Rh6CG147500

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001733
Physical Location & Seq
Reverse (-)
19199602 .. 19206195
6594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG147500.1

Sequence Viewer

Length: 1272 bp
ATGAAGGAGATTGTCATGTTTACTGGGCCGGCTACCGGGATCTGGATCAGCGGCCCACTTATGAGTCTCATCGACACCGTCGTCGTCGGTCAGGGAAGCTCCATTGAGCTTGCCGCATTAGGGCCTGGAACTGTAATGTGCGATAATATGAGCTATGTTTTCATGTTCCTTTCTATTGCAACTTCCAATATCGTCGCTACTTCCCTTGCAAAAGGGGACAAAAATGAAGTGCAACATCACATATCCACCTTGCTCTTTGTTGCATTGACCTGTGGCTTCTTAATGCTTTTATTTACAAGATTCTTCGGCTCATGGGCACTGACTGCTTTTACTGGATCGAAGAACATAGATATTATTCCAGCTGCAAATACATACGTTCAGATACGGAGTTTGGCATGGCCTGCAGTTCTTGTTGGTTGGGTTACCCAGAGTGCAAGTCTTGGCATGAAAGATTCATGGGGTCCTTTGAAGGCCTTAGCTGTAGCCAGTGCTATTAATGGCCTTGGTGATATACTACTCTGCAGTGTTTTAGGCTATGGTATTGCTGGTGCAGCATGGGCGACAATGCTGTCACAGATTGTTGCAGGATACATGATGATTGAATCTTTGAACAAGAAAGGATACAACTCTTATGCTATTTCTGTTCCCTCACCCAAAGAACTTCTAACACTAATTGGGCTTGCTGCTCCAGTGTTGGTGACAATGATGTCTAAGGTTGCTTTCTACTCACTCATTGTCTATTTTGCAACATCTATGGGCACATATACAATGGCTGCTCATCAGGTCATGATTCAAACATTCATGATCTGTACGGTGTGGGGCGAACCTCTCTCTCAAACGGCACAGTCATTTATGCCTGAGTTGATATATGGAGTAAATCGTAGTTTGCCCAAGGCTCGAATGTTGCTCAAGTCACTTGTCATCATTGGAGCAATCCTTGGTTTGGCTCTTGGAACTGTTGGAACATCTGTTCCATGGTTTTTTCCTAACATCTTTACACCTGATCAGAAGATCATACAGGAGATGCACAAACTACTGATACCATTTTTTTTGGCATTGGCTGTGACACCCGTCATTCTCAGCTTTGAGGGAACATTGCTGGCTGGACGAGATCTTAGATTCATTAGTCTATCAATGAGTAGCTGCTTCTCTTTAGGTGCACTTCTGCTGCTGGTAGGTTTATGTCTTTCACTTCTCTGGTATTTTAGAAGAGTATTGATTCTTTATGCATTAACTACCATCCCAATTTTTGTTTCGTCAGCTTGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

423

Amino Acids

45.59

Weight (kDa)

