Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013781

Physical Location & Seq

Genomic Coordinates Reverse (-)

67896249 .. 67899949

Gene Structure 3701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG442600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGATGGATAAAGAGTGGGTGTGGCTTCCCAGATCTAGTTCAGAGTATGAGCAAAGAGCATTACATTTTGTGAAGACGGCTGAAAATAATTTGGGATATCCTGCAATGATTCTTTGCCCTTACAAAGATTGCCGTAATGTAAGCCATCAAGATAGTACTACTGTTTTTGAACATTTGGTTATAAAGGGGATGGATTCCAAGTACAAGAAAAGATCACATTGGACAAAACATGGAGATCAGATAGTAAATGCTGAAAGTGTTGATCATGAAACCACCAAGGATGAGGCATATAACTTATATAGAGCTGCCTACTTTATGGATGAAGATTCTGTCCAGCCTACAAACTCTATGGATGAAGCTACTGTACAGAGGCAAGATGATCAATTCATGAAGAACCTAGAAGATGCAGAAACTCCTTTATACCTAGGTCGTCCAATTTCTAAGGCTACATCGATTACATTGACTGACAAAGAGAAAGACATAGCACATCGTTCTGTGCTACTGAACACAGCCATAATGGATCCATTTTTAGATATGCATTTGGAGGAGTTGCAAGCAAAAGACAGACGACTTGCAAATAATGAAACCTTACTTTGGAACCGGCATACCGAGAGATTTGCAGAATGGACAAAAAACAAGATTCCTATTGACTCGAAGAATCACTCAAACACATTAAGATGGTTGGCATATGGTCCTAGAAAAAGTGCACTATTAGTTAAAGGATACATTATCAATGGACAGCGGTTTCACACGAAGGATGTTGATAGAGAAACTCAAAATAGTGGAGTGACTTATGATGCAATAACCATGTGTAGAGCAAGTGCAAAAGATATTGCACAAGTGGATGATGTGGTTACTTACTACGGGATATTGACGGATATCATATTACTAGACTATCATCTATTTTATGTTCCAGTCTTTAAGTGTCATTGGGCGAATAAAGGAAATGGTGTCAAGGAAGAAGATGGATTTACACTTGTAAACCTACAGCAAAGTCAAATATCATTTGCAAGAGATCCATATATCCTAGCATCTCAAGCAAAACAGGTTTTCTATTTAAGAGAAGATGATTCCTCTAATTGGTATGTTGTAATAAAGGCACCACCAAGAGGTTTCCATGAGTTGGAGACAAATGATGACAATGTAGAGGAAATTGAAATGGACATTGATGATTCTACTGAGACAGTTAGTTATGTCAGGGAGGATTGTGAGGGCCTACTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

408

Amino Acids

47.31

Weight (kDa)

