Rh6AG151200

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001733
Physical Location & Seq
Reverse (-)
23708157 .. 23711005
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG151200.1

Sequence Viewer

Length: 723 bp
ATGAAAGATTCATGGGGTCCTTTGAAGGCCTTAGCTGTAGCCAGTGCTATTAATGGCCTTGGTGATATACTACTCTGCAGTGTTTTAGGCTATGGTATTGCTGGTGCAGCATGGGCGACAATGCTGTCACAGATTGTTGCAGGATACATGATGATTGAATCTTTGAACAAGAAAGGATACAACTCTTATGCTATTTCTGTTCCCTCACCCAAAGAACTTCTAACACTAATTGGGCTTGCTGCTCCAGTGTTGGTGACAATGATGTCTAAGGTTGCTTTCTACTCACTCATTGTATATTTTGCAACATCTATGGGCACATATACAATGGCTGCTCATCAGGTCATGATTCAAACATTCATGATCTGTACGGTGTGGGGCGAACCTCTCTCTCAAACGGCACAGTCATTTATGCCTGAGTTGATATATGGAGTAAATCGTAGTTTGCCCAAGGCTCGAATGTTGCTCAAGTCACTTGTCATCATTGGAGCAATCCTTGGTTTGGCTCTTGGAACTGTTGGAACATCTGTTCCATGGTTTTTTCCTAACATCTTTACACCTGATCAGAAGATCATACAGGAGATGCACAAACTACTGATACCATTTTTTTTGGCATTGGCTGTGACACCCGTCATTCTCAGCTTTGAGGGAACATTGCTGGTATGTTTGGTTTTATCTTCAGTGTTACGAATTTTCTCATATTCTTATTACTGGCATTGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

240

Amino Acids

26.16

Weight (kDa)