8.61

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 19 - 166 9.4e-14 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 80, 568, 706
AciI CCGC 2 cut(s) 51, 114
AclWI GGATC 3 cut(s) 47, 53, 343
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 4 cut(s) 35, 42, 120, 943
AgsI TTSAA 4 cut(s) 469, 602, 610, 794
AjnI CCWGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 1237, 1269
AloI GAACNNNNNNTCC 4 cut(s) 954, 955, 986, 987
AluBI AGCT 8 cut(s) 99, 109, 153, 362, 479, 1083, 1143, 1262
AluI AGCT 8 cut(s) 99, 109, 153, 362, 479, 1083, 1143, 1262
Alw21I GWGCWC 1 cut(s) 1162
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 1 cut(s) 1158
AlwI GGATC 3 cut(s) 47, 53, 343
AoxI GGCC 6 cut(s) 26, 52, 122, 398, 471, 499
ApaLI GTGCAC 1 cut(s) 1158
ApeKI GCWGC 6 cut(s) 362, 551, 683, 773, 1143, 1168
AseI ATTAAT 1 cut(s) 495
AspS9I GGNCC 4 cut(s) 26, 53, 122, 461
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 3 cut(s) 518, 642, 709
AvaII GGWCC 1 cut(s) 461
BaeGI GKGCMC 3 cut(s) 319, 761, 1162
Bbv12I GWGCWC 1 cut(s) 1162
BbvI GCAGC 6 cut(s) 349, 563, 670, 760, 1130, 1155
BccI CCATC 1 cut(s) 1247
BceAI ACGGC 1 cut(s) 855
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 2 cut(s) 581, 614
BclI TGATCA 1 cut(s) 1003
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 71
BfmI CTRYAG 3 cut(s) 402, 480, 520
BfuI GTATCC 2 cut(s) 581, 614
BglII AGATCT 1 cut(s) 1111
BisI GCNGC 8 cut(s) 52, 114, 363, 552, 684, 774, 1144, 1169
BlsI GCNGC 8 cut(s) 53, 115, 364, 553, 685, 775, 1145, 1170
Bme1390I CCNGG 2 cut(s) 37, 126
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 4 cut(s) 26, 53, 122, 461
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 2 cut(s) 37, 126
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 1014
BmuI ACTGGG 1 cut(s) 33
BoxI GACNNNNGTC 1 cut(s) 1070
BpmI CTGGAG 1 cut(s) 672
Bpu10I CCTNAGC 1 cut(s) 475
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 4 cut(s) 502, 891, 937, 974
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 42, 120, 943
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 4 cut(s) 28, 337, 486, 689
Bse3DI GCAATG 1 cut(s) 1094
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 4 cut(s) 502, 891, 937, 974
BseGI GGATG 1 cut(s) 1239
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 4 cut(s) 35, 42, 120, 943
BseMI GCAATG 1 cut(s) 1094
BseMII CTCAG 2 cut(s) 849, 1093
BseNI ACTGG 4 cut(s) 28, 337, 486, 689
BseSI GKGCMC 3 cut(s) 319, 761, 1162
BseXI GCAGC 6 cut(s) 349, 563, 670, 760, 1130, 1155
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 6 cut(s) 28, 54, 124, 400, 473, 501
BsiHKAI GWGCWC 1 cut(s) 1162
BsiSI CCGG 2 cut(s) 29, 36
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 4 cut(s) 35, 42, 120, 943
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 6 cut(s) 28, 54, 124, 400, 473, 501
Bsp1286I GDGCHC 3 cut(s) 319, 761, 1162
Bsp143I GATC 7 cut(s) 39, 45, 335, 804, 1003, 1011, 1111
Bsp19I CCATGG 1 cut(s) 974
BspACI CCGC 2 cut(s) 51, 114
BspANI GGCC 6 cut(s) 28, 54, 124, 400, 473, 501
BspCNI CTCAG 2 cut(s) 850, 1092
BspHI TCATGA 2 cut(s) 786, 801
BspLI GGNNCC 1 cut(s) 462
BspMAI CTGCAG 2 cut(s) 406, 524
BspPI GGATC 3 cut(s) 47, 53, 343
