Rmu_sc0001438.1_g000056

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001438.1
OG0013781
Physical Location & Seq
Reverse (-)
200659 .. 201024
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001438.1_g000056.1.cds

Sequence Viewer

Length: 366 bp
atgattctttgcccttgcaaagaatgccgtaatgtaaaccatcaagatagtactactgtttttgaacatttggttataaaggggatggattccaagtacaagaaaagatcacattggacaaaacatggagatcagatagtaaatgctgaaagtgttgatcatgaaactaccaaggatgaggcatataacttatatagagctgcctactttatggatgaagattctgtccagcctacaaactctatggatgaagctattgtacagaggcaagatgatcgattcatgaagaacctaaaagatacagtgacaggacccgccccggatttcaccccgaaatccgaagtggccctgcggggcccaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

121

Amino Acids

13.89

Weight (kDa)

5.68

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AciI CCGC 2 cut(s) 315, 352
AfaI GTAC 3 cut(s) 52, 98, 261
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 2 cut(s) 200, 254
AluI AGCT 2 cut(s) 200, 254
AoxI GGCC 2 cut(s) 345, 355
ApaI GGGCCC 1 cut(s) 359
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 4 cut(s) 311, 346, 355, 356
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 243, 275
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 48, 79
BceAI ACGGC 1 cut(s) 12
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 320
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 4 cut(s) 311, 346, 355, 356
BmiI GGNNCC 3 cut(s) 313, 356, 357
BmrFI CCNGG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 171, 318
BseCI ATCGAT 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 171, 318
BseGI GGATG 4 cut(s) 90, 181, 220, 253
BseSI GKGCMC 1 cut(s) 359
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 2 cut(s) 347, 357
BshVI ATCGAT 1 cut(s) 277
BsiSI CCGG 1 cut(s) 320
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 2 cut(s) 347, 357
Bsp120I GGGCCC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 359
Bsp1407I TGTACA 1 cut(s) 259
Bsp143I GATC 4 cut(s) 107, 130, 157, 274
BspACI CCGC 2 cut(s) 315, 352
BspANI GGCC 2 cut(s) 347, 357
BspDI ATCGAT 1 cut(s) 277
BspHI TCATGA 2 cut(s) 160, 282
BspLI GGNNCC 3 cut(s) 313, 356, 357
BsrGI TGTACA 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 171, 318
BssMI GATC 4 cut(s) 107, 130, 157, 274
BssT1I CCWWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 58, 304
BstAPI GCANNNNNTGC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 4 cut(s) 90, 181, 220, 253
BstKTI GATC 4 cut(s) 110, 133, 160, 277
BstMBI GATC 4 cut(s) 107, 130, 157, 274
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 277
BsuRI GGCC 2 cut(s) 347, 357
BsuTUI ATCGAT 1 cut(s) 277
BtsCI GGATG 4 cut(s) 90, 181, 220, 253
BtsIMutI CAGTG 1 cut(s) 309
CciI TCATGA 2 cut(s) 160, 282
Cfr13I GGNCC 4 cut(s) 311, 346, 355, 356
ClaI ATCGAT 1 cut(s) 277
Csp6I GTAC 3 cut(s) 51, 97, 260
CviAII CATG 3 cut(s) 125, 161, 283
CviJI RGCY 5 cut(s) 200, 232, 254, 347, 357
CviKI_1 RGCY 5 cut(s) 200, 232, 254, 347, 357
CviQI GTAC 3 cut(s) 51, 97, 260
DdeI CTNAG 1 cut(s) 363
DpnI GATC 4 cut(s) 109, 132, 159, 276
DpnII GATC 4 cut(s) 107, 130, 157, 274
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 311
EcoO109I RGGNCCY 2 cut(s) 311, 355
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 3 cut(s) 128, 164, 286
FatI CATG 3 cut(s) 124, 160, 282
FauI CCCGC 2 cut(s) 322, 345
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 4 cut(s) 97, 188, 227, 260
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 347, 357
HapII CCGG 1 cut(s) 320
Hin1II CATG 3 cut(s) 128, 164, 286
HinfI GANTC 4 cut(s) 4, 89, 221, 279
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 135, 340
Hpy188III TCNNGA 3 cut(s) 44, 161, 283
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 58, 304
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 3 cut(s) 128, 164, 286
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 4 cut(s) 107, 130, 157, 274
LpnPI CCDG 4 cut(s) 242, 294, 333, 362
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 304
MalI GATC 4 cut(s) 109, 132, 159, 276
MboI GATC 4 cut(s) 107, 130, 157, 274
MboII GAAGA 2 cut(s) 230, 298
MhlI GDGCHC 1 cut(s) 359
MnlI CCTC 2 cut(s) 172, 258
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 320
NdeII GATC 4 cut(s) 107, 130, 157, 274
NlaIII CATG 3 cut(s) 128, 164, 286
NlaIV GGNNCC 3 cut(s) 313, 356, 357
NmuCI GTSAC 1 cut(s) 304
PagI TCATGA 2 cut(s) 160, 282
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 4 cut(s) 4, 89, 221, 279
PkrI GCNGC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 311
PsiI TTATAA 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 311
PspN4I GGNNCC 3 cut(s) 313, 356, 357
PspOMI GGGCCC 1 cut(s) 355
PspPI GGNCC 4 cut(s) 311, 346, 355, 356
PspPPI RGGWCCY 1 cut(s) 311
RsaI GTAC 3 cut(s) 52, 98, 261
RsaNI GTAC 3 cut(s) 51, 97, 260
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 4 cut(s) 107, 130, 157, 274
Sau96I GGNCC 4 cut(s) 311, 346, 355, 356
ScaI AGTACT 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 359
SetI ASST 4 cut(s) 202, 256, 294, 364
SinI GGWCC 1 cut(s) 311
SsiI CCGC 2 cut(s) 315, 352
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 58, 304
TaqI TCGA 1 cut(s) 277
TatI WGTACW 3 cut(s) 50, 96, 259
TfiI GAWTC 4 cut(s) 4, 89, 221, 279
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 5 cut(s) 177, 231, 264, 271, 299
TspRI CASTG 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.