5.15

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transpos_assoc	PF13963	4 - 78	1.2e-13	Transposase-associated domain
DUF4216	PF13952	298 - 364	2.7e-13	Domain of unknown function (DUF4216)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013781)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001438.1_g000056 Rmu_sc0001499.1_g000048 Rmu_sc0002784.1_g000045
rosa_roxburghii	Rroxscaffold_1G00058890
rosa_samantha	Rh1AG098200 Rh1CG232700 Rh2CG239500 Rh4AG198500 Rh4AG416400 Rh4BG427700 Rh4CG442600 Rh4DG423500 Rh5AG490000 Rh5AG490100 Rh6BG053000 Rh6BG053100 Rh6DG120700 Rh7CG255800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	1099
AccB7I	CCANNNNNTGG	1 cut(s)	1123
AciI	CCGC	1 cut(s)	742
AclWI	GGATC	3 cut(s)	515, 528, 1010
AfaI	GTAC	3 cut(s)	157, 203, 366
AfiI	CCNNNNNNNGG	4 cut(s)	594, 1080, 1109, 1123
AgsI	TTSAA	2 cut(s)	170, 1157
AluBI	AGCT	2 cut(s)	305, 359
AluI	AGCT	2 cut(s)	305, 359
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	2 cut(s)	1121, 1175
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	3 cut(s)	515, 528, 1010
AoxI	GGCC	1 cut(s)	1213
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	1 cut(s)	305
AspA2I	CCTAGG	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	692, 1213
AvaII	GGWCC	1 cut(s)	692
AvrII	CCTAGG	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	709
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	1099
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	4 cut(s)	153, 184, 672, 959
BceAI	ACGGC	2 cut(s)	93, 117
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BciVI	GTATCC	1 cut(s)	716
BclI	TGATCA	2 cut(s)	262, 379
BcoDI	GTCTC	2 cut(s)	1121, 1175
BfaI	CTAG	6 cut(s)	36, 398, 425, 696, 890, 1028
BfmI	CTRYAG	1 cut(s)	986
BfuI	GTATCC	1 cut(s)	716
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	1 cut(s)	306
BlnI	CCTAGG	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	307
BmcAI	AGTACT	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	692, 1213
BmiI	GGNNCC	3 cut(s)	522, 599, 1101
BmsI	GCATC	3 cut(s)	394, 787, 1040
BpiI	GAAGAC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	1020
Bsa29I	ATCGAT	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	276, 424
Bsc4I	CCNNNNNNNGG	4 cut(s)	594, 1080, 1109, 1123
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	914
Bse3DI	GCAATG	1 cut(s)	111
BseCI	ATCGAT	1 cut(s)	452
BseDI	CCNNGG	2 cut(s)	276, 424
BseGI	GGATG	6 cut(s)	195, 286, 325, 358, 763, 850
BseLI	CCNNNNNNNGG	4 cut(s)	594, 1080, 1109, 1123
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	1170
BseNI	ACTGG	1 cut(s)	914
BseRI	GAGGAG	1 cut(s)	560
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	1 cut(s)	1215
BshNI	GGYRCC	1 cut(s)	1099
BshVI	ATCGAT	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	1 cut(s)	601
BslI	CCNNNNNNNGG	4 cut(s)	594, 1080, 1109, 1123
BsmAI	GTCTC	2 cut(s)	1121, 1175
BsnI	GGCC	1 cut(s)	1215
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	7 cut(s)	32, 212, 235, 262, 379, 520, 1015
BspACI	CCGC	1 cut(s)	742
BspANI	GGCC	1 cut(s)	1215
BspCNI	CTCAG	1 cut(s)	1171
BspDI	ATCGAT	1 cut(s)	452
BspHI	TCATGA	2 cut(s)	265, 387
BspLI	GGNNCC	3 cut(s)	522, 599, 1101
BspPI	GGATC	3 cut(s)	515, 528, 1010
BspT107I	GGYRCC	1 cut(s)	1099
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	600
BsrGI	TGTACA	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	914
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	2 cut(s)	276, 424
BssMI	GATC	7 cut(s)	32, 212, 235, 262, 379, 520, 1015
BssT1I	CCWWGG	2 cut(s)	276, 424
Bst4CI	ACNGT	3 cut(s)	163, 364, 1186
BstAUI	TGTACA	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	2 cut(s)	441, 1179
BstF5I	GGATG	6 cut(s)	195, 286, 325, 358, 763, 850
BstKTI	GATC	7 cut(s)	35, 215, 238, 265, 382, 523, 1018
BstMAI	GTCTC	2 cut(s)	1121, 1175
BstMBI	GATC	7 cut(s)	32, 212, 235, 262, 379, 520, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	1037
BstSFI	CTRYAG	1 cut(s)	986
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	3 cut(s)	32, 520, 1015
BstYI	RGATCY	3 cut(s)	32, 520, 1015
Bsu15I	ATCGAT	1 cut(s)	452
BsuI	GTATCC	1 cut(s)	716
BsuRI	GGCC	1 cut(s)	1215
BsuTUI	ATCGAT	1 cut(s)	452
BtsCI	GGATG	6 cut(s)	195, 286, 325, 358, 763, 850
Cac8I	GCNNGC	1 cut(s)	555
CciI	TCATGA	2 cut(s)	265, 387
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	2 cut(s)	692, 1213
