Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013781

Physical Location & Seq

Genomic Coordinates Forward (+)

83538553 .. 83541818

Gene Structure 3266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG490000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGTGGCGCCGCCGATCAGGGCGAGCATGACCCGTCATTGTTGTGGTTCAACAACAACCAGGCCAGCACAAATAAAGTTGTCAAGGAATCGGTGAACATGGGTCCGGTGACTTCAGGACCCAGTACCACTAACCATCACATCTCGAAACTGATTCAGTTCGATAACCACCCTAGTTCTAGTAGCTTATCAGAGAATCCGAGCGCCATTGCCCAAGTACAATCTCAGAGCAATCACCACCACCAAGCCCAGCAGCAACATTGCTTGCATAAGTATTGCTTGAATCTAAAGATGATGGATAAAAAGTGGGTGTGGCTTCCCAGTTCAGAGTATGAGCAAAGAGCATTACATTTTGTGAAGACGGCTGAAAAGAATTTGGGATATCCTGCAATGATTCTTTGCCCTTGCAAAGATTGTCGTAATGTAAGCCATCAAGATAGTACTACTGTTTTTGAACATTTGGTTATAAAGGGGATGGATTCCAAGTACAAGAAAAGATCACATTGGACAAAACATGGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

174

Amino Acids

19.69

Weight (kDa)

