Rh6BG151800

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001733
Physical Location & Seq
Reverse (-)
24385373 .. 24392227
6855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG151800.1

Sequence Viewer

Length: 1611 bp
ATGCAAGCTAGAACCCTCCACCTCATTTCTCACTCTCTCTCTTCTCAACCTTGTTGTCTCTTCTCCACTACTCCTCCACCTTCTTCCTCTCTCTTCTTCAACCACACACCTCGATTTCCGAGCTCACGCTGCTTCTCCTCCTCAGCTTCAATACGACGCCGTCCGATTCGGCCTGTAATCGCCTGCATTGGCGATGGCGGGGACATTTCGGGGTCTGGAGAAGCTGCGGAGGTTAAAGGAGGAGAGTTGGAGAGTCAGAGTATATGGAATCAGATGAAGGAGATTGTCATGTTTACTGGGCCGGCTACCGGGATCTGGATCAGCGGCCCACTTATGAGTCTCATCGACACTGTCGTCGTCGGTCAGGGAAGCTCCATTGAGCTTGCTGCATTAGGGCCTGGAACTGTAATGTGCGATAATATGAGCTATGTTTTCATGTTCCTTTCTATTGCAACTTCCAATATCGTCGCTACTTCCCTTGCAAAAGGGGATAAAAATGAAGTGCAACATCACATATCCACCTTGCTCTTTGTTGCATTGACCTGTGGCTTCTTAATGATTTTATTTACAAGATTCTTTGGCTCTTGGGCACTGACTGCTTTTACTGGATCAAAGAACGTACATATTATTCCAGCAGCAAATACATACGTTCAGATACGGAGTTTGGCATGGCCTGCAGTTCTTGTTGGTTGGGTTACCCAGAGTGCAAGTCTTGGCATGAAAGATTCATGGGGTCCTTTGAAGGCCTTAGCTGTAGCCAGTGCTATTAATGGTGTTGGTGATATACTACTCTGCAGTGTTTTAGGCTATGGTATTGCTGGTGCAGCATGGGCGACAATGCTATCACAGATTGTTGCAGGATACATGATGATTGAATCTTTGAACAAGAAAGGATACAACTCTTATGCTATTTCTGTTCCCTCACCCAAAGAACTTCTAACACTAATTGGGCTTGCTGCTCCAGTGTTGGTGACAATGATGTCTAAGGTTGCTTTCTACTCGCTCATTGTATATTTTGCAACATCTATGGGCACATATACAATGGCTGCTCATCAGGTCATGATTCAAACATTCATGATCTGTACGGTGTGGGGCGAACCTCTCTCTCAAACTGCACAGTCATTTATGCCTCAGTTGATATATGGAGTAAATCGTAGTCTGCCCAAGGCTCGAATGTTGCTCAAGTCACTTGTCATCATTGGAGCAATCCTTGGTTTGGCTCTTGGAACTGTTGGAACATCTGTTCCATGGTTGTTTCCTAACATCTTTACACCTGATCAGAAGATCATACAGGAGATGCACAAACTACTGATACCATTTTTTTTAGCATTGGCTGTGACACCCGCCATTCTCAGCTTTGAGGGAACATTGCTGGCTGGACGAGATCTTAGATTCATTAGCCTATCAATGAGTAGCTGCTTCTCTTTAGGTGCACTTCTGCTGCTGCTTGTGAGTAGCCGAGGATGTGGTTTAGTAAGCTGCTGGTGGACACTTGTAGCATTTCAATGGGCTCGGCTTTTCCTTTCTTTACGACGCCTTATATCACCTGATGGCATACTCTACTCTGAAGATATGAGCCGGTATAAACTGGAAGAAGTCAGAGCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

536

Amino Acids

57.9

Weight (kDa)