BsrDI GCAATG 1 cut(s) 1094
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 4 cut(s) 28, 337, 486, 689
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 502, 891, 937, 974
BssMI GATC 7 cut(s) 39, 45, 335, 804, 1003, 1011, 1111
BssT1I CCWWGG 4 cut(s) 502, 891, 937, 974
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 5 cut(s) 79, 133, 814, 846, 958
Bst6I CTCTTC 1 cut(s) 1204
BstAPI GCANNNNNTGC 2 cut(s) 323, 401
BstC8I GCNNGC 5 cut(s) 30, 111, 402, 681, 1101
BstDEI CTNAG 5 cut(s) 475, 711, 858, 1079, 1115
BstDSI CCRYGG 1 cut(s) 974
BstEII GGTNACC 1 cut(s) 421
BstF5I GGATG 1 cut(s) 1239
BstKTI GATC 7 cut(s) 42, 48, 338, 807, 1006, 1014, 1114
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 7 cut(s) 39, 45, 335, 804, 1003, 1011, 1111
BstMWI GCNNNNNNNGC 4 cut(s) 323, 401, 551, 557
BstNI CCWGG 1 cut(s) 126
BstPAI GACNNNNGTC 1 cut(s) 1070
BstPI GGTNACC 1 cut(s) 421
BstSCI CCNGG 2 cut(s) 35, 124
BstSFI CTRYAG 3 cut(s) 402, 480, 520
BstSLI GKGCMC 3 cut(s) 319, 761, 1162
BstV1I GCAGC 6 cut(s) 349, 563, 670, 760, 1130, 1155
BstX2I RGATCY 2 cut(s) 39, 1111
BstYI RGATCY 2 cut(s) 39, 1111
BsuI GTATCC 2 cut(s) 581, 614
BsuRI GGCC 6 cut(s) 28, 54, 124, 400, 473, 501
BtgI CCRYGG 1 cut(s) 974
BtsCI GGATG 1 cut(s) 1239
BtsI GCAGTG 1 cut(s) 529
BtsIMutI CAGTG 4 cut(s) 317, 493, 529, 696
Cac8I GCNNGC 5 cut(s) 30, 111, 402, 681, 1101
CciI TCATGA 2 cut(s) 786, 801
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 4 cut(s) 26, 53, 122, 461
Csp6I GTAC 1 cut(s) 810
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 5 cut(s) 475, 711, 858, 1079, 1115
DpnI GATC 7 cut(s) 41, 47, 337, 806, 1005, 1013, 1113
DpnII GATC 7 cut(s) 39, 45, 335, 804, 1003, 1011, 1111
DrdI GACNNNNNNGTC 3 cut(s) 80, 568, 706
DseDI GACNNNNNNGTC 3 cut(s) 80, 568, 706
Eam1104I CTCTTC 1 cut(s) 1204
EarI CTCTTC 1 cut(s) 1204
Eco130I CCWWGG 4 cut(s) 502, 891, 937, 974
Eco147I AGGCCT 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 461
Eco91I GGTNACC 1 cut(s) 421
EcoO109I RGGNCCY 2 cut(s) 122, 461
EcoO65I GGTNACC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 4 cut(s) 502, 891, 937, 974
EcoT22I ATGCAT 1 cut(s) 1231
ErhI CCWWGG 4 cut(s) 502, 891, 937, 974
FaqI GGGAC 1 cut(s) 230
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 8 cut(s) 52, 114, 363, 552, 684, 774, 1144, 1169
FokI GGATG 1 cut(s) 1226
Fsp4HI GCNGC 8 cut(s) 52, 114, 363, 552, 684, 774, 1144, 1169
GluI GCNGC 8 cut(s) 52, 114, 363, 552, 684, 774, 1144, 1169
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 6 cut(s) 28, 54, 124, 400, 473, 501
HapII CCGG 2 cut(s) 29, 36
HinfI GANTC 7 cut(s) 64, 300, 452, 602, 790, 1119, 1219
HpaII CCGG 2 cut(s) 29, 36
HphI GGTGA 3 cut(s) 518, 642, 709
Hpy166II GTNNAC 2 cut(s) 21, 1160
Hpy188I TCNGA 2 cut(s) 381, 1008
Hpy188III TCNNGA 3 cut(s) 43, 787, 802
Hpy8I GTNNAC 2 cut(s) 21, 1160
Hpy99I CGWCG 4 cut(s) 83, 86, 89, 197
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 5 cut(s) 79, 133, 814, 846, 958
HpyCH4IV ACGT 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 401, 551, 557
HpyF3I CTNAG 5 cut(s) 475, 711, 858, 1079, 1115
HpySE526I ACGT 1 cut(s) 375
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 7 cut(s) 39, 45, 335, 804, 1003, 1011, 1111
