0000961.1_g000005 Rmu_sc0000961.1_g000010
rosa_roxburghii	Rroxscaffold_5G00386290 Rroxscaffold_5G00386310
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426900 Rh4AG427100 Rh4BG437300 Rh4CG454100 Rh4DG435200 Rh4DG435400
rosa_wichuraiana	Rw4G036540 Rw4G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	561, 719
Acc36I	ACCTGC	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	598
AccII	CGCG	2 cut(s)	498, 552
AciI	CCGC	6 cut(s)	311, 496, 498, 552, 768, 771
AclI	AACGTT	1 cut(s)	579
AclWI	GGATC	3 cut(s)	649, 699, 712
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	2 cut(s)	267, 679
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	664, 806
AgsI	TTSAA	3 cut(s)	468, 646, 754
AhlI	ACTAGT	1 cut(s)	518
AjiI	CACGTC	1 cut(s)	557
AluBI	AGCT	7 cut(s)	28, 319, 359, 366, 479, 569, 735
AluI	AGCT	7 cut(s)	28, 319, 359, 366, 479, 569, 735
Alw21I	GWGCWC	2 cut(s)	463, 844
Alw26I	GTCTC	2 cut(s)	82, 727
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	649, 699, 712
AoxI	GGCC	1 cut(s)	424
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	3 cut(s)	28, 269, 569
ApoI	RAATTY	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	331
AspS9I	GGNCC	2 cut(s)	57, 299
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	2 cut(s)	325, 625
AvaII	GGWCC	2 cut(s)	57, 299
BaeGI	GKGCMC	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	662
Bbv12I	GWGCWC	2 cut(s)	463, 844
BbvI	GCAGC	3 cut(s)	15, 256, 556
BccI	CCATC	2 cut(s)	52, 778
BceAI	ACGGC	2 cut(s)	248, 275
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BclI	TGATCA	2 cut(s)	682, 777
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	82, 727
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	3 cut(s)	273, 356, 519
BfmI	CTRYAG	1 cut(s)	508
BfuAI	ACCTGC	1 cut(s)	751
BisI	GCNGC	5 cut(s)	29, 270, 570, 768, 771
BlsI	GCNGC	5 cut(s)	30, 271, 571, 769, 772
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	2 cut(s)	57, 299
BmgBI	CACGTC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	57, 299
BmiI	GGNNCC	3 cut(s)	94, 600, 706
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	2 cut(s)	316, 369
BmsI	GCATC	5 cut(s)	97, 119, 268, 520, 686
BmuI	ACTGGG	2 cut(s)	316, 369
BpiI	GAAGAC	1 cut(s)	662
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
BpuMI	CCSGG	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	264, 496
BsaWI	WCCGGW	2 cut(s)	98, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	664, 806
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	3 cut(s)	311, 375, 811
BseDI	CCNNGG	2 cut(s)	264, 496
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	664, 806
BseMII	CTCAG	3 cut(s)	204, 442, 494
BseNI	ACTGG	3 cut(s)	311, 375, 811
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	15, 256, 556
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	2 cut(s)	498, 552
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	598
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	463, 844
BsiSI	CCGG	5 cut(s)	36, 90, 99, 233, 456
BslI	CCNNNNNNNGG	2 cut(s)	664, 806
BsmAI	GTCTC	2 cut(s)	82, 727
BsmBI	CGTCTC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	2 cut(s)	463, 844
Bsp143I	GATC	4 cut(s)	654, 682, 704, 777
BspACI	CCGC	6 cut(s)	311, 496, 498, 552, 768, 771
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	3 cut(s)	205, 441, 493
BspFNI	CGCG	2 cut(s)	498, 552
BspLI	GGNNCC	3 cut(s)	94, 600, 706
BspMI	ACCTGC	1 cut(s)	751
BspPI	GGATC	3 cut(s)	649, 699, 712
BspT107I	GGYRCC	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	311, 375, 811
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	264, 496
BssMI	GATC	4 cut(s)	654, 682, 704, 777
Bst6I	CTCTTC	2 cut(s)	322, 698
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	51, 346, 368
BstDEI	CTNAG	4 cut(s)	213, 382, 428, 480
BstDSI	CCRYGG	2 cut(s)	264, 496
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	2 cut(s)	498, 552
BstKTI	GATC	4 cut(s)	657, 685, 707, 780
BstMAI	GTCTC	2 cut(s)	82, 727
BstMBI	GATC	4 cut(s)	654, 682, 704, 777
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	7 cut(s)	269, 278, 287, 396, 539, 596, 764
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	2 cut(s)	498, 552
BstV1I	GCAGC	3 cut(s)	15, 256, 556
BstV2I	GAAGAC	1 cut(s)	662
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	2 cut(s)	264, 496
BtgZI	GCGATG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	557
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	5 cut(s)	158, 436, 488, 703, 804
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	3 cut(s)	51, 346, 368