9.0

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 110 - 258 1e-13 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 353, 979
AciI CCGC 4 cut(s) 198, 227, 324, 1344
AclWI GGATC 3 cut(s) 320, 326, 616
AcuI CTGAAG 1 cut(s) 1587
AcyI GRCGYC 2 cut(s) 157, 1534
AfaI GTAC 2 cut(s) 621, 1084
AfiI CCNNNNNNNGG 3 cut(s) 308, 315, 1216
AgsI TTSAA 7 cut(s) 100, 150, 742, 875, 883, 1067, 1505
AjnI CCWGG 1 cut(s) 397
AloI GAACNNNNNNTCC 4 cut(s) 1227, 1228, 1259, 1260
Alw21I GWGCWC 2 cut(s) 125, 1435
Alw26I GTCTC 2 cut(s) 62, 344
Alw44I GTGCAC 1 cut(s) 1431
AlwI GGATC 3 cut(s) 320, 326, 616
AoxI GGCC 6 cut(s) 170, 299, 325, 395, 671, 744
ApaLI GTGCAC 1 cut(s) 1431
AseI ATTAAT 1 cut(s) 768
AspS9I GGNCC 4 cut(s) 299, 326, 395, 734
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 4 cut(s) 791, 915, 982, 1536
AvaII GGWCC 1 cut(s) 734
BaeGI GKGCMC 3 cut(s) 592, 1034, 1435
BanII GRGCYC 2 cut(s) 125, 1513
Bbv12I GWGCWC 2 cut(s) 125, 1435
BbvCI CCTCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 188, 1544
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 2 cut(s) 854, 887
BclI TGATCA 1 cut(s) 1276
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 62, 344
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 3 cut(s) 675, 753, 793
BfuI GTATCC 2 cut(s) 854, 887
BglII AGATCT 1 cut(s) 1384
Bme1390I CCNGG 2 cut(s) 310, 399
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 4 cut(s) 299, 326, 395, 734
BmiI GGNNCC 1 cut(s) 735
BmrFI CCNGG 2 cut(s) 310, 399
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 1 cut(s) 1287
BmuI ACTGGG 1 cut(s) 306
BpmI CTGGAG 2 cut(s) 237, 945
Bpu10I CCTNAGC 2 cut(s) 142, 748
BpuEI CTTGAG 1 cut(s) 1166
BpuMI CCSGG 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 317
BsaHI GRCGYC 2 cut(s) 157, 1534
BsaJI CCNNGG 4 cut(s) 1164, 1210, 1247, 1459
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 315, 1216
Bse118I RCCGGY 2 cut(s) 301, 1578
Bse1I ACTGG 5 cut(s) 301, 610, 759, 962, 1593
Bse3DI GCAATG 1 cut(s) 1367
Bse8I GATNNNNATC 1 cut(s) 317
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 4 cut(s) 1164, 1210, 1247, 1459
BseGI GGATG 1 cut(s) 1469
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 3 cut(s) 308, 315, 1216
BseMI GCAATG 1 cut(s) 1367
BseMII CTCAG 3 cut(s) 156, 1145, 1366
BseNI ACTGG 5 cut(s) 301, 610, 759, 962, 1593
BseRI GAGGAG 4 cut(s) 63, 127, 130, 255
BseSI GKGCMC 3 cut(s) 592, 1034, 1435
BsgI GTGCAG 2 cut(s) 843, 1098
BshFI GGCC 6 cut(s) 172, 301, 327, 397, 673, 746
