Rh6BG053000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013781
Physical Location & Seq
Forward (+)
8703882 .. 8705154
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG053000.1

Sequence Viewer

Length: 198 bp
ATGGTTGTGCTTTTGTGCGAAGCTGATCTCGAGTACGAGAATGGGGCAGGGAATTTTGTGAAAACGGTCACAAGGAACCTGGGAAACCCTGAAATGATCTTATGCCCTTGCATAGATTTTCGCAATGTAGATCATCAACATGGCAGTATTGTTGTTGAACATTTGGTTACAAGGGGAATGGAGGCCAAGTACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transpos_assoc Transposase_21

Protein Analysis

65

Amino Acids

7.32

Weight (kDa)

5.44

Isoelectric Point (pI)

-2.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 10 - 65 1.1e-10 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 2 cut(s) 35, 191
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 130
BshFI GGCC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 29
BsnI GGCC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 29
Bsp143I GATC 3 cut(s) 25, 96, 130
BspANI GGCC 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 3 cut(s) 25, 96, 130
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 67
BstKTI GATC 3 cut(s) 28, 99, 133
BstMBI GATC 3 cut(s) 25, 96, 130
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BsuRI GGCC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 34, 190
CviAII CATG 1 cut(s) 140
CviJI RGCY 2 cut(s) 23, 185
CviKI_1 RGCY 2 cut(s) 23, 185
CviQI GTAC 2 cut(s) 34, 190
DpnI GATC 3 cut(s) 27, 98, 132
DpnII GATC 3 cut(s) 25, 96, 130
Eco88I CYCGRG 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 78
FaeI CATG 1 cut(s) 143
FaiI YATR 3 cut(s) 103, 113, 141
FatI CATG 1 cut(s) 139
HaeIII GGCC 1 cut(s) 185
Hin1II CATG 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 111
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 3 cut(s) 25, 96, 130
LpnPI CCDG 4 cut(s) 33, 65, 92, 102
MaeIII GTNAC 2 cut(s) 67, 166
MalI GATC 3 cut(s) 27, 98, 132
MboI GATC 3 cut(s) 25, 96, 130
MluCI AATT 1 cut(s) 52
MnlI CCTC 1 cut(s) 175
MslI CAYNNNNRTG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
NdeII GATC 3 cut(s) 25, 96, 130
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 77
RsaI GTAC 2 cut(s) 35, 191
RsaNI GTAC 2 cut(s) 34, 190
RseI CAYNNNNRTG 1 cut(s) 138
Sau3AI GATC 3 cut(s) 25, 96, 130
ScrFI CCNGG 1 cut(s) 80
SetI ASST 2 cut(s) 25, 81
Sfr274I CTCGAG 1 cut(s) 29
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 30
TasI AATT 1 cut(s) 52
TatI WGTACW 1 cut(s) 189
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
XapI RAATTY 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.