Rh2CG239500

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013781
Physical Location & Seq
Reverse (-)
24766131 .. 24772157
6027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG239500.1

Sequence Viewer

Length: 411 bp
ATGTTCATTTCCACAAATCTCAGCCTCTCTTTGTGTTTGGAGGTGACGATTACAAGATTAAAGTACATGAAAACACTAAAAGATTATGTACGAAATCCTGCAAGACCTGAGGGGTGTATTGCAAAGTCCTACCTAGCAGAAGAGTGCATCGCTTTTTGTAGTCAGTTTCTTAAAAAATCCATACAAGTGGAGGAAAAAGAAGTTCGAAATGAAGATTTTGTCAATGACGTCATTCTTGAAGGTCGTCCAATTTCTAAGGCTACATCGATTACATTGACTGACAAAGAGAAAGACATAGCACATCGTTTTGTGCTACTGAACACAGCCATAATGGATCCATTTTTAGATATGCATTTGGAGGAGTTGCAAGCAAAAGACAAACGGCTTGCAAATAATGAAACCTTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.63

Weight (kDa)

5.75

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4218 PF13960 21 - 70 7.3e-12 Domain of unknown function (DUF4218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AclWI GGATC 2 cut(s) 329, 342
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 2 cut(s) 65, 90
AgsI TTSAA 1 cut(s) 239
AlwI GGATC 2 cut(s) 329, 342
AsuHPI GGTGA 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 108
BamHI GGATCC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 398
BfaI CTAG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 336
BmsI GCATC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 205
Bsa29I ATCGAT 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 228
Bse21I CCTNAGG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 266
BseMII CTCAG 2 cut(s) 34, 99
BseRI GAGGAG 1 cut(s) 374
BshVI ATCGAT 1 cut(s) 266
Bsp119I TTCGAA 1 cut(s) 205
Bsp143I GATC 1 cut(s) 334
BspCNI CTCAG 2 cut(s) 33, 100
BspDI ATCGAT 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 2 cut(s) 329, 342
BspT104I TTCGAA 1 cut(s) 205
BssMI GATC 1 cut(s) 334
BssNI GRCGYC 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 369, 387
BstDEI CTNAG 3 cut(s) 20, 108, 255
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 334
Bsu15I ATCGAT 1 cut(s) 266
Bsu36I CCTNAGG 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 266
BtgZI GCGATG 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 369, 387
ClaI ATCGAT 1 cut(s) 266
Csp6I GTAC 2 cut(s) 64, 89
CviAII CATG 1 cut(s) 67
CviJI RGCY 4 cut(s) 24, 260, 326, 385
CviKI_1 RGCY 4 cut(s) 24, 260, 326, 385
CviQI GTAC 2 cut(s) 64, 89
DdeI CTNAG 3 cut(s) 20, 108, 255
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco81I CCTNAGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 354
FaeI CATG 1 cut(s) 70
FaiI YATR 6 cut(s) 68, 87, 182, 296, 329, 350
FatI CATG 1 cut(s) 66
FspBI CTAG 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 1 cut(s) 70
HphI GGTGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 6 cut(s) 101, 122, 147, 352, 367, 389
HpyF3I CTNAG 3 cut(s) 20, 108, 255
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 334
LpnPI CCDG 2 cut(s) 111, 120
LweI GCATC 1 cut(s) 156
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 152, 224
MflI RGATCY 1 cut(s) 334
MluCI AATT 1 cut(s) 249
MnlI CCTC 5 cut(s) 34, 35, 103, 184, 352
Mph1103I ATGCAT 1 cut(s) 354
MseI TTAA 2 cut(s) 59, 171
MslI CAYNNNNRTG 1 cut(s) 185
NdeII GATC 1 cut(s) 334
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 43
NsiI ATGCAT 1 cut(s) 354
NspV TTCGAA 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 336
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 2 cut(s) 65, 90
RsaNI GTAC 2 cut(s) 64, 89
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 2 cut(s) 59, 171
Sau3AI GATC 1 cut(s) 334
SetI ASST 6 cut(s) 45, 109, 135, 231, 244, 404
SfaNI GCATC 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 1 cut(s) 249
SspMI CTAG 1 cut(s) 134
TaiI ACGT 1 cut(s) 231
TaqI TCGA 2 cut(s) 205, 266
TasI AATT 1 cut(s) 249
TatI WGTACW 1 cut(s) 63
Tru1I TTAA 2 cut(s) 59, 171
Tru9I TTAA 2 cut(s) 59, 171
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 83, 225, 411
XspI CTAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.