BsiHKAI GWGCWC 2 cut(s) 125, 1435
BsiSI CCGG 3 cut(s) 302, 309, 1579
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 3 cut(s) 308, 315, 1216
BsmAI GTCTC 2 cut(s) 62, 344
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 6 cut(s) 172, 301, 327, 397, 673, 746
Bsp1286I GDGCHC 5 cut(s) 125, 592, 1034, 1435, 1513
Bsp143I GATC 7 cut(s) 312, 318, 608, 1077, 1276, 1284, 1384
Bsp19I CCATGG 1 cut(s) 1247
BspACI CCGC 4 cut(s) 198, 227, 324, 1344
BspANI GGCC 6 cut(s) 172, 301, 327, 397, 673, 746
BspCNI CTCAG 3 cut(s) 155, 1144, 1365
BspHI TCATGA 2 cut(s) 1059, 1074
BspLI GGNNCC 1 cut(s) 735
BspMAI CTGCAG 2 cut(s) 679, 797
BspPI GGATC 3 cut(s) 320, 326, 616
BsrDI GCAATG 1 cut(s) 1367
BsrFI RCCGGY 2 cut(s) 301, 1578
BsrI ACTGG 5 cut(s) 301, 610, 759, 962, 1593
BssAI RCCGGY 2 cut(s) 301, 1578
BssECI CCNNGG 4 cut(s) 1164, 1210, 1247, 1459
BssMI GATC 7 cut(s) 312, 318, 608, 1077, 1276, 1284, 1384
BssNI GRCGYC 2 cut(s) 157, 1534
BssT1I CCWWGG 3 cut(s) 1164, 1210, 1247
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 5 cut(s) 352, 406, 1087, 1119, 1231
Bst6I CTCTTC 3 cut(s) 46, 65, 98
BstACI GRCGYC 2 cut(s) 157, 1534
BstAPI GCANNNNNTGC 2 cut(s) 596, 674
BstC8I GCNNGC 7 cut(s) 6, 184, 303, 384, 675, 954, 1374
BstDEI CTNAG 6 cut(s) 142, 748, 984, 1131, 1352, 1388
BstDSI CCRYGG 1 cut(s) 1247
BstEII GGTNACC 1 cut(s) 694
BstF5I GGATG 1 cut(s) 1469
BstKTI GATC 7 cut(s) 315, 321, 611, 1080, 1279, 1287, 1387
BstMAI GTCTC 2 cut(s) 62, 344
BstMBI GATC 7 cut(s) 312, 318, 608, 1077, 1276, 1284, 1384
BstMWI GCNNNNNNNGC 5 cut(s) 129, 596, 674, 824, 830
BstNI CCWGG 1 cut(s) 399
BstPI GGTNACC 1 cut(s) 694
BstSCI CCNGG 2 cut(s) 308, 397
BstSFI CTRYAG 3 cut(s) 675, 753, 793
BstSLI GKGCMC 3 cut(s) 592, 1034, 1435
BstX2I RGATCY 2 cut(s) 312, 1384
BstYI RGATCY 2 cut(s) 312, 1384
BsuI GTATCC 2 cut(s) 854, 887
BsuRI GGCC 6 cut(s) 172, 301, 327, 397, 673, 746
BtgI CCRYGG 1 cut(s) 1247
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 1469
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 5 cut(s) 348, 590, 766, 802, 969
Cac8I GCNNGC 7 cut(s) 6, 184, 303, 384, 675, 954, 1374
CciI TCATGA 2 cut(s) 1059, 1074
Cfr10I RCCGGY 2 cut(s) 301, 1578
Cfr13I GGNCC 4 cut(s) 299, 326, 395, 734
CseI GACGC 2 cut(s) 165, 1542
Csp6I GTAC 2 cut(s) 620, 1083
CviQI GTAC 2 cut(s) 620, 1083
DdeI CTNAG 6 cut(s) 142, 748, 984, 1131, 1352, 1388
DpnI GATC 7 cut(s) 314, 320, 610, 1079, 1278, 1286, 1386
DpnII GATC 7 cut(s) 312, 318, 608, 1077, 1276, 1284, 1384
DrdI GACNNNNNNGTC 2 cut(s) 353, 979
