Rorug06G0029000

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
3447443 .. 3448001
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0029000.1

Sequence Viewer

Length: 225 bp
ATGGCTACTACTAATGTCCCAAAGGGCCACTTTGCTATTTATGTAGGAGTGGAACAGAAAAATAGATTCATAATACCAATATCATACTTGAACCAACAGTGGTTCAAAGACTTGCTGATTTCCTCTGAAGAAAAGTTTGGATTCACTCATCCAATGGGTGGCATCACTATTCCATGCAGTGAACAGGCTTTCATTCGTTTGAGTTCTTGTTTACATTCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.42

Weight (kDa)

7.84

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 3 - 70 5.3e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 91, 106
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AoxI GGCC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 158
BshFI GGCC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 1 cut(s) 27
BspANI GGCC 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 99
BstF5I GGATG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 2 cut(s) 104, 184
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 1 cut(s) 174
CviJI RGCY 3 cut(s) 5, 27, 188
CviKI_1 RGCY 3 cut(s) 5, 27, 188
Eco57I CTGAAG 1 cut(s) 147
FaeI CATG 1 cut(s) 177
FaiI YATR 4 cut(s) 42, 71, 85, 175
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 2
FatI CATG 1 cut(s) 173
FokI GGATG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 27
Hin1II CATG 1 cut(s) 177
HinfI GANTC 2 cut(s) 66, 141
Hpy166II GTNNAC 2 cut(s) 182, 212
Hpy188I TCNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 182, 212
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 177
Hsp92II CATG 1 cut(s) 177
LpnPI CCDG 1 cut(s) 170
LweI GCATC 1 cut(s) 171
MboII GAAGA 1 cut(s) 140
MnlI CCTC 1 cut(s) 133
MseI TTAA 1 cut(s) 223
NlaIII CATG 1 cut(s) 177
PfeI GAWTC 2 cut(s) 66, 141
PflMI CCANNNNNTGG 1 cut(s) 158
PspPI GGNCC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 25
SfaNI GCATC 1 cut(s) 171
SgeI CNNG 5 cut(s) 100, 124, 186, 197, 219
TaaI ACNGT 1 cut(s) 99
TfiI GAWTC 2 cut(s) 66, 141
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
TscAI CASTG 2 cut(s) 104, 184
TspDTI ATGAA 2 cut(s) 58, 181
TspRI CASTG 2 cut(s) 104, 184
Van91I CCANNNNNTGG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.