8.58

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	106 - 173	2.8e-15	Transposase-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013781)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001438.1_g000056 Rmu_sc0001499.1_g000048 Rmu_sc0002784.1_g000045
rosa_roxburghii	Rroxscaffold_1G00058890
rosa_samantha	Rh1AG098200 Rh1CG232700 Rh2CG239500 Rh4AG198500 Rh4AG416400 Rh4BG427700 Rh4CG442600 Rh4DG423500 Rh5AG490000 Rh5AG490100 Rh6BG053000 Rh6BG053100 Rh6DG120700 Rh7CG255800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	8
AciI	CCGC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	4 cut(s)	127, 219, 442, 488
AgsI	TTSAA	3 cut(s)	52, 283, 455
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	11, 206
AspS9I	GGNCC	2 cut(s)	104, 119
AsuHPI	GGTGA	3 cut(s)	106, 121, 227
AvaII	GGWCC	2 cut(s)	104, 119
BanI	GGYRCC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	4 cut(s)	144, 289, 438, 469
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	1 cut(s)	62
BfaI	CTAG	2 cut(s)	174, 180
BfoI	RGCGCY	2 cut(s)	12, 207
BisI	GCNGC	2 cut(s)	12, 254
BlsI	GCNGC	2 cut(s)	13, 255
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	2 cut(s)	104, 119
BmgT120I	GGNCC	2 cut(s)	104, 119
BmiI	GGNNCC	3 cut(s)	10, 105, 121
BmrFI	CCNGG	1 cut(s)	62
BmrI	ACTGGG	2 cut(s)	117, 315
BmuI	ACTGGG	2 cut(s)	117, 315
BpiI	GAAGAC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	123, 321
Bse3DI	GCAATG	3 cut(s)	207, 259, 396
BseBI	CCWGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	480
BseMI	GCAATG	3 cut(s)	207, 259, 396
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	123, 321
BseXI	GCAGC	1 cut(s)	265
BseYI	CCCAGC	1 cut(s)	249
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	107
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	16, 497
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	10, 105, 121
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	3 cut(s)	207, 259, 396
BsrI	ACTGG	2 cut(s)	123, 321
BssMI	GATC	2 cut(s)	16, 497
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	448
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	26, 67, 266
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	480
BstH2I	RGCGCY	2 cut(s)	12, 207
BstHHI	GCGC	2 cut(s)	11, 206
BstKTI	GATC	2 cut(s)	19, 500
BstMBI	GATC	2 cut(s)	16, 497
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	480
Cac8I	GCNNGC	3 cut(s)	26, 67, 266
CfoI	GCGC	2 cut(s)	11, 206
Cfr13I	GGNCC	2 cut(s)	104, 119
Csp6I	GTAC	4 cut(s)	126, 218, 441, 487
CviAII	CATG	3 cut(s)	29, 100, 515
CviJI	RGCY	6 cut(s)	65, 186, 248, 316, 365, 429
CviKI_1	RGCY	6 cut(s)	65, 186, 248, 316, 365, 429
CviQI	GTAC	4 cut(s)	126, 218, 441, 487
DdeI	CTNAG	1 cut(s)	225
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	2 cut(s)	18, 499
DpnII	GATC	2 cut(s)	16, 497
Eco32I	GATATC	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	104, 119
Eco57I	CTGAAG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	60
EcoRV	GATATC	1 cut(s)	383
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
FaeI	CATG	3 cut(s)	32, 103, 518
FaiI	YATR	6 cut(s)	30, 101, 270, 333, 467, 516
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	3 cut(s)	28, 99, 514
Fnu4HI	GCNGC	2 cut(s)	12, 254
FokI	GGATG	1 cut(s)	487
Fsp4HI	GCNGC	2 cut(s)	12, 254
FspBI	CTAG	2 cut(s)	174, 180
GlaI	GCGC	2 cut(s)	10, 205
GluI	GCNGC	2 cut(s)	12, 254
GsaI	CCCAGC	1 cut(s)	253
HaeII	RGCGCY	2 cut(s)	12, 207
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	2 cut(s)	11, 206
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	32, 103, 518
Hin6I	GCGC	2 cut(s)	9, 204
HinP1I	GCGC	2 cut(s)	9, 204
HinfI	GANTC	6 cut(s)	89, 154, 196, 283, 394, 479
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	3 cut(s)	106, 121, 227
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	193, 201, 228, 328
Hpy188III	TCNNGA	3 cut(s)	117, 145, 434
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	3 cut(s)	268, 389, 408
HpyF3I	CTNAG	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	32, 103, 518
HspAI	GCGC	2 cut(s)	9, 204
KasI	GGCGCC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	16, 497
Lsp1109I	GCAGC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	174, 180
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	18, 499
MboI	GATC	2 cut(s)	16, 497
MboII	GAAGA	1 cut(s)	370
MluCI	AATT	1 cut(s)	373
Mly113I	GGCGCC	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	43
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
NarI	GGCGCC	1 cut(s)	9
NdeII	GATC	2 cut(s)	16, 497
NlaIII	CATG	3 cut(s)	32, 103, 518
NlaIV	GGNNCC	3 cut(s)	10, 105, 121
NmuCI	GTSAC	1 cut(s)	109
PfeI	GAWTC	6 cut(s)	89, 154, 196, 283, 394, 479
PkrI	GCNGC	2 cut(s)	13, 255
PluTI	GGCGCC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	10, 105, 121
PspPI	GGNCC	2 cut(s)	104, 119
PspPPI	RGGWCCY	1 cut(s)	119
RsaI	GTAC	4 cut(s)	127, 219, 442, 488
RsaNI	GTAC	4 cut(s)	126, 218, 441, 487
RseI	CAYNNNNRTG	1 cut(s)	43
SatI	GCNGC	2 cut(s)	12, 254
Sau3AI	GATC	2 cut(s)	16, 497
Sau96I	GGNCC	2 cut(s)	104, 119
ScaI	AGTACT	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	1 cut(s)	188
SfoI	GGCGCC	1 cut(s)	10
SinI	GGWCC	2 cut(s)	104, 119
SmiMI	CAYNNNNRTG	1 cut(s)	43
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	12
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	174, 180
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	146, 162
TasI	AATT	1 cut(s)	373
TatI	WGTACW	3 cut(s)	217, 440, 486
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	6 cut(s)	89, 154, 196, 283, 394, 479
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	104, 119
XapI	RAATTY	1 cut(s)	373
XspI	CTAG	2 cut(s)	174, 180
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.