DseDI GACNNNNNNGTC 2 cut(s) 353, 979
Eam1104I CTCTTC 3 cut(s) 46, 65, 98
EarI CTCTTC 3 cut(s) 46, 65, 98
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 3 cut(s) 1164, 1210, 1247
Eco147I AGGCCT 1 cut(s) 746
Eco24I GRGCYC 2 cut(s) 125, 1513
Eco47I GGWCC 1 cut(s) 734
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 1587
Eco91I GGTNACC 1 cut(s) 694
EcoICRI GAGCTC 1 cut(s) 123
EcoO109I RGGNCCY 2 cut(s) 395, 734
EcoO65I GGTNACC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 3 cut(s) 1164, 1210, 1247
EcoT38I GRGCYC 2 cut(s) 125, 1513
ErhI CCWWGG 3 cut(s) 1164, 1210, 1247
FaqI GGGAC 1 cut(s) 215
FauI CCCGC 2 cut(s) 191, 1351
FbaI TGATCA 1 cut(s) 1276
FokI GGATG 1 cut(s) 1476
FriOI GRGCYC 2 cut(s) 125, 1513
FspBI CTAG 1 cut(s) 9
GsuI CTGGAG 2 cut(s) 237, 945
HaeIII GGCC 6 cut(s) 172, 301, 327, 397, 673, 746
HapII CCGG 3 cut(s) 302, 309, 1579
HgaI GACGC 2 cut(s) 165, 1542
Hin1I GRCGYC 2 cut(s) 157, 1534
HinfI GANTC 9 cut(s) 166, 253, 268, 337, 573, 725, 875, 1063, 1392
HpaII CCGG 3 cut(s) 302, 309, 1579
HphI GGTGA 4 cut(s) 791, 915, 982, 1536
Hpy166II GTNNAC 3 cut(s) 294, 1433, 1488
Hpy188I TCNGA 8 cut(s) 120, 165, 258, 273, 654, 1281, 1567, 1601
Hpy188III TCNNGA 4 cut(s) 216, 316, 1060, 1075
Hpy8I GTNNAC 3 cut(s) 294, 1433, 1488
Hpy99I CGWCG 5 cut(s) 159, 359, 362, 470, 1536
HpyAV CCTTC 3 cut(s) 90, 271, 736
HpyCH4III ACNGT 5 cut(s) 352, 406, 1087, 1119, 1231
HpyCH4IV ACGT 2 cut(s) 618, 648
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 596, 674, 824, 830
HpyF3I CTNAG 6 cut(s) 142, 748, 984, 1131, 1352, 1388
HpySE526I ACGT 2 cut(s) 618, 648
Hsp92I GRCGYC 2 cut(s) 157, 1534
KroI GCCGGC 1 cut(s) 301
KroNI GCCGGC 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 1276
Kzo9I GATC 7 cut(s) 312, 318, 608, 1077, 1276, 1284, 1384
LmnI GCTCC 3 cut(s) 377, 964, 1202
LweI GCATC 1 cut(s) 1287
MaeI CTAG 1 cut(s) 9
MaeII ACGT 2 cut(s) 618, 648
MaeIII GTNAC 4 cut(s) 694, 970, 1185, 1336
MalI GATC 7 cut(s) 314, 320, 610, 1079, 1278, 1286, 1386
MboI GATC 7 cut(s) 312, 318, 608, 1077, 1276, 1284, 1384
MboII GAAGA 8 cut(s) 33, 52, 75, 85, 88, 1294, 1580, 1604
MflI RGATCY 2 cut(s) 312, 1384
MhlI GDGCHC 5 cut(s) 125, 592, 1034, 1435, 1513
MluCI AATT 1 cut(s) 945
MlyI GAGTC 2 cut(s) 262, 346
MmeI TCCRAC 2 cut(s) 228, 1213
MroNI GCCGGC 1 cut(s) 301
MseI TTAA 3 cut(s) 234, 554, 768
MslI CAYNNNNRTG 1 cut(s) 1504
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 3 cut(s) 302, 309, 1579
MspR9I CCNGG 2 cut(s) 310, 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 5 cut(s) 129, 596, 674, 824, 830
