Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001014.1

Orthogroup ID

OG0001733

Physical Location & Seq

Genomic Coordinates Reverse (-)

1733 .. 5874

Gene Structure 4142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001014.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgcttttatttacaagattcttcggctcatgggcactgactgcttttactggatcgaagaacatagatattattccagctgcaaatacatacgttcagatacggagtttggcatggcctgcagttcttgttggttgggttacccagagtgcaagtcttggcatgaaagattcatggggtcctttgaaggccttagctgtagccagtgctattaatggccttggtgatatactactctgcagtgttttaggctatggtattgctggcgcagcatgggcgacaatgctgtcacagattgttgcaggatacatgatgattgaatctttgaacaagaaaggatacaactcttatgctatttctgttccctcacccaaagaacttctaacactaattgggcttgctgctcccgtgttggtgacaatgatgtctaaggttgctttctactcactcattgtatattttgcaacatctatgggcacatatacaatggctgctcatcaggtcatgattcaaacattcatgatctgtacggtgtggggcgaacctctctctcaaacggcacagtcatttatgcctgagttgatatatggagtaaatcgtagtttgcccaaggctcgaatgttgctcaagtcacttgtcatcattggagcaatccttggtttggctcttggaactgttggaacatctgttccatggttttttcctaacatctttacacctgatcagaagatcatacaggagatgcacaaactactgataccattttttttggcattggctgtgacacccgtcattctcagctttgagggaacattgctggctggacgagatcttagattcattagtctatcaatgagtagctgcttctctttaggtgcacttctgctgctgcttgtgagtagccaaggatgtggtttagtaggctgctggtgggtacttgtagcatttcaatgggctcggcttttcctttctttacgacgccttatatcacctgatggcatactctactctgaagatatgagccggtataaactggaagaagtcagagctgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

351

Amino Acids

38.26

Weight (kDa)