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	57, 299
Cfr42I	CCGCGG	1 cut(s)	499
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	546
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	1 cut(s)	775
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	4 cut(s)	213, 382, 428, 480
DpnI	GATC	4 cut(s)	656, 684, 706, 779
DpnII	GATC	4 cut(s)	654, 682, 704, 777
DrdI	GACNNNNNNGTC	2 cut(s)	561, 719
DseDI	GACNNNNNNGTC	2 cut(s)	561, 719
Eam1104I	CTCTTC	2 cut(s)	322, 698
EarI	CTCTTC	2 cut(s)	322, 698
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	57, 299
Eco57I	CTGAAG	2 cut(s)	267, 679
EcoRV	GATATC	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	1 cut(s)	778
FaiI	YATR	6 cut(s)	189, 197, 229, 732, 776, 835
FatI	CATG	1 cut(s)	774
FbaI	TGATCA	2 cut(s)	682, 777
Fnu4HI	GCNGC	5 cut(s)	29, 270, 570, 768, 771
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	5 cut(s)	29, 270, 570, 768, 771
FspBI	CTAG	3 cut(s)	273, 356, 519
GluI	GCNGC	5 cut(s)	29, 270, 570, 768, 771
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	5 cut(s)	36, 90, 99, 233, 456
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	4 cut(s)	4, 192, 332, 504
HpaII	CCGG	5 cut(s)	36, 90, 99, 233, 456
HphI	GGTGA	2 cut(s)	325, 625
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	6 cut(s)	9, 171, 214, 437, 682, 727
Hpy188III	TCNNGA	4 cut(s)	302, 646, 658, 781
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	5 cut(s)	68, 71, 74, 77, 263
HpyAV	CCTTC	1 cut(s)	658
HpyCH4IV	ACGT	2 cut(s)	556, 579
HpyCH4V	TGCA	9 cut(s)	110, 251, 449, 461, 533, 572, 590, 677, 746
HpyF10VI	GCNNNNNNNGC	7 cut(s)	269, 278, 287, 396, 539, 596, 764
HpyF3I	CTNAG	4 cut(s)	213, 382, 428, 480
HpySE526I	ACGT	2 cut(s)	556, 579
Hsp92II	CATG	1 cut(s)	778
Ksp22I	TGATCA	2 cut(s)	682, 777
KspI	CCGCGG	1 cut(s)	499
Kzo9I	GATC	4 cut(s)	654, 682, 704, 777
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	3 cut(s)	15, 256, 556
LweI	GCATC	5 cut(s)	97, 119, 268, 520, 686
MaeI	CTAG	3 cut(s)	273, 356, 519
MaeII	ACGT	2 cut(s)	556, 579
MaeIII	GTNAC	2 cut(s)	521, 613
MalI	GATC	4 cut(s)	656, 684, 706, 779
MboI	GATC	4 cut(s)	654, 682, 704, 777
MboII	GAAGA	6 cut(s)	126, 336, 339, 662, 673, 685
MfeI	CAATTG	2 cut(s)	468, 626
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	2 cut(s)	463, 844
MluCI	AATT	3 cut(s)	468, 592, 626
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	9 cut(s)	14, 106, 176, 208, 290, 401, 437, 695, 810
Mph1103I	ATGCAT	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	1 cut(s)	795
MspA1I	CMGCKG	2 cut(s)	498, 569
MspI	CCGG	5 cut(s)	36, 90, 99, 233, 456
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	2 cut(s)	468, 626
MvnI	CGCG	2 cut(s)	498, 552
MwoI	GCNNNNNNNGC	7 cut(s)	269, 278, 287, 396, 539, 596, 764
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	4 cut(s)	654, 682, 704, 777
NlaIII	CATG	1 cut(s)	778
NlaIV	GGNNCC	3 cut(s)	94, 600, 706
NmuCI	GTSAC	2 cut(s)	521, 613
NsiI	ATGCAT	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	4, 332, 504
PkrI	GCNGC	5 cut(s)	30, 271, 571, 769, 772
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp1406I	AACGTT	1 cut(s)	579
PspN4I	GGNNCC	3 cut(s)	94, 600, 706
PspPI	GGNCC	2 cut(s)	57, 299
PsuI	RGATCY	1 cut(s)	704
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SacII	CCGCGG	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	5 cut(s)	29, 270, 570, 768, 771
Sau3AI	GATC	4 cut(s)	654, 682, 704, 777
Sau96I	GGNCC	2 cut(s)	57, 299
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	463, 844
SfaNI	GCATC	5 cut(s)	97, 119, 268, 520, 686
SfcI	CTRYAG	1 cut(s)	508
Sfr303I	CCGCGG	1 cut(s)	499
SgrBI	CCGCGG	1 cut(s)	499
SinI	GGWCC	2 cut(s)	57, 299
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	3 cut(s)	468, 592, 626
SsiI	CCGC	6 cut(s)	311, 496, 498, 552, 768, 771
SspMI	CTAG	3 cut(s)	273, 356, 519
StyD4I	CCNGG	1 cut(s)	232
TaiI	ACGT	2 cut(s)	559, 582
TaqI	TCGA	2 cut(s)	335, 393
TasI	AATT	3 cut(s)	468, 592, 626
TauI	GCSGC	2 cut(s)	770, 773
TfiI	GAWTC	3 cut(s)	4, 332, 504
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	5 cut(s)	165, 436, 488, 703, 811
TseFI	GTSAC	2 cut(s)	521, 613
TseI	GCWGC	3 cut(s)	28, 269, 569
Tsp45I	GTSAC	2 cut(s)	521, 613
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	5 cut(s)	165, 436, 488, 703, 811
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	2 cut(s)	57, 299
XapI	RAATTY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	3 cut(s)	51, 214, 781
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	3 cut(s)	273, 356, 519
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.