ClaI	ATCGAT	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	156, 202, 365
CviAII	CATG	5 cut(s)	230, 266, 388, 808, 1118
CviJI	RGCY	9 cut(s)	25, 80, 144, 305, 337, 359, 446, 512, 1215
CviKI_1	RGCY	9 cut(s)	25, 80, 144, 305, 337, 359, 446, 512, 1215
CviQI	GTAC	3 cut(s)	156, 202, 365
DdeI	CTNAG	2 cut(s)	441, 1179
DpnI	GATC	7 cut(s)	34, 214, 237, 264, 381, 522, 1017
DpnII	GATC	7 cut(s)	32, 212, 235, 262, 379, 520, 1015
Eco130I	CCWWGG	2 cut(s)	276, 424
Eco32I	GATATC	2 cut(s)	98, 880
Eco47I	GGWCC	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	1213
EcoRV	GATATC	2 cut(s)	98, 880
EcoT14I	CCWWGG	2 cut(s)	276, 424
EcoT22I	ATGCAT	1 cut(s)	540
ErhI	CCWWGG	2 cut(s)	276, 424
FaeI	CATG	5 cut(s)	233, 269, 391, 811, 1121
FatI	CATG	5 cut(s)	229, 265, 387, 807, 1117
FauNDI	CATATG	1 cut(s)	688
FbaI	TGATCA	2 cut(s)	262, 379
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	6 cut(s)	202, 293, 332, 365, 770, 857
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	6 cut(s)	36, 398, 425, 696, 890, 1028
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	1215
HapII	CCGG	1 cut(s)	601
Hin1II	CATG	5 cut(s)	233, 269, 391, 811, 1121
HinfI	GANTC	8 cut(s)	109, 194, 326, 640, 650, 658, 1070, 1172
HpaII	CCGG	1 cut(s)	601
Hpy166II	GTNNAC	2 cut(s)	707, 982
Hpy188I	TCNGA	2 cut(s)	43, 240
Hpy188III	TCNNGA	3 cut(s)	149, 266, 388
Hpy8I	GTNNAC	2 cut(s)	707, 982
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	3 cut(s)	163, 364, 1186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1037
HpyF3I	CTNAG	2 cut(s)	441, 1179
Hsp92II	CATG	5 cut(s)	233, 269, 391, 811, 1121
Ksp22I	TGATCA	2 cut(s)	262, 379
Kzo9I	GATC	7 cut(s)	32, 212, 235, 262, 379, 520, 1015
LpnPI	CCDG	7 cut(s)	43, 114, 347, 614, 927, 1031, 1183
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	3 cut(s)	394, 787, 1040
MaeI	CTAG	6 cut(s)	36, 398, 425, 696, 890, 1028
MaeIII	GTNAC	2 cut(s)	787, 853
MalI	GATC	7 cut(s)	34, 214, 237, 264, 381, 522, 1017
MboI	GATC	7 cut(s)	32, 212, 235, 262, 379, 520, 1015
MboII	GAAGA	8 cut(s)	85, 335, 403, 413, 667, 971, 974, 1076
MflI	RGATCY	3 cut(s)	32, 520, 1015
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	5 cut(s)	88, 383, 435, 1078, 1152
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	1 cut(s)	1104
MnlI	CCTC	8 cut(s)	277, 363, 538, 1084, 1103, 1141, 1195, 1204
Mph1103I	ATGCAT	1 cut(s)	540
MseI	TTAA	4 cut(s)	674, 717, 921, 1058
MslI	CAYNNNNRTG	1 cut(s)	676
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	1 cut(s)	1037
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	7 cut(s)	32, 212, 235, 262, 379, 520, 1015
NlaIII	CATG	5 cut(s)	233, 269, 391, 811, 1121
NlaIV	GGNNCC	3 cut(s)	522, 599, 1101
NmuCI	GTSAC	1 cut(s)	787
NsiI	ATGCAT	1 cut(s)	540
PagI	TCATGA	2 cut(s)	265, 387
PfeI	GAWTC	7 cut(s)	109, 194, 326, 640, 658, 1070, 1172
PflMI	CCANNNNNTGG	1 cut(s)	1123
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	522, 599, 1101
PspPI	GGNCC	2 cut(s)	692, 1213
PsuI	RGATCY	3 cut(s)	32, 520, 1015
RsaI	GTAC	3 cut(s)	157, 203, 366
RsaNI	GTAC	3 cut(s)	156, 202, 365
RseI	CAYNNNNRTG	1 cut(s)	676
SaqAI	TTAA	4 cut(s)	674, 717, 921, 1058
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	7 cut(s)	32, 212, 235, 262, 379, 520, 1015
Sau96I	GGNCC	2 cut(s)	692, 1213
ScaI	AGTACT	1 cut(s)	157
SchI	GAGTC	1 cut(s)	644
SduI	GDGCHC	1 cut(s)	709
SetI	ASST	9 cut(s)	307, 361, 399, 426, 430, 590, 987, 1050, 1114
SfaNI	GCATC	3 cut(s)	394, 787, 1040
SfcI	CTRYAG	1 cut(s)	986
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	676
SmlI	CTYRAG	1 cut(s)	1035
SmoI	CTYRAG	1 cut(s)	1035
Sse9I	AATT	5 cut(s)	88, 383, 435, 1078, 1152
SsiI	CCGC	1 cut(s)	742
SspMI	CTAG	6 cut(s)	36, 398, 425, 696, 890, 1028
StyI	CCWWGG	2 cut(s)	276, 424
TaaI	ACNGT	3 cut(s)	163, 364, 1186
TaqI	TCGA	2 cut(s)	452, 653
TasI	AATT	5 cut(s)	88, 383, 435, 1078, 1152
TatI	WGTACW	3 cut(s)	155, 201, 364
TfiI	GAWTC	7 cut(s)	109, 194, 326, 640, 658, 1070, 1172
Tru1I	TTAA	4 cut(s)	674, 717, 921, 1058
Tru9I	TTAA	4 cut(s)	674, 717, 921, 1058
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	6 cut(s)	282, 336, 369, 376, 404, 597
TspGWI	ACGGA	1 cut(s)	890
Van91I	CCANNNNNTGG	1 cut(s)	1123
VneI	GTGCAC	1 cut(s)	705
VpaK11BI	GGWCC	1 cut(s)	692
XmaJI	CCTAGG	1 cut(s)	424
XspI	CTAG	6 cut(s)	36, 398, 425, 696, 890, 1028
ZrmI	AGTACT	1 cut(s)	157
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.