Rh4AG416400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013781
Physical Location & Seq
Reverse (-)
71439083 .. 71454801
15719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG416400.1

Sequence Viewer

Length: 1176 bp
ATGGTATTGGAACTAATGATGAAGTTGTTCAACTCAGTGAAGATGACTCCGAGGATGAAATGGAAAGCATTGCAAAGGATTAAATTTCACTTTGAAGAGTCTAAGTATTTGGTTGTTGAGAATTATGATGAAAGGAAGAGTGAAAAAGAAAGTGAAATTTTTGGGGTGGTGTTGTTTTGGGTGTCGAAAATTGATGTTAGTTCCATATCAGTTGAGCACATGAGAATAGTGAAATTACAAATTGTTCTGTTGTCGTTCTGTTTTGATATACATTGCTTGCATAAGTACTGCTTGAATCTAAAGATGATGGATAAAGAGTGGGTGTGGCTTCCCAGATCTAGTTCAAAGTATGAGCAAAGAGCATTACATTTTGTGAAGACGGCTGAAAAGAATTTGGGATATCCTGCAATGATTCTTTGCCCTTGCAAAGATTGCCGTAATGTAAGCCATCAAGATAGTACTACTGTTTTTGAACATTTGGTTATAAAGGGGATGGATTCCAAGTACAAGAAAAGATCACATTGGACAAAACATGGAGATCAGATAGTAAATGCTAAAAGTGTTGATCATGAAACCACCAAGGATGAGGCATATAACTTATATAGAGCTGCCTACTTTATGGATGAAGATTCTGTCCAGCCTACAAACTCTATGGATGAAGCTACTGTACAGAGGCAAGATGATCAATTCATGAAGAACCTAGAAGATACAGAAACTCCTTTATACCCAGGTCGTCCAATTTCTAAGGCTACATCGATTACATTGACTGACAAAGAGAAAGACATAGCACATCGTTCTGTGCTACTGAACACAGCCATAATGGATCCATTTTTAGATATGCATTTGGAGGAGTTGCAAGCAAAAGACAGACGACTTGCAAATAATGAAACCTTACTTTGGAACCGGCATACCGAGAGATTTGCAGAATGGACAAAAAACAAGATTCCTATTGACTCGAAGAATCACTCAAACACATTAAGATGGTTGGCATATGGTCCTAGAAAGAGTGCACTATTAGTTAAAGGATACATTATCAATGGACAGCGGTTTCACACGAAGGATGTTGATAGAGAAACTCAAAATAGTGTAGTGACTTATGATGCAATAACCATGTGTAGAGCAAGTACAAAAGATATTGCACAATGGCTGATGTGGTTACTTACTACGGGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

391

Amino Acids

46.0

Weight (kDa)