8.77

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 124, 262
AcsI RAATTY 1 cut(s) 687
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 4 cut(s) 25, 158, 166, 350
AloI GAACNNNNNNTCC 4 cut(s) 510, 511, 542, 543
AluBI AGCT 2 cut(s) 35, 639
AluI AGCT 2 cut(s) 35, 639
AoxI GGCC 2 cut(s) 27, 55
ApeKI GCWGC 3 cut(s) 107, 239, 329
ApoI RAATTY 1 cut(s) 687
AseI ATTAAT 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 3 cut(s) 74, 198, 265
AvaII GGWCC 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 317
BbvI GCAGC 3 cut(s) 119, 226, 316
BceAI ACGGC 1 cut(s) 411
BciVI GTATCC 2 cut(s) 137, 170
BclI TGATCA 1 cut(s) 559
BfmI CTRYAG 2 cut(s) 36, 76
BfuI GTATCC 2 cut(s) 137, 170
BisI GCNGC 3 cut(s) 108, 240, 330
BlsI GCNGC 3 cut(s) 109, 241, 331
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 570
BoxI GACNNNNGTC 1 cut(s) 626
BpmI CTGGAG 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 449
BsaJI CCNNGG 4 cut(s) 58, 447, 493, 530
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 3 cut(s) 42, 245, 713
Bse3DI GCAATG 1 cut(s) 650
BseDI CCNNGG 4 cut(s) 58, 447, 493, 530
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 1 cut(s) 650
BseMII CTCAG 2 cut(s) 405, 649
BseNI ACTGG 3 cut(s) 42, 245, 713
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 3 cut(s) 119, 226, 316
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 2 cut(s) 29, 57
BslI CCNNNNNNNGG 1 cut(s) 499
BsnI GGCC 2 cut(s) 29, 57
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 3 cut(s) 360, 559, 567
Bsp19I CCATGG 1 cut(s) 530
BspANI GGCC 2 cut(s) 29, 57
BspCNI CTCAG 2 cut(s) 406, 648
BspHI TCATGA 2 cut(s) 342, 357
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 650
BsrI ACTGG 3 cut(s) 42, 245, 713
BssECI CCNNGG 4 cut(s) 58, 447, 493, 530
BssMI GATC 3 cut(s) 360, 559, 567
BssT1I CCWWGG 4 cut(s) 58, 447, 493, 530
Bst4CI ACNGT 3 cut(s) 370, 402, 514
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 4 cut(s) 31, 267, 414, 635
BstDSI CCRYGG 1 cut(s) 530
BstKTI GATC 3 cut(s) 363, 562, 570
BstMBI GATC 3 cut(s) 360, 559, 567
BstMWI GCNNNNNNNGC 2 cut(s) 107, 113
BstPAI GACNNNNGTC 1 cut(s) 626
BstSFI CTRYAG 2 cut(s) 36, 76
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 3 cut(s) 119, 226, 316
BsuI GTATCC 2 cut(s) 137, 170
BsuRI GGCC 2 cut(s) 29, 57
BtgI CCRYGG 1 cut(s) 530
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 4 cut(s) 49, 85, 252, 684
Cac8I GCNNGC 1 cut(s) 237
CciI TCATGA 2 cut(s) 342, 357
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 366
CviAII CATG 6 cut(s) 12, 111, 148, 343, 358, 531
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 4 cut(s) 31, 267, 414, 635
DpnI GATC 3 cut(s) 362, 561, 569
DpnII GATC 3 cut(s) 360, 559, 567
DrdI GACNNNNNNGTC 2 cut(s) 124, 262
DseDI GACNNNNNNGTC 2 cut(s) 124, 262
Eco130I CCWWGG 4 cut(s) 58, 447, 493, 530
Eco147I AGGCCT 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 660
EcoO109I RGGNCCY 1 cut(s) 17
EcoT14I CCWWGG 4 cut(s) 58, 447, 493, 530
ErhI CCWWGG 4 cut(s) 58, 447, 493, 530
FaeI CATG 6 cut(s) 15, 114, 151, 346, 361, 534
FatI CATG 6 cut(s) 11, 110, 147, 342, 357, 530
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 108, 240, 330
Fsp4HI GCNGC 3 cut(s) 108, 240, 330
GluI GCNGC 3 cut(s) 108, 240, 330
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 2 cut(s) 29, 57
Hin1II CATG 6 cut(s) 15, 114, 151, 346, 361, 534
HinfI GANTC 3 cut(s) 8, 158, 346
HphI GGTGA 3 cut(s) 74, 198, 265
Hpy188I TCNGA 1 cut(s) 564
Hpy188III TCNNGA 2 cut(s) 343, 358
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 3 cut(s) 370, 402, 514
HpyCH4V TGCA 5 cut(s) 78, 107, 140, 302, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 113
HpyF3I CTNAG 4 cut(s) 31, 267, 414, 635
Hsp92II CATG 6 cut(s) 15, 114, 151, 346, 361, 534
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 3 cut(s) 360, 559, 567
LmnI GCTCC 2 cut(s) 247, 485
Lsp1109I GCAGC 3 cut(s) 119, 226, 316
LweI GCATC 1 cut(s) 570
MaeIII GTNAC 5 cut(s) 126, 253, 468, 619, 681
MalI GATC 3 cut(s) 362, 561, 569
MboI GATC 3 cut(s) 360, 559, 567
MboII GAAGA 2 cut(s) 577, 666
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 2 cut(s) 228, 687
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 3 cut(s) 214, 393, 637
MseI TTAA 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 107, 113
NcoI CCATGG 1 cut(s) 530
NdeII GATC 3 cut(s) 360, 559, 567
NlaIII CATG 6 cut(s) 15, 114, 151, 346, 361, 534
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 4 cut(s) 126, 253, 468, 619
PagI TCATGA 2 cut(s) 342, 357
PceI AGGCCT 1 cut(s) 29
PfeI GAWTC 3 cut(s) 8, 158, 346
PkrI GCNGC 3 cut(s) 109, 241, 331
PpuMI RGGWCCY 1 cut(s) 17
PshAI GACNNNNGTC 1 cut(s) 626
PshBI ATTAAT 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
PstI CTGCAG 1 cut(s) 80
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 3 cut(s) 108, 240, 330
Sau3AI GATC 3 cut(s) 360, 559, 567
Sau96I GGNCC 1 cut(s) 17
SduI GDGCHC 1 cut(s) 317
SetI ASST 6 cut(s) 37, 273, 342, 385, 559, 641
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 2 cut(s) 36, 76
SinI GGWCC 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 2 cut(s) 228, 687
SseBI AGGCCT 1 cut(s) 29
StuI AGGCCT 1 cut(s) 29
StyI CCWWGG 4 cut(s) 58, 447, 493, 530
TaaI ACNGT 3 cut(s) 370, 402, 514
TaqI TCGA 1 cut(s) 454
TasI AATT 2 cut(s) 228, 687
TfiI GAWTC 3 cut(s) 8, 158, 346
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 4 cut(s) 49, 85, 252, 684
TseFI GTSAC 4 cut(s) 126, 253, 468, 619
TseI GCWGC 3 cut(s) 107, 239, 329
Tsp45I GTSAC 4 cut(s) 126, 253, 468, 619
TspDTI ATGAA 2 cut(s) 17, 346
TspRI CASTG 4 cut(s) 49, 85, 252, 684
VpaK11BI GGWCC 1 cut(s) 17
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.