Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001499.1

Orthogroup ID

OG0013781

Physical Location & Seq

Genomic Coordinates Forward (+)

153737 .. 154424

Gene Structure 688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001499.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggattccaagtacaagaaaagatcacattggacaaaacatggagatcagatagtaaatgttgaaagtgttgatcaggaaaccaccaaggataaggcatataacttatatagagctgcctactttatggatgaagattatgtccagcctacaaactctatggatgaagctactgtacagaggcaagatgatcaattcatgaagaacctagaagatgcagaaactcctttatacctaggttgtcccaattacacaaagttgtcagccattgtagctttatatcgactcaaaagcaagagtggattgtctgatacccatttcaatgagcttttagagactattcatgacctgttaccgaaggacaatgttctaaaagagtataaggacttggacaattgtccaaaatgtggtgcttcaagatggaagaaaaataagcgtactaaggagatcagaaaaggtgttccagttaaggttctgagatattttcctatcattccgagatttagaaggatgttcaggtctgcacaaatggcagaagatttaaggtggcatttcagtaacaaaagcactgatggaaaaatacgtcaccatgtagattctttagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transpos_assoc Transposase_21

Protein Analysis

202

Amino Acids

23.78

Weight (kDa)

9.18

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013781)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001438.1_g000056 Rmu_sc0001499.1_g000048 Rmu_sc0002784.1_g000045
rosa_roxburghii	Rroxscaffold_1G00058890
rosa_samantha	Rh1AG098200 Rh1CG232700 Rh2CG239500 Rh4AG198500 Rh4AG416400 Rh4BG427700 Rh4CG442600 Rh4DG423500 Rh5AG490000 Rh5AG490100 Rh6BG053000 Rh6BG053100 Rh6DG120700 Rh7CG255800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	407
AfaI	GTAC	3 cut(s)	14, 177, 439
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	65, 322, 417
AluBI	AGCT	5 cut(s)	116, 170, 275, 328, 605
AluI	AGCT	5 cut(s)	116, 170, 275, 328, 605
Alw26I	GTCTC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	116
AspA2I	CCTAGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	578
AvrII	CCTAGG	1 cut(s)	235
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	414, 566
BclI	TGATCA	2 cut(s)	73, 190
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	209, 236
BisI	GCNGC	1 cut(s)	117
BlnI	CCTAGG	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	205
BoxI	GACNNNNGTC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	87, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	87, 235
BseGI	GGATG	3 cut(s)	136, 169, 516
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	1 cut(s)	464
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	228
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	23, 46, 73, 190, 447
BspCNI	CTCAG	1 cut(s)	468
BspHI	TCATGA	2 cut(s)	198, 343
BsrGI	TGTACA	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	464
BssECI	CCNNGG	2 cut(s)	87, 235
BssMI	GATC	5 cut(s)	23, 46, 73, 190, 447
BssT1I	CCWWGG	2 cut(s)	87, 235
Bst4CI	ACNGT	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	441, 476, 606
BstF5I	GGATG	3 cut(s)	136, 169, 516
BstKTI	GATC	5 cut(s)	26, 49, 76, 193, 450
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	5 cut(s)	23, 46, 73, 190, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 530
BstPAI	GACNNNNGTC	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	136, 169, 516
BtsIMutI	CAGTG	1 cut(s)	567
CciI	TCATGA	2 cut(s)	198, 343
Csp6I	GTAC	3 cut(s)	13, 176, 438
CviAII	CATG	4 cut(s)	41, 199, 344, 590
CviJI	RGCY	7 cut(s)	116, 148, 170, 266, 275, 328, 605
CviKI_1	RGCY	7 cut(s)	116, 148, 170, 266, 275, 328, 605
CviQI	GTAC	3 cut(s)	13, 176, 438
DdeI	CTNAG	3 cut(s)	441, 476, 606
DpnI	GATC	5 cut(s)	25, 48, 75, 192, 449
DpnII	GATC	5 cut(s)	23, 46, 73, 190, 447
Eco130I	CCWWGG	2 cut(s)	87, 235
EcoT14I	CCWWGG	2 cut(s)	87, 235
ErhI	CCWWGG	2 cut(s)	87, 235
FaeI	CATG	4 cut(s)	44, 202, 347, 593
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	4 cut(s)	40, 198, 343, 589
FbaI	TGATCA	2 cut(s)	73, 190
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	3 cut(s)	143, 176, 523
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	209, 236
GluI	GCNGC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	44, 202, 347, 593
HinfI	GANTC	3 cut(s)	5, 285, 596
HphI	GGTGA	1 cut(s)	578
Hpy188I	TCNGA	5 cut(s)	51, 310, 452, 477, 498
Hpy188III	TCNNGA	4 cut(s)	77, 199, 344, 417
HpyAV	CCTTC	2 cut(s)	352, 501
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	2 cut(s)	218, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 530
HpyF3I	CTNAG	3 cut(s)	441, 476, 606
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	4 cut(s)	44, 202, 347, 593
Ksp22I	TGATCA	2 cut(s)	73, 190
Kzo9I	GATC	5 cut(s)	23, 46, 73, 190, 447
LpnPI	CCDG	5 cut(s)	62, 158, 362, 477, 502
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	209, 236
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	3 cut(s)	351, 557, 584
MalI	GATC	5 cut(s)	25, 48, 75, 192, 449
MboI	GATC	5 cut(s)	23, 46, 73, 190, 447
MboII	GAAGA	5 cut(s)	146, 214, 224, 436, 548
MfeI	CAATTG	1 cut(s)	394
MluCI	AATT	3 cut(s)	194, 247, 394
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	1 cut(s)	174
MseI	TTAA	2 cut(s)	468, 542
MslI	CAYNNNNRTG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	272, 530
NdeII	GATC	5 cut(s)	23, 46, 73, 190, 447
NlaIII	CATG	4 cut(s)	44, 202, 347, 593
NmuCI	GTSAC	1 cut(s)	584
PagI	TCATGA	2 cut(s)	198, 343
PfeI	GAWTC	2 cut(s)	5, 596
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PshAI	GACNNNNGTC	1 cut(s)	396
RsaI	GTAC	3 cut(s)	14, 177, 439
RsaNI	GTAC	3 cut(s)	13, 176, 438
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	468, 542
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	5 cut(s)	23, 46, 73, 190, 447
SchI	GAGTC	1 cut(s)	279
SfaNI	GCATC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	194, 247, 394
SspMI	CTAG	2 cut(s)	209, 236
StyI	CCWWGG	2 cut(s)	87, 235
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	283
TasI	AATT	3 cut(s)	194, 247, 394
TatI	WGTACW	2 cut(s)	12, 175
TfiI	GAWTC	2 cut(s)	5, 596
Tru1I	TTAA	2 cut(s)	468, 542
Tru9I	TTAA	2 cut(s)	468, 542
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	5 cut(s)	147, 180, 187, 215, 332
TspRI	CASTG	1 cut(s)	574
Van91I	CCANNNNNTGG	1 cut(s)	407
XmaJI	CCTAGG	1 cut(s)	235
XspI	CTAG	2 cut(s)	209, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.