8.62

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 105 - 179 1.8e-15 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AciI CCGC 1 cut(s) 1045
AclWI GGATC 2 cut(s) 818, 831
AcsI RAATTY 3 cut(s) 83, 156, 391
AfaI GTAC 5 cut(s) 287, 460, 506, 669, 1126
AfiI CCNNNNNNNGG 1 cut(s) 897
AgsI TTSAA 5 cut(s) 31, 95, 295, 345, 473
AjnI CCWGG 1 cut(s) 727
AluBI AGCT 2 cut(s) 608, 662
AluI AGCT 2 cut(s) 608, 662
Alw21I GWGCWC 2 cut(s) 219, 1012
Alw44I GTGCAC 1 cut(s) 1008
AlwI GGATC 2 cut(s) 818, 831
ApaLI GTGCAC 1 cut(s) 1008
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 3 cut(s) 83, 156, 391
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 995
AvaII GGWCC 1 cut(s) 995
BaeGI GKGCMC 1 cut(s) 1012
BamHI GGATCC 1 cut(s) 823
BarI GAAGNNNNNNTAC 2 cut(s) 651, 683
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 2 cut(s) 219, 1012
BbvI GCAGC 1 cut(s) 595
BccI CCATC 4 cut(s) 301, 456, 487, 975
BceAI ACGGC 2 cut(s) 396, 420
BcgI CGANNNNNNTGC 2 cut(s) 902, 936
BciT130I CCWGG 1 cut(s) 729
BciVI GTATCC 1 cut(s) 1019
BclI TGATCA 2 cut(s) 565, 682
BfaI CTAG 3 cut(s) 339, 701, 999
BfuI GTATCC 1 cut(s) 1019
BglII AGATCT 1 cut(s) 335
BisI GCNGC 1 cut(s) 609
BlsI GCNGC 1 cut(s) 610
BmcAI AGTACT 2 cut(s) 287, 460
Bme1390I CCNGG 1 cut(s) 729
Bme18I GGWCC 1 cut(s) 995
BmgT120I GGNCC 1 cut(s) 995
BmiI GGNNCC 2 cut(s) 825, 902
BmrFI CCNGG 1 cut(s) 729
BmsI GCATC 1 cut(s) 1090
BpiI GAAGAC 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 755
BsaJI CCNNGG 3 cut(s) 50, 579, 727
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 1 cut(s) 897
Bse118I RCCGGY 1 cut(s) 903
Bse3DI GCAATG 3 cut(s) 68, 271, 414
BseBI CCWGG 1 cut(s) 729
BseCI ATCGAT 1 cut(s) 755
BseDI CCNNGG 3 cut(s) 50, 579, 727
BseGI GGATG 6 cut(s) 60, 498, 589, 628, 661, 1066
BseLI CCNNNNNNNGG 1 cut(s) 897
BseMI GCAATG 3 cut(s) 68, 271, 414
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 863
BseSI GKGCMC 1 cut(s) 1012
BseXI GCAGC 1 cut(s) 595
BshVI ATCGAT 1 cut(s) 755
BsiHKAI GWGCWC 2 cut(s) 219, 1012
BsiSI CCGG 1 cut(s) 904
BslI CCNNNNNNNGG 1 cut(s) 897
Bsp1286I GDGCHC 2 cut(s) 219, 1012
Bsp1407I TGTACA 1 cut(s) 667
Bsp143I GATC 6 cut(s) 335, 515, 538, 565, 682, 823
BspACI CCGC 1 cut(s) 1045
BspCNI CTCAG 1 cut(s) 47
BspDI ATCGAT 1 cut(s) 755
BspHI TCATGA 2 cut(s) 568, 690
BspLI GGNNCC 2 cut(s) 825, 902
BspPI GGATC 2 cut(s) 818, 831
BsrDI GCAATG 3 cut(s) 68, 271, 414
BsrFI RCCGGY 1 cut(s) 903
BsrGI TGTACA 1 cut(s) 667
BssAI RCCGGY 1 cut(s) 903
BssECI CCNNGG 3 cut(s) 50, 579, 727
BssMI GATC 6 cut(s) 335, 515, 538, 565, 682, 823
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 2 cut(s) 466, 667
Bst6I CTCTTC 2 cut(s) 90, 131
BstAPI GCANNNNNTGC 1 cut(s) 432
BstAUI TGTACA 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 278, 858
BstDEI CTNAG 3 cut(s) 34, 102, 744
BstF5I GGATG 6 cut(s) 60, 498, 589, 628, 661, 1066
BstKTI GATC 6 cut(s) 338, 518, 541, 568, 685, 826
BstMBI GATC 6 cut(s) 335, 515, 538, 565, 682, 823
BstMWI GCNNNNNNNGC 1 cut(s) 432
BstNI CCWGG 1 cut(s) 729
BstSCI CCNGG 1 cut(s) 727
BstSLI GKGCMC 1 cut(s) 1012
BstV1I GCAGC 1 cut(s) 595
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 2 cut(s) 335, 823
BstYI RGATCY 2 cut(s) 335, 823
Bsu15I ATCGAT 1 cut(s) 755
BsuI GTATCC 1 cut(s) 1019
BsuTUI ATCGAT 1 cut(s) 755
BtsCI GGATG 6 cut(s) 60, 498, 589, 628, 661, 1066
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 278, 858
CciI TCATGA 2 cut(s) 568, 690
Cfr10I RCCGGY 1 cut(s) 903
Cfr13I GGNCC 1 cut(s) 995
ClaI ATCGAT 1 cut(s) 755
Csp6I GTAC 5 cut(s) 286, 459, 505, 668, 1125
CviAII CATG 5 cut(s) 220, 533, 569, 691, 1111
CviJI RGCY 9 cut(s) 328, 383, 447, 608, 640, 662, 749, 815, 1147
CviKI_1 RGCY 9 cut(s) 328, 383, 447, 608, 640, 662, 749, 815, 1147
CviQI GTAC 5 cut(s) 286, 459, 505, 668, 1125
DdeI CTNAG 3 cut(s) 34, 102, 744
DpnI GATC 6 cut(s) 337, 517, 540, 567, 684, 825
DpnII GATC 6 cut(s) 335, 515, 538, 565, 682, 823
Eam1104I CTCTTC 2 cut(s) 90, 131
EarI CTCTTC 2 cut(s) 90, 131
Eco130I CCWWGG 1 cut(s) 579