9.18

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21340 AT2G21340
fragaria_vesca	FvH4_2g10111 FvH4_2g10111 FvH4_2g10111 FvH4_2g10111 FvH4_2g10111 FvH4_2g10111 FvH4_2g10111 FvH4_2g10111 FvH4_2g10111 FvH4_2g10111
malus_domestica	MD05G1056900.v1.1 MD10G1065100.v1.1
prunus_persica	Prupe.8G087100_v2.0.a1 Prupe.8G087100_v2.0.a1 Prupe.8G087300_v2.0.a1 Prupe.8G087300_v2.0.a1 Prupe.8G087300_v2.0.a1
pyrus_communis	pycom05g04860 pycom10g05090
rosa_chinensis	RchiOBHm_Chr6g0267081 RchiOBHm_Chr6g0267141
rosa_laevigata	RLG00000014027 RLG00000014030 RLG00000014035 RLG00000014040
rosa_multiflora	Rmu_sc0001014.1_g000002 Rmu_sc0002938.1_g000046 Rmu_sc0002938.1_g000054 Rmu_ssc0000388.1_g000006 Rmu_ssc0000388.1_g000017
rosa_roxburghii	Rroxscaffold_7G00201060 Rroxscaffold_7G00201160
rosa_rugosa	Rorug06G0029000 Rorug06G0029100 Rorug06G0029500 Rorug06G0029500 Rorug06G0029500
rosa_samantha	Rh6AG150600 Rh6AG151200 Rh6BG151400 Rh6BG151800 Rh6CG147500 Rh6DG135500 Rh6DG136000
rosa_wichuraiana	Rw6G013050 Rw6G013090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	286, 424
AclWI	GGATC	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	1032
AcyI	GRCGYC	1 cut(s)	979
AfaI	GTAC	2 cut(s)	529, 936
AfiI	CCNNNNNNNGG	1 cut(s)	661
AgsI	TTSAA	5 cut(s)	187, 320, 328, 512, 950
AloI	GAACNNNNNNTCC	4 cut(s)	672, 673, 704, 705
AluBI	AGCT	5 cut(s)	80, 197, 801, 861, 1049
AluI	AGCT	5 cut(s)	80, 197, 801, 861, 1049
Alw21I	GWGCWC	1 cut(s)	880
Alw44I	GTGCAC	1 cut(s)	876
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	3 cut(s)	116, 189, 217
ApaLI	GTGCAC	1 cut(s)	876
ApeKI	GCWGC	8 cut(s)	80, 269, 401, 491, 861, 886, 889, 924
AseI	ATTAAT	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	4 cut(s)	236, 360, 427, 981
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	3 cut(s)	37, 479, 880
BanII	GRGCYC	1 cut(s)	958
Bbv12I	GWGCWC	1 cut(s)	880
BbvI	GCAGC	8 cut(s)	67, 281, 388, 478, 848, 873, 876, 911
BccI	CCATC	1 cut(s)	989
BceAI	ACGGC	1 cut(s)	573
BciVI	GTATCC	2 cut(s)	299, 332
BclI	TGATCA	1 cut(s)	721
BfmI	CTRYAG	3 cut(s)	120, 198, 238
BfuI	GTATCC	2 cut(s)	299, 332
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	8 cut(s)	81, 270, 402, 492, 862, 887, 890, 925
BlsI	GCNGC	8 cut(s)	82, 271, 403, 493, 863, 888, 891, 926
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	1 cut(s)	732
BoxI	GACNNNNGTC	1 cut(s)	788
Bpu10I	CCTNAGC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	611
BsaHI	GRCGYC	1 cut(s)	979
BsaJI	CCNNGG	5 cut(s)	220, 609, 655, 692, 904
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse118I	RCCGGY	1 cut(s)	1023
Bse1I	ACTGG	3 cut(s)	55, 204, 1038
Bse3DI	GCAATG	1 cut(s)	812
BseDI	CCNNGG	5 cut(s)	220, 609, 655, 692, 904
BseGI	GGATG	1 cut(s)	914
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	2 cut(s)	567, 811
BseNI	ACTGG	3 cut(s)	55, 204, 1038
BseSI	GKGCMC	3 cut(s)	37, 479, 880
BseXI	GCAGC	8 cut(s)	67, 281, 388, 478, 848, 873, 876, 911
BshFI	GGCC	3 cut(s)	118, 191, 219
BsiHKAI	GWGCWC	1 cut(s)	880
BsiSI	CCGG	1 cut(s)	1024
BslI	CCNNNNNNNGG	1 cut(s)	661
BsnI	GGCC	3 cut(s)	118, 191, 219
Bsp1286I	GDGCHC	4 cut(s)	37, 479, 880, 958
Bsp143I	GATC	5 cut(s)	53, 522, 721, 729, 829
Bsp19I	CCATGG	1 cut(s)	692
BspANI	GGCC	3 cut(s)	118, 191, 219
BspCNI	CTCAG	2 cut(s)	568, 810
BspHI	TCATGA	2 cut(s)	504, 519
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	2 cut(s)	124, 242
BspPI	GGATC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	1023
BsrI	ACTGG	3 cut(s)	55, 204, 1038
BssAI	RCCGGY	1 cut(s)	1023
BssECI	CCNNGG	5 cut(s)	220, 609, 655, 692, 904
BssMI	GATC	5 cut(s)	53, 522, 721, 729, 829
BssNI	GRCGYC	1 cut(s)	979
BssT1I	CCWWGG	5 cut(s)	220, 609, 655, 692, 904
Bst4CI	ACNGT	3 cut(s)	532, 564, 676
BstACI	GRCGYC	1 cut(s)	979
BstAPI	GCANNNNNTGC	2 cut(s)	41, 119
BstC8I	GCNNGC	4 cut(s)	120, 265, 399, 819
BstDEI	CTNAG	5 cut(s)	193, 429, 576, 797, 833
BstDSI	CCRYGG	1 cut(s)	692
BstEII	GGTNACC	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	914
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	5 cut(s)	56, 525, 724, 732, 832
BstMBI	GATC	5 cut(s)	53, 522, 721, 729, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 119, 269, 275
BstPAI	GACNNNNGTC	1 cut(s)	788
BstPI	GGTNACC	1 cut(s)	139
BstSFI	CTRYAG	3 cut(s)	120, 198, 238
BstSLI	GKGCMC	3 cut(s)	37, 479, 880
BstV1I	GCAGC	8 cut(s)	67, 281, 388, 478, 848, 873, 876, 911
BstX2I	RGATCY	1 cut(s)	829
BstXI	CCANNNNNNTGG	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	829
BsuI	GTATCC	2 cut(s)	299, 332
BsuRI	GGCC	3 cut(s)	118, 191, 219
BtgI	CCRYGG	1 cut(s)	692
BtsCI	GGATG	1 cut(s)	914
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	3 cut(s)	35, 211, 247
Cac8I	GCNNGC	4 cut(s)	120, 265, 399, 819
CciI	TCATGA	2 cut(s)	504, 519
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	1023