NaeI GCCGGC 1 cut(s) 303
NciI CCSGG 1 cut(s) 310
NcoI CCATGG 1 cut(s) 1247
NdeII GATC 7 cut(s) 312, 318, 608, 1077, 1276, 1284, 1384
NgoMIV GCCGGC 1 cut(s) 301
NlaIV GGNNCC 1 cut(s) 735
NmeAIII GCCGAG 2 cut(s) 1484, 1492
NmuCI GTSAC 3 cut(s) 970, 1185, 1336
PagI TCATGA 2 cut(s) 1059, 1074
PceI AGGCCT 1 cut(s) 746
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdiI GCCGGC 1 cut(s) 303
PfeI GAWTC 7 cut(s) 166, 268, 573, 725, 875, 1063, 1392
PflFI GACNNNGTC 2 cut(s) 159, 350
PleI GAGTC 2 cut(s) 261, 345
PpsI GAGTC 2 cut(s) 261, 345
PpuMI RGGWCCY 1 cut(s) 734
PshBI ATTAAT 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 734
Psp6I CCWGG 1 cut(s) 397
PspEI GGTNACC 1 cut(s) 694
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 735
PspPI GGNCC 4 cut(s) 299, 326, 395, 734
PspPPI RGGWCCY 1 cut(s) 734
PstI CTGCAG 2 cut(s) 679, 797
PsuI RGATCY 2 cut(s) 312, 1384
PsyI GACNNNGTC 2 cut(s) 159, 350
RsaI GTAC 2 cut(s) 621, 1084
RsaNI GTAC 2 cut(s) 620, 1083
RseI CAYNNNNRTG 1 cut(s) 1504
SacI GAGCTC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 234, 554, 768
Sau3AI GATC 7 cut(s) 312, 318, 608, 1077, 1276, 1284, 1384
Sau96I GGNCC 4 cut(s) 299, 326, 395, 734
SchI GAGTC 2 cut(s) 262, 346
ScrFI CCNGG 2 cut(s) 310, 399
SduI GDGCHC 5 cut(s) 125, 592, 1034, 1435, 1513
SfaNI GCATC 1 cut(s) 1287
SfcI CTRYAG 3 cut(s) 675, 753, 793
SinI GGWCC 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 1504
SmlI CTYRAG 1 cut(s) 1181
SmoI CTYRAG 1 cut(s) 1181
Sse9I AATT 1 cut(s) 945
SseBI AGGCCT 1 cut(s) 746
SsiI CCGC 4 cut(s) 198, 227, 324, 1344
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 125
StuI AGGCCT 1 cut(s) 746
StyD4I CCNGG 2 cut(s) 308, 397
StyI CCWWGG 3 cut(s) 1164, 1210, 1247
TaaI ACNGT 5 cut(s) 352, 406, 1087, 1119, 1231
TaiI ACGT 2 cut(s) 621, 651
TaqI TCGA 3 cut(s) 112, 345, 1171
TaqII GACCGA 1 cut(s) 350
TasI AATT 1 cut(s) 945
TauI GCSGC 1 cut(s) 327
TfiI GAWTC 7 cut(s) 166, 268, 573, 725, 875, 1063, 1392
Tru1I TTAA 3 cut(s) 234, 554, 768
Tru9I TTAA 3 cut(s) 234, 554, 768
TscAI CASTG 5 cut(s) 355, 597, 766, 802, 969
TseFI GTSAC 3 cut(s) 970, 1185, 1336
Tsp45I GTSAC 3 cut(s) 970, 1185, 1336
TspDTI ATGAA 7 cut(s) 290, 424, 513, 717, 734, 1063, 1384
TspGWI ACGGA 1 cut(s) 673
TspRI CASTG 5 cut(s) 355, 597, 766, 802, 969
Tth111I GACNNNGTC 2 cut(s) 159, 350
VneI GTGCAC 1 cut(s) 1431
VpaK11BI GGWCC 1 cut(s) 734
VspI ATTAAT 1 cut(s) 768
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.