LmnI GCTCC 3 cut(s) 104, 691, 929
Lsp1109I GCAGC 6 cut(s) 349, 563, 670, 760, 1130, 1155
LweI GCATC 1 cut(s) 1014
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 5 cut(s) 421, 570, 697, 912, 1063
MalI GATC 7 cut(s) 41, 47, 337, 806, 1005, 1013, 1113
MboI GATC 7 cut(s) 39, 45, 335, 804, 1003, 1011, 1111
MboII GAAGA 4 cut(s) 295, 352, 1021, 1221
MflI RGATCY 2 cut(s) 39, 1111
MhlI GDGCHC 3 cut(s) 319, 761, 1162
MluCI AATT 2 cut(s) 672, 1245
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 940
MnlI CCTC 3 cut(s) 658, 837, 1081
Mph1103I ATGCAT 1 cut(s) 1231
MroNI GCCGGC 1 cut(s) 28
MseI TTAA 3 cut(s) 281, 495, 1232
MspA1I CMGCKG 2 cut(s) 51, 362
MspI CCGG 2 cut(s) 29, 36
MspR9I CCNGG 2 cut(s) 37, 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 4 cut(s) 323, 401, 551, 557
NaeI GCCGGC 1 cut(s) 30
NciI CCSGG 1 cut(s) 37
NcoI CCATGG 1 cut(s) 974
NdeII GATC 7 cut(s) 39, 45, 335, 804, 1003, 1011, 1111
NgoMIV GCCGGC 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 4 cut(s) 570, 697, 912, 1063
NsiI ATGCAT 1 cut(s) 1231
PagI TCATGA 2 cut(s) 786, 801
PceI AGGCCT 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdiI GCCGGC 1 cut(s) 30
PfeI GAWTC 6 cut(s) 300, 452, 602, 790, 1119, 1219
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 8 cut(s) 53, 115, 364, 553, 685, 775, 1145, 1170
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PpuMI RGGWCCY 1 cut(s) 461
PshAI GACNNNNGTC 1 cut(s) 1070
PshBI ATTAAT 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 124
PspEI GGTNACC 1 cut(s) 421
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 4 cut(s) 26, 53, 122, 461
PspPPI RGGWCCY 1 cut(s) 461
PstI CTGCAG 2 cut(s) 406, 524
PsuI RGATCY 2 cut(s) 39, 1111
PsyI GACNNNGTC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
SaqAI TTAA 3 cut(s) 281, 495, 1232
SatI GCNGC 8 cut(s) 52, 114, 363, 552, 684, 774, 1144, 1169
Sau3AI GATC 7 cut(s) 39, 45, 335, 804, 1003, 1011, 1111
Sau96I GGNCC 4 cut(s) 26, 53, 122, 461
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 37, 126
SduI GDGCHC 3 cut(s) 319, 761, 1162
SfaNI GCATC 1 cut(s) 1014
SfcI CTRYAG 3 cut(s) 402, 480, 520
SinI GGWCC 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 908
SmoI CTYRAG 1 cut(s) 908
Sse9I AATT 2 cut(s) 672, 1245
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 2 cut(s) 51, 114
StuI AGGCCT 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 35, 124
StyI CCWWGG 4 cut(s) 502, 891, 937, 974
TaaI ACNGT 5 cut(s) 79, 133, 814, 846, 958
TaiI ACGT 1 cut(s) 378
TaqI TCGA 3 cut(s) 72, 338, 898
TaqII GACCGA 1 cut(s) 77
TasI AATT 2 cut(s) 672, 1245
TauI GCSGC 2 cut(s) 54, 116
TfiI GAWTC 6 cut(s) 300, 452, 602, 790, 1119, 1219
Tru1I TTAA 3 cut(s) 281, 495, 1232
Tru9I TTAA 3 cut(s) 281, 495, 1232
TscAI CASTG 4 cut(s) 324, 493, 529, 696
TseFI GTSAC 4 cut(s) 570, 697, 912, 1063
TseI GCWGC 6 cut(s) 362, 551, 683, 773, 1143, 1168
Tsp45I GTSAC 4 cut(s) 570, 697, 912, 1063
TspDTI ATGAA 7 cut(s) 17, 151, 240, 444, 461, 790, 1111
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 4 cut(s) 324, 493, 529, 696
Tth111I GACNNNGTC 1 cut(s) 77
VneI GTGCAC 1 cut(s) 1158
VpaK11BI GGWCC 1 cut(s) 461
VspI ATTAAT 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.