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	987
Csp6I	GTAC	2 cut(s)	528, 935
CviAII	CATG	9 cut(s)	30, 114, 163, 174, 273, 310, 505, 520, 693
CviQI	GTAC	2 cut(s)	528, 935
DdeI	CTNAG	5 cut(s)	193, 429, 576, 797, 833
DpnI	GATC	5 cut(s)	55, 524, 723, 731, 831
DpnII	GATC	5 cut(s)	53, 522, 721, 729, 829
DrdI	GACNNNNNNGTC	2 cut(s)	286, 424
DseDI	GACNNNNNNGTC	2 cut(s)	286, 424
Eco130I	CCWWGG	5 cut(s)	220, 609, 655, 692, 904
Eco147I	AGGCCT	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	1032
Eco91I	GGTNACC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	139
EcoT14I	CCWWGG	5 cut(s)	220, 609, 655, 692, 904
EcoT38I	GRGCYC	1 cut(s)	958
ErhI	CCWWGG	5 cut(s)	220, 609, 655, 692, 904
FaeI	CATG	9 cut(s)	33, 117, 166, 177, 276, 313, 508, 523, 696
FatI	CATG	9 cut(s)	29, 113, 162, 173, 272, 309, 504, 519, 692
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	8 cut(s)	81, 270, 402, 492, 862, 887, 890, 925
FokI	GGATG	1 cut(s)	921
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	8 cut(s)	81, 270, 402, 492, 862, 887, 890, 925
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	8 cut(s)	81, 270, 402, 492, 862, 887, 890, 925
HaeIII	GGCC	3 cut(s)	118, 191, 219
HapII	CCGG	1 cut(s)	1024
HgaI	GACGC	1 cut(s)	987
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	979
Hin1II	CATG	9 cut(s)	33, 117, 166, 177, 276, 313, 508, 523, 696
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	5 cut(s)	18, 170, 320, 508, 837
HpaII	CCGG	1 cut(s)	1024
HphI	GGTGA	4 cut(s)	236, 360, 427, 981
Hpy166II	GTNNAC	1 cut(s)	878
Hpy188I	TCNGA	4 cut(s)	99, 726, 1012, 1046
Hpy188III	TCNNGA	2 cut(s)	505, 520
Hpy8I	GTNNAC	1 cut(s)	878
Hpy99I	CGWCG	1 cut(s)	981
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	3 cut(s)	532, 564, 676
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	8 cut(s)	83, 122, 152, 240, 302, 464, 745, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 119, 269, 275
HpyF3I	CTNAG	5 cut(s)	193, 429, 576, 797, 833
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	979
Hsp92II	CATG	9 cut(s)	33, 117, 166, 177, 276, 313, 508, 523, 696
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	5 cut(s)	53, 522, 721, 729, 829
LmnI	GCTCC	2 cut(s)	409, 647
Lsp1109I	GCAGC	8 cut(s)	67, 281, 388, 478, 848, 873, 876, 911
LweI	GCATC	1 cut(s)	732
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	5 cut(s)	139, 288, 415, 630, 781
MalI	GATC	5 cut(s)	55, 524, 723, 731, 831
MboI	GATC	5 cut(s)	53, 522, 721, 729, 829
MboII	GAAGA	5 cut(s)	13, 70, 739, 1025, 1049
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	4 cut(s)	37, 479, 880, 958
MluCI	AATT	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	3 cut(s)	376, 555, 799
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	949
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	4 cut(s)	41, 119, 269, 275
NcoI	CCATGG	1 cut(s)	692
NdeII	GATC	5 cut(s)	53, 522, 721, 729, 829
NlaIII	CATG	9 cut(s)	33, 117, 166, 177, 276, 313, 508, 523, 696
NlaIV	GGNNCC	1 cut(s)	180
NmeAIII	GCCGAG	1 cut(s)	937
NmuCI	GTSAC	4 cut(s)	288, 415, 630, 781
PagI	TCATGA	2 cut(s)	504, 519
PceI	AGGCCT	1 cut(s)	191
PfeI	GAWTC	5 cut(s)	18, 170, 320, 508, 837
PkrI	GCNGC	8 cut(s)	82, 271, 403, 493, 863, 888, 891, 926
PpuMI	RGGWCCY	1 cut(s)	179
PshAI	GACNNNNGTC	1 cut(s)	788
PshBI	ATTAAT	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	179
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	179
PspPPI	RGGWCCY	1 cut(s)	179
PstI	CTGCAG	2 cut(s)	124, 242
PsuI	RGATCY	1 cut(s)	829
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	2 cut(s)	529, 936
RsaNI	GTAC	2 cut(s)	528, 935
RseI	CAYNNNNRTG	1 cut(s)	949
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	8 cut(s)	81, 270, 402, 492, 862, 887, 890, 925
Sau3AI	GATC	5 cut(s)	53, 522, 721, 729, 829
Sau96I	GGNCC	1 cut(s)	179
SduI	GDGCHC	4 cut(s)	37, 479, 880, 958
SfaNI	GCATC	1 cut(s)	732
SfcI	CTRYAG	3 cut(s)	120, 198, 238
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	949
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	1 cut(s)	390
SseBI	AGGCCT	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	191
StyI	CCWWGG	5 cut(s)	220, 609, 655, 692, 904
TaaI	ACNGT	3 cut(s)	532, 564, 676
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	56, 616
TasI	AATT	1 cut(s)	390
TfiI	GAWTC	5 cut(s)	18, 170, 320, 508, 837
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	3 cut(s)	42, 211, 247
TseFI	GTSAC	4 cut(s)	288, 415, 630, 781
TseI	GCWGC	8 cut(s)	80, 269, 401, 491, 861, 886, 889, 924
Tsp45I	GTSAC	4 cut(s)	288, 415, 630, 781
TspDTI	ATGAA	4 cut(s)	162, 179, 508, 829
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	3 cut(s)	42, 211, 247
VneI	GTGCAC	1 cut(s)	876
VpaK11BI	GGWCC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.