Eco32I GATATC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 727
EcoRV GATATC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 579
EcoT22I ATGCAT 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 5 cut(s) 223, 536, 572, 694, 1114
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 5 cut(s) 219, 532, 568, 690, 1110
FauNDI CATATG 1 cut(s) 991
FbaI TGATCA 2 cut(s) 565, 682
Fnu4HI GCNGC 1 cut(s) 609
FokI GGATG 6 cut(s) 67, 505, 596, 635, 668, 1073
Fsp4HI GCNGC 1 cut(s) 609
FspBI CTAG 3 cut(s) 339, 701, 999
GluI GCNGC 1 cut(s) 609
HapII CCGG 1 cut(s) 904
Hin1II CATG 5 cut(s) 223, 536, 572, 694, 1114
HinfI GANTC 9 cut(s) 46, 98, 295, 412, 497, 629, 943, 953, 961
HpaII CCGG 1 cut(s) 904
Hpy166II GTNNAC 1 cut(s) 1010
Hpy188I TCNGA 2 cut(s) 51, 543
Hpy188III TCNNGA 3 cut(s) 452, 569, 691
Hpy8I GTNNAC 1 cut(s) 1010
HpyAV CCTTC 1 cut(s) 1051
HpyCH4III ACNGT 2 cut(s) 466, 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 432
HpyF3I CTNAG 3 cut(s) 34, 102, 744
Hsp92II CATG 5 cut(s) 223, 536, 572, 694, 1114
Ksp22I TGATCA 2 cut(s) 565, 682
Kzo9I GATC 6 cut(s) 335, 515, 538, 565, 682, 823
LpnPI CCDG 6 cut(s) 346, 417, 650, 714, 741, 917
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 1 cut(s) 1090
MaeI CTAG 3 cut(s) 339, 701, 999
MaeIII GTNAC 2 cut(s) 1090, 1155
MalI GATC 6 cut(s) 337, 517, 540, 567, 684, 825
MboI GATC 6 cut(s) 335, 515, 538, 565, 682, 823
MboII GAAGA 8 cut(s) 52, 107, 148, 388, 638, 706, 716, 970
MflI RGATCY 2 cut(s) 335, 823
MhlI GDGCHC 2 cut(s) 219, 1012
MluCI AATT 9 cut(s) 83, 121, 156, 189, 233, 240, 391, 686, 738
MlyI GAGTC 3 cut(s) 40, 107, 947
MnlI CCTC 4 cut(s) 45, 580, 666, 841
Mph1103I ATGCAT 1 cut(s) 843
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 3 cut(s) 81, 977, 1020
MslI CAYNNNNRTG 1 cut(s) 979
MspA1I CMGCKG 1 cut(s) 1045
MspI CCGG 1 cut(s) 904
MspR9I CCNGG 1 cut(s) 729
MvaI CCWGG 1 cut(s) 729
MwoI GCNNNNNNNGC 1 cut(s) 432
NdeI CATATG 1 cut(s) 991
NdeII GATC 6 cut(s) 335, 515, 538, 565, 682, 823
NlaIII CATG 5 cut(s) 223, 536, 572, 694, 1114
NlaIV GGNNCC 2 cut(s) 825, 902
NmuCI GTSAC 1 cut(s) 1090
NsiI ATGCAT 1 cut(s) 843
PagI TCATGA 2 cut(s) 568, 690
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 6 cut(s) 295, 412, 497, 629, 943, 961
PkrI GCNGC 1 cut(s) 610
PleI GAGTC 3 cut(s) 40, 106, 947
PpsI GAGTC 3 cut(s) 40, 106, 947
PsiI TTATAA 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 727
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 2 cut(s) 825, 902
PspPI GGNCC 1 cut(s) 995
PsuI RGATCY 2 cut(s) 335, 823
RsaI GTAC 5 cut(s) 287, 460, 506, 669, 1126
RsaNI GTAC 5 cut(s) 286, 459, 505, 668, 1125
RseI CAYNNNNRTG 1 cut(s) 979
SaqAI TTAA 3 cut(s) 81, 977, 1020
SatI GCNGC 1 cut(s) 609
Sau3AI GATC 6 cut(s) 335, 515, 538, 565, 682, 823
Sau96I GGNCC 1 cut(s) 995
ScaI AGTACT 2 cut(s) 287, 460
SchI GAGTC 3 cut(s) 40, 107, 947
ScrFI CCNGG 1 cut(s) 729
SduI GDGCHC 2 cut(s) 219, 1012
SetI ASST 5 cut(s) 610, 664, 702, 733, 893
SfaNI GCATC 1 cut(s) 1090
SinI GGWCC 1 cut(s) 995
SmiMI CAYNNNNRTG 1 cut(s) 979
Sse9I AATT 9 cut(s) 83, 121, 156, 189, 233, 240, 391, 686, 738
SsiI CCGC 1 cut(s) 1045
SspMI CTAG 3 cut(s) 339, 701, 999
StyD4I CCNGG 1 cut(s) 727
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 2 cut(s) 466, 667
TaqI TCGA 3 cut(s) 185, 755, 956
TasI AATT 9 cut(s) 83, 121, 156, 189, 233, 240, 391, 686, 738
TatI WGTACW 5 cut(s) 285, 458, 504, 667, 1124
TfiI GAWTC 6 cut(s) 295, 412, 497, 629, 943, 961
Tru1I TTAA 3 cut(s) 81, 977, 1020
Tru9I TTAA 3 cut(s) 81, 977, 1020
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 1090
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 1 cut(s) 1090
TspDTI ATGAA 9 cut(s) 35, 71, 144, 585, 639, 672, 679, 707, 900
TspRI CASTG 1 cut(s) 42
VneI GTGCAC 1 cut(s) 1008
VpaK11BI GGWCC 1 cut(s) 995
XapI RAATTY 3 cut(s) 83, 156, 391
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 3 cut(s) 339, 701, 999
ZrmI AGTACT 2 cut(s) 287, 460
Zsp2I ATGCAT 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.